prot_P-wetherbeei_contig147.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig147.2.1
Unique Nameprot_P-wetherbeei_contig147.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length266
Homology
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: D8LK53_ECTSI (HTH La-type RNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK53_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 4.380e-38
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 0
Query:   12 ENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGG-MGVPRYIKV 116
            E +AY   LAV+QI FYF+VENLC+DIF+R ++D+ G+IPIAFVANFPGVAR G E  DI  G+  S T++VD ENETMR+R GWE WLLPN   G  GVPRYIKV
Sbjct:  124 EQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKV 229          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A836CAE4_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE4_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.830e-37
Identity = 63/115 (54.78%), Postives = 84/115 (73.04%), Query Frame = 0
Query:   11 AENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAAA 125
            AE +  AA+ AV+Q+ +YFSV NLC D+F+R ++D  G+IP+AFVANFPG A  GAE+ DI+  L  S+ +E DE NETMRLR GW+ W+LPN  GG+GVPRYIK++  +    A
Sbjct:    4 AEAKKMAAEYAVKQMEWYFSVHNLCSDVFMRSYMDTEGYIPVAFVANFPGCASLGAEFTDILEALKSSEMLEFDEANETMRLREGWDMWILPNASGGLGVPRYIKLSEDEAAKIA 118          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: D0NQG1_PHYIT (HTH La-type RNA-binding domain-containing protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NQG1_PHYIT)

HSP 1 Score: 124 bits (311), Expect = 5.730e-31
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 0
Query:    4 VNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLA 123
            VN +Y    +    AQ A  QI FYF+ +NL +DIFLRQH+D  GF+P+AFV +F  V     +Y  ++  + QS+T+E+DE+NE +RLR GW+ W+ PN  GG GVPRYIK+   + LA
Sbjct:  110 VNGVYVPTPDLKVTAQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKQSETVELDEQNEKIRLRQGWQMWVWPNAEGGYGVPRYIKLAEDEALA 229          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: K8ZBX0_NANGC (Rna-binding la domain protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZBX0_NANGC)

HSP 1 Score: 125 bits (314), Expect = 5.960e-31
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 0
Query:   12 ENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQ-SQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDT 121
            E R Y A +AVQQI +YFSV+NLC+D +LR HLD+ G++P+A + NFP VA   A+Y++IV+ L + S  +E DE NET+RL+     WLLPN  GGMG PR++K  APDT
Sbjct:   54 EAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPNGRGGMGCPRWLK-QAPDT 163          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: G4ZF40_PHYSP (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZF40_PHYSP)

HSP 1 Score: 124 bits (310), Expect = 7.460e-31
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 0
Query:    5 NTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPD 120
            N +Y    +    AQ A  QI FYF+ +NL +DIFLRQH+D  GF+P+AFV +F  V     +YA ++  + QS+T+E+DE+NE +RLR GW+ W+ PN  GG GVPRYIKV   D
Sbjct:  112 NGVYVPTPDVKVTAQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYASLLEAVKQSETLELDEQNEKIRLREGWQKWVWPNAEGGYGVPRYIKVADKD 227          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A484DZL2_BRELC (HTH La-type RNA-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZL2_BRELC)

HSP 1 Score: 124 bits (310), Expect = 7.850e-31
Identity = 57/121 (47.11%), Postives = 78/121 (64.46%), Query Frame = 0
Query:    4 VNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAA 124
            VN +Y    +    AQ A  QI FYF+ +NL +DIFLRQH+D  G++P+AFV +F  V     +Y  ++  +  S+T+E+DE NE +RLR GWE W+ PN  GG GVPRYIKVT  + + A
Sbjct:  109 VNGVYVPNVDTRVTAQWAKNQIEFYFTSDNLVRDIFLRQHMDVEGYVPLAFVGSFQAVYAVHQDYESLIEAMKHSETLELDEANEKVRLRNGWEKWVWPNIEGGYGVPRYIKVTEGENIVA 229          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A5D6YKR8_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YKR8_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.010e-29
Identity = 58/122 (47.54%), Postives = 77/122 (63.11%), Query Frame = 0
Query:    4 VNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAAA 125
            VN +Y    +    AQ A  QI FYFS +NL +DIFLRQH+D  GF+P+AFV +F  V  A  +Y  ++  +  S+++E+D ENE +RLR GW+ WL PN  GG GVPRYIK       AA+
Sbjct:  105 VNGVYVPNTDPKLTAQWAKSQIEFYFSPDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVFAAHQDYPSLLEAMKDSESVELDAENEKVRLRDGWQKWLWPNADGGYGVPRYIKAAGESASAAS 226          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: H3GP14_PHYRM (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP14_PHYRM)

