prot_P-wetherbeei_contig148.6.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig148.6.1
Unique Nameprot_P-wetherbeei_contig148.6.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length214
Homology
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: D8LT94_ECTSI (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT94_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 6.920e-59
Identity = 102/213 (47.89%), Postives = 145/213 (68.08%), Query Frame = 0
Query:    1 MMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAA---AQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWLAMSYSED 210
            MM+YQ IE++GNKG+WT D+K  T++ Q  MTK LK LE R LVK+ KSV ++SKKLYML +L PAK+ITGGPWYTD EFD++FV  L ++++ YV++ +   L  IA  ++ SGI+   L ++EV  +++ L++D  LEEVR  GA +     A  G  YK+A A+    NA+T +PCG C+V   C E G +SP+TC+Y  EWL +  S++
Sbjct:   89 MMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVR--GAASRFNRDAGDGPVYKMAPAVEVV-NAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSDE 298          
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A1V9ZF30_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZF30_9STRA)

HSP 1 Score: 183 bits (465), Expect = 5.410e-54
Identity = 94/211 (44.55%), Postives = 138/211 (65.40%), Query Frame = 0
Query:    3 VYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWLAMSYSEDDIF 213
            V   IE++GNKGVWT D+K  T+LA+  + K ++ LE R LVK+VKS++ ++KKLYML DLVP++DITGGPWY + EFDHDF+D L N + +++R     TL QI  ++  SGI    L  +E+  ++N LI+D R+EEVR    +A      V YK+   + S  +A +  PCG+C V +QC +G  +SP TC+Y  +W+ ++   DD+F
Sbjct:   89 VLHEIEKAGNKGVWTRDIKSQTNLAEVTIRKIIRVLETRHLVKAVKSISQKNKKLYMLYDLVPSRDITGGPWYNEQEFDHDFIDTLSNFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPEEMMSIVNTLIYDERIEEVR-TARLANGEMREVSYKICRDV-SVFDALSEAPCGICPVFDQCADGNIVSPATCVYLTKWMNVA---DDLF 294          
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A2P6TYN8_CHLSO (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TYN8_CHLSO)

HSP 1 Score: 181 bits (459), Expect = 3.750e-53
Identity = 90/203 (44.33%), Postives = 134/203 (66.01%), Query Frame = 0
Query:    1 MMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWL 203
            M+VYQ I+ +GN G+WT D+K+ T+L Q ++ K LK LE+R LVKSVKSV   S+K+YML +L PAK++TGGPWY +N FD +F+ VL    + Y++    ATL  I   ++ +GI+ + LQ D+V ++IN L +D ++E +  +          + Y++      A  A+TS+PCG+C V  +CVEGG ISPQTC+Y++ WL
Sbjct:   85 MLVYQCIQAAGNMGIWTRDMKQRTNLPQPKINKILKQLEERLLVKSVKSVQNASRKVYMLYELEPAKELTGGPWYGENAFDSEFISVLQEATMSYIKSRSDATLSDIVRFIKETGISKQALQEDDVQRIINTLDYDGKIEGMEVEDDDG---DMVIHYRLPLMRVPASTAFTSIPCGVCPVFTECVEGGKISPQTCVYYQSWL 284          
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A067BY85_SAPPC (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BY85_SAPPC)

HSP 1 Score: 181 bits (458), Expect = 4.610e-53
Identity = 93/211 (44.08%), Postives = 134/211 (63.51%), Query Frame = 0
Query:    3 VYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWLAMSYSEDDIF 213
            V   IE+SGNKGVWT D+K  T+L +  + K ++ LE R LVK+VKS++ ++KKLYML DLVP++DITGGPWY + EFDHDF+D L   + +++R     TL QI  ++  SGI    L  DE+  ++N LI+D R+EEVR    +A      V YK+   + S  +  +  PCG+C V  QC +G  +SP TC+Y  +W+ ++   DD+F
Sbjct:   79 VLHEIEKSGNKGVWTRDIKMQTNLPEMTIRKIIRTLESRHLVKAVKSISQKNKKLYMLYDLVPSRDITGGPWYNEQEFDHDFIDTLSTFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPDEMMSIVNTLIYDERIEEVR-TARLANGEMRDVSYKICRDV-SVFDGLSEAPCGVCPVFEQCADGNIVSPATCVYLTKWMNVA---DDLF 284          
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A7I4CBS8_PHYPA (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4CBS8_PHYPA)

