prot_P-wetherbeei_contig14733.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig14733.1.1
Unique Nameprot_P-wetherbeei_contig14733.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length170
Homology
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 3.250e-43
Identity = 86/128 (67.19%), Postives = 100/128 (78.12%), Query Frame = 0
Query:   38 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLS-SGPKSGTFKRELVGMFTPATFIEGTVEALIPSA 152
            K TPMEQQVVDLK KHP VLLLVECGYR+RFFG DA  AA+VLR+YAHMDHNF VAS+PT RL V            GVVRQ E+AA+KAAGL+ +G KSGTFKREL  +F+ AT++EG VEAL+PS+
Sbjct:  360 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVEGAVEALMPSS 487          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A4D9D7L2_9STRA (MutS_I domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7L2_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.220e-35
Identity = 75/121 (61.98%), Postives = 88/121 (72.73%), Query Frame = 0
Query:   35 GAKKYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLS-SGPKSGTFKRELVGMFTPATFIE 142
            G+ + TP+EQQVV LKR HPD LLLVECGYR RFFG+DA  A+QVL +Y ++DH F VASIPT R+ V            GVVRQ ETAA+KAAGLS SG KSGTF+REL G+FT  T+ E
Sbjct:  161 GSTRLTPLEQQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTRCTYNE 281          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: W7TSS8_9STRA (Dna mismatch repair protein msh3 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSS8_9STRA)

HSP 1 Score: 135 bits (339), Expect = 7.970e-35
Identity = 75/121 (61.98%), Postives = 88/121 (72.73%), Query Frame = 0
Query:   35 GAKKYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLS-SGPKSGTFKRELVGMFTPATFIE 142
            G+ + TP+EQQVV LKR HPD LLLVECGYR RFFG+DA  A+QVL +Y ++DH F VASIPT R+ V            GVVRQ ETAA+KAAGLS SG KSGTF+REL G+FT  T+ E
Sbjct:  269 GSTRLTPLEQQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTRCTYNE 389          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: Q9M512_BRANA (DNA mismatch repair protein (Fragment) n=1 Tax=Brassica napus TaxID=3708 RepID=Q9M512_BRANA)

HSP 1 Score: 130 bits (328), Expect = 1.610e-34
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 0
Query:   38 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPAT 139
            KYTP+EQQVV+LKRKHPDV+L+VE GYR+RFFG+DAEIAA+VL +YAHMDH+FM AS+PT RL V            GVV+Q ETAA+K+ G +   ++G F R L G++T AT
Sbjct:   65 KYTPLEQQVVELKRKHPDVILMVEVGYRYRFFGEDAEIAARVLGIYAHMDHSFMTASVPTFRLNVHVRGLVNAGYKVGVVKQTETAAIKSHGAN---RAGPFFRGLSGLYTKAT 175          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A6J8AAJ0_MYTCO (DNA mismatch repair protein n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8AAJ0_MYTCO)

HSP 1 Score: 136 bits (342), Expect = 6.000e-34
Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 0
Query:   38 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFI 141
            KYTP+EQQ VD+K K+PD LLLVECGY++RFFG+DAE+AA+VL+++ H+DHNFM ASIPTHRL V            GVV+QMETAA+KAAG +   KS  F R+L  ++T +T I
Sbjct:  204 KYTPLEQQYVDIKNKYPDALLLVECGYKYRFFGEDAEVAAKVLKIFCHLDHNFMTASIPTHRLFVHVRRLVSAGYKVGVVKQMETAALKAAGDN---KSAPFTRQLQSLYTKSTLI 316          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A6P8YVN5_THRPL (DNA mismatch repair protein Msh3-like n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8YVN5_THRPL)

HSP 1 Score: 134 bits (337), Expect = 2.800e-33
Identity = 72/129 (55.81%), Postives = 90/129 (69.77%), Query Frame = 0
Query:   32 AAAGAKKYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLI------------VGVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFIEGTVEAL 148
            A  G  K+TP+EQQVVDLK++HP VLL VECGY++RFFG+DAEIAAQ L +YAH+DHNFM ASIP HRL             VG+V+Q+ETAA+KA    S  KS  F R+L  +FT AT I   V+++
Sbjct:  163 AKFGKVKFTPLEQQVVDLKKEHPGVLLFVECGYKYRFFGEDAEIAAQELNIYAHLDHNFMTASIPVHRLHAHVGRLVEKGHKVGIVKQVETAALKAM---SDNKSAPFTRKLQHLFTRATLIGEDVDSI 288          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: UPI001458765E (LOW QUALITY PROTEIN: DNA mismatch repair protein Msh3-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458765E)

HSP 1 Score: 132 bits (333), Expect = 9.780e-33
Identity = 71/128 (55.47%), Postives = 90/128 (70.31%), Query Frame = 0
Query:   34 AGAK-KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFIEGTVEAL 148
            AG K KYTP+EQQ VD+K K+P  +L VECGY++RFFG+DAEIAA+VL+++ H+DHNFM ASIPTHRL V            GVV+QMETAA+KAAG +   +S  F REL  ++T +T I   V  L
Sbjct:  247 AGKKIKYTPLEQQFVDIKEKYPHAVLCVECGYKYRFFGEDAEIAAEVLKIFCHLDHNFMTASIPTHRLFVHVRRLVAAGYKVGVVKQMETAALKAAGDN---RSAPFTRELSALYTKSTLIGEDVNPL 371          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A2P5CUR2_PARAD (DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5CUR2_PARAD)