HSP 1 Score: 120 bits (301), Expect = 1.400e-29
Identity = 57/121 (47.11%), Postives = 77/121 (63.64%), Query Frame = 0
Query:    5 NTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAAA 125
            N +Y    +    AQ A  QI FYF+ +NL +DIFLRQH+D  GF+P+AFV +F  V     +Y  ++  +  S TME+DE+NE +RLR GW+ W+ PN  GG GVPRYIK+   +T A A
Sbjct:  106 NGVYVPTPDVHVTAQWAKNQIEFYFTNDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEAMKNSDTMELDEQNEKIRLRQGWQTWVWPNADGGYGVPRYIKLAENETPAEA 226          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: A0A7S1UC17_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC17_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.450e-29
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 0
Query:   12 ENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKV 116
            ENR   A  AV+ I   FS  +LC D +LRQ++D  G+IP+AFVAN+P VA+ GA Y D++ G++ S+ +E+D ENETMRLR  W+ WL P+  GGMG PRY+KV
Sbjct:   76 ENRHLFAASAVRAIEMTFSPNHLCTDEWLRQNMDVEGYIPVAFVANYPHVAQYGALYEDLLSGIASSEILELDAENETMRLRENWQQWLFPDGKGGMGCPRYVKV 180          
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Match: V9E4H7_PHYPR (HTH La-type RNA-binding domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9E4H7_PHYPR)

HSP 1 Score: 120 bits (300), Expect = 2.470e-29
Identity = 58/123 (47.15%), Postives = 79/123 (64.23%), Query Frame = 0
Query:    4 VNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFIPIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWLLPNHYGGMGVPRYIKVTAPDTLAAAD 126
            VN +Y    +    AQ A  QI FYF+ +NL +DIFLRQH+D  G++P+AFV +F  V     +Y  ++  +  S+T+E+DE+NE +RLR GWE W+ PN  GG GVPRYIK+   D  A AD
Sbjct:  111 VNGVYVPTPDVKVTAQWAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETVELDEQNEKIRLRDGWEKWVWPNAVGGYGVPRYIKLA--DGEAPAD 231          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig147.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK53_ECTSI4.380e-3865.09HTH La-type RNA-binding domain-containing protein ... [more]
A0A836CAE4_9STRA1.830e-3754.78HTH La-type RNA-binding domain-containing protein ... [more]
D0NQG1_PHYIT5.730e-3147.50HTH La-type RNA-binding domain-containing protein ... [more]
K8ZBX0_NANGC5.960e-3154.05Rna-binding la domain protein (Fragment) n=2 Tax=N... [more]
G4ZF40_PHYSP7.460e-3149.14HTH La-type RNA-binding domain-containing protein ... [more]
A0A484DZL2_BRELC7.850e-3147.11HTH La-type RNA-binding domain-containing protein ... [more]
A0A5D6YKR8_9STRA1.010e-2947.54HTH La-type RNA-binding domain-containing protein ... [more]
H3GP14_PHYRM1.400e-2947.11HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S1UC17_9STRA1.450e-2953.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
V9E4H7_PHYPR2.470e-2947.15HTH La-type RNA-binding domain-containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006630La-type HTH domainSMARTSM00715lacoord: 15..93
e-value: 9.4E-11
score: 51.7
IPR006630La-type HTH domainPFAMPF05383Lacoord: 22..75
e-value: 5.2E-14
score: 52.0
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 11..102
score: 17.030628
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 6..95
e-value: 8.6E-19
score: 69.1
IPR045180La domain containing proteinPANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 22..101
NoneNo IPR availablePANTHERPTHR22792:SF76LA-RELATED PROTEIN 1coord: 22..101
NoneNo IPR availableCDDcd07323LAMcoord: 23..91
e-value: 3.13841E-20
score: 80.2685
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 11..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig147contigP-wetherbeei_contig147:1570..2617 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig147.2.1mRNA_P-wetherbeei_contig147.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig147 1138..2773 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig147.2.1 ID=prot_P-wetherbeei_contig147.2.1|Name=mRNA_P-wetherbeei_contig147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=266bp
MNGVNTMYQSAENRAYAAQLAVQQITFYFSVENLCKDIFLRQHLDQAGFI
PIAFVANFPGVARAGAEYADIVRGLSQSQTMEVDEENETMRLRFGWEGWL
LPNHYGGMGVPRYIKVTAPDTLAAADAADTAAPAVAANSAAPGEVKAAEE
AAVEAAVEAAVAAEAGKMVEAAVAEADARKAPETGGAAPVAEPPVLASGA
NEPTVLPEEPAAAEEAEHVCIDKTGAASDDAEPAVVAAAAADEAVAAPIE
AAASASAEEKQEERP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006630La_HTH
IPR036388WH-like_DNA-bd_sf
IPR045180La_dom_prot
IPR036390WH_DNA-bd_sf