prot_P-wetherbeei_contig1458.1.2 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1458.1.2
Unique Nameprot_P-wetherbeei_contig1458.1.2
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length205
Homology
BLAST of mRNA_P-wetherbeei_contig1458.1.2 vs. uniprot
Match: A0A7R9U6Q5_9STRA (B-related factor 1 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6Q5_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.750e-36
Identity = 82/196 (41.84%), Postives = 110/196 (56.12%), Query Frame = 0
Query:   10 CGGCELYDGWPDETAGNVVCNSCGRVLEQDAIVSTVEFSETNGQSAVVGQFVSSTCTRPYGTGRGGHSRYGYAMSRAPREQTLKTGSQLINSAAMRLQLKAPTTERAIRCFKLAVEHKFCQGRKSQLVAAACAYIACREANLPVMLLDISDVVGENVFHLGDCYRKLVDPSVPTLTLADPVLFVDRFASMLQLGDK 205
            C  C   +   ++  G+ VC  CG V+E++AIVS++EF ET G   V GQF+S+T  +PY +   G  RY Y  SR  R+ TL  G + I   A  L+L A  TE A R F +AV+  F QGRK+  V AAC YI CR+   P +L+D SD +  NVF LG  + K        L + DP L++ RFA+ L  G K
Sbjct:   16 CPECASLEIEVNDAGGDAVCVRCGTVVEENAIVSSIEFEETGG---VRGQFMSATAQKPYSSSVRGRGRYSY--SRDSRDTTLANGRRQIGQVASALRLNAHFTENAHRLFTIAVQRSFVQGRKTMRVVAACLYIVCRQERAPYLLIDFSDALQINVFKLGATFMKFKKLLNLKLPIVDPGLYIHRFAAKLNFGKK 206          
BLAST of mRNA_P-wetherbeei_contig1458.1.2 vs. uniprot
Match: A0A6H5L6K7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K7_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 6.740e-35
Identity = 84/215 (39.07%), Postives = 118/215 (54.88%), Query Frame = 0
Query:    1 MAAPLKGAW----CGGCELYDGWPDETAGNVVCNSCGRVLEQDAIVSTVEFSETNGQSAVVGQFVSSTCTRPYGTGRG-GHSRYGYAMSRAPREQTLKTGSQLINSAAMRLQLKAPTTERAIRCFKLAVEHKFCQGRKSQLVAAACAYIACREANLPVMLLDISDVVGENVFHLGDCYRKLV-----DPSVPTLTLADPVLFVDRFASMLQLGDK 205
            M AP  G      CGG    D      +G+  C  CG V++++ IVS+V+FSE+ G S VVGQFVS    RP G G   G  R+G   SR  R+ T++ G + I     +L L+    + A R F L V   + QGRK+  + AAC YI CR+ + P+ML+DISD +  NV+ LG  ++KL+        VP   + DP +++ RFA+ L LG K
Sbjct:   15 MTAPQDGGTRCPSCGGTNFMD---QPGSGDRACAECGTVVQENNIVSSVQFSESGGSSNVVGQFVSGDRGRPSGGGAARGRGRFG--QSRDSRDATIQNGKKKIIQVLAQLHLRTTLADEAARLFALCVTQNYVQGRKTMNIVAACVYIVCRQNHFPIMLIDISDKLAVNVYVLGKTFQKLIKHLNLQTQVP---IVDPAMYIKRFAAKLDLGSK 221          
BLAST of mRNA_P-wetherbeei_contig1458.1.2 vs. uniprot
Match: A0A7S0LNL5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LNL5_9EUKA)