HSP 1 Score: 129 bits (323), Expect = 1.360e-32
Identity = 68/114 (59.65%), Postives = 84/114 (73.68%), Query Frame = 0
Query:   38 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPAT 139
            KYTP+EQQVVDLK+KHPDVLL+VE GY++RFFG+DAE AA+VL +YAHMDHNF+ AS+PT RL V            GVV+Q ETAA+KA GL+   + G F R L  ++T AT
Sbjct:  125 KYTPLEQQVVDLKKKHPDVLLMVEVGYKYRFFGEDAETAARVLGIYAHMDHNFLTASVPTFRLSVHVRRLVSAGFKVGVVKQTETAAMKAHGLN---RLGPFCRGLSALYTKAT 235          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: UPI00148A8C1D (DNA mismatch repair protein Msh3 isoform X1 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A8C1D)

HSP 1 Score: 131 bits (329), Expect = 1.860e-32
Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 0
Query:   38 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFIEGTVE 146
            KYTP+EQQ ++LK K+PD LL VECGY++RFFG+DAE AA VL++Y H DHNFM ASIP HRL V            GVV+QMETAA+KA G +   KSG F R+L  M+T +T     V+
Sbjct:  212 KYTPLEQQYIELKEKYPDTLLFVECGYKYRFFGEDAENAAHVLKIYCHQDHNFMTASIPVHRLFVHVRRLVAAGYKVGVVKQMETAALKACGDN---KSGPFTRQLTAMYTKSTLFGQDVD 329          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A7K4IY56_GEOCA (MSH3 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7K4IY56_GEOCA)

HSP 1 Score: 122 bits (305), Expect = 2.170e-32
Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 0
Query:   39 YTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFI 141
            YTP+E Q +++K+++ D +L VECGY++RFFG+DAEIAA+ L +Y H DHNFM ASIPTHRL V            GVV+QMETAA+KAAG +   KS  F R+L  ++T +T I
Sbjct:   24 YTPLELQFIEMKKQYKDAVLCVECGYKYRFFGEDAEIAAKELNIYCHQDHNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQMETAALKAAGEN---KSSLFSRKLTALYTKSTLI 135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYL3_ECTSI3.250e-4367.19MutS protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A4D9D7L2_9STRA1.220e-3561.98MutS_I domain-containing protein n=1 Tax=Nannochlo... [more]
W7TSS8_9STRA7.970e-3561.98Dna mismatch repair protein msh3 (Fragment) n=1 Ta... [more]
Q9M512_BRANA1.610e-3459.65DNA mismatch repair protein (Fragment) n=1 Tax=Bra... [more]
A0A6J8AAJ0_MYTCO6.000e-3458.62DNA mismatch repair protein n=2 Tax=Mytilus corusc... [more]
A0A6P8YVN5_THRPL2.800e-3355.81DNA mismatch repair protein Msh3-like n=1 Tax=Thri... [more]
UPI001458765E9.780e-3355.47LOW QUALITY PROTEIN: DNA mismatch repair protein M... [more]
A0A2P5CUR2_PARAD1.360e-3259.65DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481... [more]
UPI00148A8C1D1.860e-3255.37DNA mismatch repair protein Msh3 isoform X1 n=1 Ta... [more]
A0A7K4IY56_GEOCA2.170e-3253.04MSH3 protein (Fragment) n=3 Tax=Neognathae TaxID=8... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007695DNA mismatch repair protein MutS-like, N-terminalPFAMPF01624MutS_Icoord: 40..142
e-value: 2.1E-17
score: 63.4
IPR016151DNA mismatch repair protein MutS, N-terminalGENE3D3.40.1170.10DNA repair protein MutS, domain Icoord: 29..152
e-value: 7.6E-25
score: 89.2
IPR016151DNA mismatch repair protein MutS, N-terminalSUPERFAMILY55271DNA repair protein MutS, domain Icoord: 35..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availablePANTHERPTHR11361:SF122DNA MISMATCH REPAIR PROTEIN MSH3coord: 28..142
IPR045076DNA mismatch repair MutS familyPANTHERPTHR11361DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBERcoord: 28..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14733contigP-wetherbeei_contig14733:6..1229 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14733.1.1mRNA_P-wetherbeei_contig14733.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig14733 6..1229 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig14733.1.1 ID=prot_P-wetherbeei_contig14733.1.1|Name=mRNA_P-wetherbeei_contig14733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
TGDGNGGCGGGSGGGSGDGGRSGGKGKGRAAAAAGAKKYTPMEQQVVDLK
RKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRL
IVGVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFIEGTVEALIP
SAAPGATSGGGEGGGGRGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007695DNA_mismatch_repair_MutS-lik_N
IPR016151DNA_mismatch_repair_MutS_N
IPR045076MutS_family