HSP 1 Score: 177 bits (449), Expect = 2.760e-52
Identity = 88/204 (43.14%), Postives = 139/204 (68.14%), Query Frame = 0
Query:    1 MMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWLA 204
            M+VYQ+IE + N+G+WTADLKR T+L Q Q+ K LK+LE R LVK+VK+V  +++K+YML DL P++++TGG WYT+ ++D +FVDV+    ++++ +   A L  IA  ++ SGIT   L L+E  Q+++ L+ D  +EE    G  ++     + Y+VA A     +A T++PCG+C V ++C  GG +SP+TC+YF +WL+
Sbjct:   37 MLVYQSIEAAANQGIWTADLKRRTNLQQPQINKALKNLEGRSLVKAVKTVTNKNRKVYMLFDLTPSREVTGGAWYTEQDYDAEFVDVVKQQCLQFITRQGLADLEAIADAIKKSGITQVELGLEEFKQIMDTLVLDGDVEETMGGGTYSS---DTLCYRVAKARIPETSALTNVPCGICPVLHECQPGGLVSPETCVYFNDWLS 237          
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A2D4BDY6_PYTIN (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDY6_PYTIN)

HSP 1 Score: 178 bits (452), Expect = 5.140e-52
Identity = 93/202 (46.04%), Postives = 135/202 (66.83%), Query Frame = 0
Query:    2 MVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWL 203
            +V Q IER+GNKGVWT D+K  T++ Q  +TK L+ LE R+LVKSVKS+++++KKLYML DLVP+ +ITGGPWY + EFDH F+D L   + + ++ +  +TL  I  ++  SGI+   L  DE+  +I  L++D R+EEVR    +   A    +YK++  I S  NA +  PCG+C V +QC EG  ISP++C+Y  +WL
Sbjct:   90 LVLQEIERAGNKGVWTRDIKTHTNIPQQIVTKTLRVLESRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLKAITDKVHASGISKVALGPDEIRSIIQTLMYDGRVEEVRAVR-LTPGANHETKYKISQEI-STFNALSETPCGVCPVFDQCQEGNVISPRSCLYLTKWL 289          
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A024U424_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024U424_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.010e-51
Identity = 91/201 (45.27%), Postives = 132/201 (65.67%), Query Frame = 0
Query:    3 VYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWL 203
            V   IE++GNKG+WT D+K  T++ +  + K ++ LE R LVK+VKS++ ++KKLYML DLVP++DITGGPWY + EFDHDF+D L N + +++R     TL QI  ++  SGI    L  DE+  ++N LI+D+R+EEVR    +A+     V YKV+  +    +  +  PCG+C V +QC +G  ISP TCIY  +WL
Sbjct:   79 VLHEIEKAGNKGIWTRDIKAKTNIPEVIIRKTIRLLETRHLVKAVKSISQKNKKLYMLFDLVPSRDITGGPWYNEQEFDHDFIDTLRNFVCQFIRAKGIVTLKQITDKVHESGIAKVSLGPDEMMSILNTLIYDDRVEEVR-AARLASGEWREVSYKVSREVTDF-DTLSDTPCGVCPVFDQCADGNIISPATCIYLTKWL 277          
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A485KM43_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KM43_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.690e-51
Identity = 91/201 (45.27%), Postives = 132/201 (65.67%), Query Frame = 0
Query:    3 VYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWL 203
            V   IE+SGN G+WT D+K  T++ +  + K ++ LE RQLVK+VKS++ ++KKLYM+ DLVP++DITGGPWY + EFDHDF+D L N + ++++     TL QI  ++  SGI    L  DE+  ++N LI+D R+EEVR    +A+     V YKV+  + S  +  +  PCG+C V +QC +G  ISP TCIY  +WL
Sbjct:   85 VLHEIEKSGNTGIWTRDIKTKTNIPEVIIRKTIRLLETRQLVKAVKSISQKNKKLYMMFDLVPSRDITGGPWYNEQEFDHDFIDTLRNFVCQFIKAKGIVTLQQITDKVHESGIAKVSLGPDEMMSILNTLIYDERVEEVR-AARLASGEWRDVSYKVSKEV-SDFDTLSETPCGVCPVFDQCADGNVISPATCIYLTKWL 283          
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A0W8DBA8_PHYNI (DNA-directed RNA polymerase III subunit RPC6 n=24 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DBA8_PHYNI)