HSP 1 Score: 130 bits (328), Expect = 1.770e-34
Identity = 79/179 (44.13%), Postives = 100/179 (55.87%), Query Frame = 0
Query:   28 VCNSCGRVLEQDAIVSTVEFSE-TNGQSAVVGQFVSSTCTRPYGTGRGGHSRYGYAMSRAPREQTLKTGSQLINSAAMRLQLKAPTTERAIRCFKLAVEHKFCQGRKSQLVAAACAYIACREANLPVMLLDISDVVGENVFHLGDCYRKLVDPSVPTLTLADPVLFVDRFASMLQLGDK 205
            VC  CG VLE++AIV+ V F++ + G S+VVGQFVSST          G    G   SR  RE     G + I+  A  L+L     E A R F LAV+H F QGRK+Q V AAC Y  CR      +L+D SDV+  NV+ LG C+ K       TL + DP L++ RFAS L+ GDK
Sbjct:    2 VCIQCGNVLEENAIVNEVTFAQDSGGGSSVVGQFVSSTP---------GVRSAGLGFSREGREVAFSNGQRHISQLAAALRLAEHHQEAAQRLFMLAVQHNFIQGRKTQHVIAACLYTVCRREKTAHLLIDYSDVLQTNVYMLGSCFLKFTRMLSLTLPIIDPSLYIHRFASKLEFGDK 171          
BLAST of mRNA_P-wetherbeei_contig1458.1.2 vs. uniprot
Match: W7TP75_9STRA (Transcription factor iiib 90 kDa subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TP75_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.160e-34
Identity = 79/198 (39.90%), Postives = 112/198 (56.57%), Query Frame = 0
Query:   10 CGGCELYDGWPDETAGNVVCNSCGRVLEQDAIVSTVEFSETN--GQSAVVGQFVSSTCTRPYGTGRGGHSRYGYAMSRAPREQTLKTGSQLINSAAMRLQLKAPTTERAIRCFKLAVEHKFCQGRKSQLVAAACAYIACREANLPVMLLDISDVVGENVFHLGDCYRKLVDPSVPTLTLADPVLFVDRFASMLQLGDK 205
            C G +L    PD   G  +C +C  ++E++AIVS+VEF+E N  G S VVGQFV    T+ Y +   G  R+    +R  R+ TL  G + I     +L+L+    +RA R F+ AVE  F QGRK+  V A C Y+ CRE N P ML+D SD V  NV+ LG  + K    +   L + DP +++ RFA+ L+LG +
Sbjct:   43 CRGTDLEYSEPD---GATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRF---YTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSE 234          
BLAST of mRNA_P-wetherbeei_contig1458.1.2 vs. uniprot
Match: F0YC94_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC94_AURAN)

HSP 1 Score: 138 bits (348), Expect = 3.150e-34
Identity = 86/209 (41.15%), Postives = 122/209 (58.37%), Query Frame = 0
Query:   10 CGGCELYDGWPDETAGNVVCNSCGRVLEQDAIVSTVEFSETNG-QSAVVGQFVSSTCTRPYG---------TGRGGHSRYGYAMSRAPREQTLKTGSQLINSAAMRLQLKAPTTERAIRCFKLAVEHKFCQGRKSQLVAAACAYIACREANLPVMLLDISDVVGENVFHLGDCY---RKLVDPSVPTLTLADPVLFVDRFASMLQLGDK 205
            CG  ++   W  E  G+ VC  CG V E+  IVS++EF+E+ G  S+VVGQFVS++CT+P+G         +  GG  RYG+   R+ RE TL TG + I   A  L+L A   + A R F +A +  F QGRK+  V  AC Y+ CR      ML+D SDV+  NV+ LG  +   R+L++  +P +   DP L++ RFA+ L+LGDK
Sbjct:  397 CGSIDID--W-QEAGGDAVCVRCGTVCEESTIVSSIEFAESGGGASSVVGQFVSASCTKPFGGLGGSGWGGSRGGGRPRYGFL--RSSRETTLATGRRKIAQVASSLRLGAHFVDGAHRLFGMAAQRNFTQGRKTLHVVCACLYVMCRREKSAHMLIDFSDVLQVNVYALGATFLKFRRLLNLELPII---DPSLYIHRFAAKLELGDK 597          
BLAST of mRNA_P-wetherbeei_contig1458.1.2 vs. uniprot
Match: A0A8J6BZU8_DIALT (B-related factor 1 n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6BZU8_DIALT)

HSP 1 Score: 138 bits (347), Expect = 3.970e-34
Identity = 83/186 (44.62%), Postives = 108/186 (58.06%), Query Frame = 0
Query:   21 DETAGNVVCNSCGRVLEQDAIVSTVEFSE-TNGQSAVVGQFVSSTCTRPYGTGRGGHSRYGYAMSRAPREQTLKTGSQLINSAAMRLQLKAPTTERAIRCFKLAVEHKFCQGRKSQLVAAACAYIACREANLPVMLLDISDVVGENVFHLGDCYRKLVDPSVPTLTLADPVLFVDRFASMLQLGDK 205
            D   G+ VC +CG V+E++ IVS V+F+E  NG S+VVGQF+SS      GTG         + ++  RE T+  G + I+  A  L L +   E A R F LAV+H F QGR++Q V AAC YI CR    P ML+D SDV+  NVF LG  + K        L L DP L++ RFAS L+LGDK
Sbjct:   15 DAAKGDTVCVNCGTVIEENTIVSEVQFAEDANGASSVVGQFISSN-----GTGMSS------SFAKESREITISNGRRKISHIAGALSLNSHHVEAAQRFFLLAVQHNFIQGRRTQHVVAACLYIVCRREKTPHMLIDFSDVLQTNVFALGSTFLKFTRLLNLQLPLIDPSLYIHRFASRLELGDK 189          
BLAST of mRNA_P-wetherbeei_contig1458.1.2 vs. uniprot
Match: A0A448Z1B8_9STRA (B-related factor 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1B8_9STRA)

HSP 1 Score: 137 bits (345), Expect = 4.200e-34
Identity = 81/183 (44.26%), Postives = 107/183 (58.47%), Query Frame = 0
Query:   24 AGNVVCNSCGRVLEQDAIVSTVEFSE-TNGQSAVVGQFVSSTCTRPYGTGRGGHSRYGYAMSRAPREQTLKTGSQLINSAAMRLQLKAPTTERAIRCFKLAVEHKFCQGRKSQLVAAACAYIACREANLPVMLLDISDVVGENVFHLGDCYRKLVDPSVPTLTLADPVLFVDRFASMLQLGDK 205
            AGN VC  CG ++E++AIVS +EF E   G S++VGQFVS+T  + Y  G  G   YG+  SR  RE TL  G + I   A RL+L     + A R F +AVE  F QGR++  V AAC YI+CR+     ML+D SD +  NV+ LG C+ K        L + DP L++ RFA+ L L DK
Sbjct:   20 AGNCVCTECGVIVEENAIVSHMEFVEGAGGSSSMVGQFVSATSRKAYTGGGRGAGNYGF--SRDSRETTLANGRRRIQEVASRLRLGGHYVDAAHRLFTIAVEKNFVQGRRTIHVVAACLYISCRQEKSQHMLIDFSDALQVNVYTLGTCFLKFRRLLGLKLAILDPALYIYRFAAHLDLDDK 200          
BLAST of mRNA_P-wetherbeei_contig1458.1.2 vs. uniprot
Match: A0A1E7FX19_9STRA (B-related factor 1 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX19_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.410e-33
Identity = 86/206 (41.75%), Postives = 112/206 (54.37%), Query Frame = 0
Query:    1 MAAPLKGAWCGGCELYDGWPDETAGNVVCNSCGRVLEQDAIVSTVEFSE-TNGQSAVVGQFVSSTCTRPYGTGRGGHSRYGYAMSRAPREQTLKTGSQLINSAAMRLQLKAPTTERAIRCFKLAVEHKFCQGRKSQLVAAACAYIACREANLPVMLLDISDVVGENVFHLGDCYRKLVDPSVPTLTLADPVLFVDRFASMLQLGDK 205
            MA    G  C  C          +G  VC  CG +LE++AIVS VEF E   G S++VGQFVS+T  + Y TG GG +   Y  SR  RE TL  G + I   A RL+L     + A R F +AVE  F QGR++  V AAC YI+CR+     ML+D SD +  NV+ LG C+ K        L + DP L++ RFA+ L L D+
Sbjct:    1 MADSSGGPVCPNCGSKHIELQGASGASVCTECGVILEENAIVSNVEFVEGQGGASSMVGQFVSATSRKAY-TG-GGRAGGNYGFSRDSRETTLANGRRKIQEVASRLRLGGHYVDSAHRLFTIAVEKNFVQGRRTIHVVAACLYISCRQEKSQHMLIDFSDALQVNVYTLGTCFLKFRRLLGLKLAILDPALYIYRFAAHLDLNDQ 204          
BLAST of mRNA_P-wetherbeei_contig1458.1.2 vs. uniprot
Match: B7GD27_PHATC (B-related factor 1 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GD27_PHATC)

HSP 1 Score: 135 bits (340), Expect = 1.780e-33
Identity = 86/211 (40.76%), Postives = 114/211 (54.03%), Query Frame = 0
Query:    3 APLKGAWCGGCELYDGWPDETAGNVVCNSCGRVLEQDAIVSTVEFSE-TNGQSAVVGQFVSSTCTRPYGTGRGGHS-------RYGYAMSRAPREQTLKTGSQLINSAAMRLQLKAPTTERAIRCFKLAVEHKFCQGRKSQLVAAACAYIACREANLPVMLLDISDVVGENVFHLGDCYRKLVDPSVPTLTLADPVLFVDRFASMLQLGDK 205
            A     +C  C        + +G  VC  CG V+E++AIVS VEF E   G S++VGQFVS+T ++ Y  G GG         RYG+  SR  RE TL  G + I   A RL+L     + A R F +AVE  F QGR++  V AAC YIACR+     ML+D SD +  NV+ LG C+ K        L + DP L++ RFA+ L L +K
Sbjct:   62 ASTMSIFCPNCGSTSIEQHDASGASVCTECGVVVEENAIVSAVEFVEGAGGASSMVGQFVSATSSKAYTGGPGGXXXXXXXXXRYGF--SRDSRETTLANGRRRIQEVASRLRLGTHFVDAAHRLFTIAVERNFVQGRRTTHVVAACLYIACRQEKSQHMLIDFSDALQVNVYTLGTCFLKFRRLLGLKLEIIDPALYIYRFAAHLDLDEK 270          
BLAST of mRNA_P-wetherbeei_contig1458.1.2 vs. uniprot
Match: A0A0M0JU91_9EUKA (Brf1 subunit of RNA polymerase iii transcription initiation factor iiib n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JU91_9EUKA)