HSP 1 Score: 176 bits (445), Expect = 5.040e-51
Identity = 91/204 (44.61%), Postives = 136/204 (66.67%), Query Frame = 0
Query:    2 MVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWLAM 205
            +V Q IER+GNKG+WT D+K  T++ Q  +TK L+ LE R+LVKSVKS+++++KKLYML DLVP+ +ITGGPWY + EFDH F+D L   + + ++ +  +TL  I  ++  SGI+   L  +E+  +I  L++D R+EEVR       +A   V+YKV+  I +  N  +  PCG+C V +QC EG  ISP++C+Y  +WL +
Sbjct:   91 LVLQEIERAGNKGIWTRDIKSHTNIPQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVR-------SASHEVKYKVSQQITTF-NYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWLGL 286          
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Match: A0A7R9U7U3_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7U3_9STRA)

HSP 1 Score: 176 bits (446), Expect = 5.090e-51
Identity = 89/204 (43.63%), Postives = 129/204 (63.24%), Query Frame = 0
Query:    2 MVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSVNARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAKQATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAAAAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFKEWLAM 205
            ++YQ I+++GNKG+WT  +   T++ Q  +TK LK LE+RQL+KSVKSV +R KKLYML + VPA +ITGG WY++ EFDH+FV  +   +  Y+++ + A+L  IA  ++ +G +   L  D+V Q++ +LIFD R+E V+           G  Y+    I + P   T  PCG+C V NQC EGG ISP TC+Y   WL +
Sbjct:   97 LIYQEIKKAGNKGIWTRKITTETNVQQQVLTKTLKLLEQRQLIKSVKSVTSRRKKLYMLFEEVPATEITGGAWYSEGEFDHEFVSSMSQFVYTYIKQGESASLQDIAKAVRETGFSKVDLSTDDVQQIVESLIFDGRVERVQNPILTQMGLDNGPLYRSKPKI-TTPQFVTENPCGICPVANQCCEGGVISPATCVYMNHWLEL 299          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig148.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT94_ECTSI6.920e-5947.89DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A1V9ZF30_9STRA5.410e-5444.55DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A2P6TYN8_CHLSO3.750e-5344.33DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A067BY85_SAPPC4.610e-5344.08DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A7I4CBS8_PHYPA2.760e-5243.14DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A2D4BDY6_PYTIN5.140e-5246.04DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A024U424_9STRA1.010e-5145.27DNA-directed RNA polymerase III subunit RPC6 n=8 T... [more]
A0A485KM43_9STRA1.690e-5145.27DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A0W8DBA8_PHYNI5.040e-5144.61DNA-directed RNA polymerase III subunit RPC6 n=24 ... [more]
A0A7R9U7U3_9STRA5.090e-5143.63DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..62
e-value: 1.3E-24
score: 87.9
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 2..102
e-value: 2.9E-39
score: 135.4
IPR007832RNA polymerase Rpc34PIRSFPIRSF028763RNAP3_C34/C39coord: 1..206
e-value: 1.8E-58
score: 195.7
IPR016049RNA polymerase Rpc34-likePANTHERPTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDcoord: 1..203
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig148contigP-wetherbeei_contig148:8586..10726 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig148.6.1mRNA_P-wetherbeei_contig148.6.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig148 8403..11450 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig148.6.1 ID=prot_P-wetherbeei_contig148.6.1|Name=mRNA_P-wetherbeei_contig148.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=214bp
MMVYQAIERSGNKGVWTADLKRLTSLAQTQMTKCLKDLEKRQLVKSVKSV
NARSKKLYMLIDLVPAKDITGGPWYTDNEFDHDFVDVLFNHIVKYVRKAK
QATLLQIATELQGSGITDEVLQLDEVAQLINALIFDNRLEEVRYKGAVAA
AAQTGVQYKVAAAIHSAPNAWTSMPCGLCRVRNQCVEGGNISPQTCIYFK
EWLAMSYSEDDIF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR007832RNA_pol_Rpc34
IPR016049RNA_pol_Rpc34-like
IPR036390WH_DNA-bd_sf