HSP 1 Score: 132 bits (332), Expect = 2.350e-33
Identity = 83/197 (42.13%), Postives = 109/197 (55.33%), Query Frame = 0
Query:   10 CGGCELYDGWPDETAGNVVCNSCGRVLEQDAIVSTVEFSE-TNGQSAVVGQFVSSTCTRPYGTGRGGHSRYGYAMSRAPREQTLKTGSQLINSAAMRLQLKAPTTERAIRCFKLAVEHKFCQGRKSQLVAAACAYIACREANLPVMLLDISDVVGENVFHLGDCYRKLVDPSVPTLTLADPVLFVDRFASMLQLGDK 205
            C  C   D   D   G+ VC  CG VLE++AIV+ V F++   G S VVGQ+V++T     G G  G    G+  SR   E     G + I+  A  L+L     E A R F LAV+H F QGR++Q V AAC Y  CR+   P +L+D SDV+ ENV+ LG C+ K       TL + DP L++ RFAS L+ GDK
Sbjct:    6 CPNCGSTDIETDAQRGDAVCIQCGTVLEENAIVNEVTFAQDAGGGSQVVGQYVAATP----GVGSSG---LGFKESR---ELAFNNGQRHISQLAAALRLAEHHQEAAQRLFMLAVQHNFIQGRRTQHVIAACLYTVCRKEKTPHLLIDYSDVLQENVYLLGSCFLKFTRLLSLTLPIIDPSLYIHRFASRLEFGDK 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1458.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9U6Q5_9STRA2.750e-3641.84B-related factor 1 (Fragment) n=1 Tax=Pinguiococcu... [more]
A0A6H5L6K7_9PHAE6.740e-3539.07TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
A0A7S0LNL5_9EUKA1.770e-3444.13Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
W7TP75_9STRA2.160e-3439.90Transcription factor iiib 90 kDa subunit n=2 Tax=M... [more]
F0YC94_AURAN3.150e-3441.15Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J6BZU8_DIALT3.970e-3444.62B-related factor 1 n=2 Tax=Diacronema lutheri TaxI... [more]
A0A448Z1B8_9STRA4.200e-3444.26B-related factor 1 n=1 Tax=Pseudo-nitzschia multis... [more]
A0A1E7FX19_9STRA1.410e-3341.75B-related factor 1 n=1 Tax=Fragilariopsis cylindru... [more]
B7GD27_PHATC1.780e-3340.76B-related factor 1 n=1 Tax=Phaeodactylum tricornut... [more]
A0A0M0JU91_9EUKA2.350e-3342.13Brf1 subunit of RNA polymerase iii transcription i... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000812Transcription factor TFIIBPRINTSPR00685TIFACTORIIBcoord: 139..158
score: 45.33
coord: 22..42
score: 35.24
coord: 192..205
score: 29.12
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 8..204
IPR013763Cyclin-likeSMARTSM00385cyclin_7coord: 97..178
e-value: 3.4E-11
score: 53.2
IPR013763Cyclin-likeCDDcd00043CYCLINcoord: 91..177
e-value: 1.72908E-11
score: 56.0929
IPR013150Transcription factor TFIIB, cyclin-like domainPFAMPF00382TFIIBcoord: 89..177
e-value: 4.9E-18
score: 64.9
NoneNo IPR availableGENE3D1.10.472.170coord: 10..178
e-value: 6.2E-30
score: 106.5
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 8..52
IPR029529Transcription factor IIIB subunit Brf1PANTHERPTHR11618:SF4TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNITcoord: 8..204
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 96..178

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1458contigP-wetherbeei_contig1458:989..2619 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1458.1.2mRNA_P-wetherbeei_contig1458.1.2Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1458 989..2619 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1458.1.2 ID=prot_P-wetherbeei_contig1458.1.2|Name=mRNA_P-wetherbeei_contig1458.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=205bp
MAAPLKGAWCGGCELYDGWPDETAGNVVCNSCGRVLEQDAIVSTVEFSET
NGQSAVVGQFVSSTCTRPYGTGRGGHSRYGYAMSRAPREQTLKTGSQLIN
SAAMRLQLKAPTTERAIRCFKLAVEHKFCQGRKSQLVAAACAYIACREAN
LPVMLLDISDVVGENVFHLGDCYRKLVDPSVPTLTLADPVLFVDRFASML
QLGDK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000812TFIIB
IPR013763Cyclin-like
IPR013150TFIIB_cyclin
IPR029529Brf1
IPR036915Cyclin-like_sf