prot_P-wetherbeei_contig14367.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig14367.1.1
Unique Nameprot_P-wetherbeei_contig14367.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length185
Homology
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BLAST of mRNA_P-wetherbeei_contig14367.1.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.090e-17
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 0 
Query:   67 VALVAHNAAFDMRFLAEEQRRAGCAEGLL-RDAGVTAVVDTLGIFRDTRREFWSQRPGDGR-PTAPPRLRLETIHRHLTGRDLLRAHNAVYDVLGLDTILRAPGL-EHWRAVALRH---QIDIP 184
            V  VAHNA FD +FL EE  R G +  ++ +D GV  +VD+L   ++     W Q+  D   PT P   +L  +  HL G ++  AHNA+ DV+GL+ IL APG+ E WR VA  H   QI +P
Sbjct: 1241 VVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKEN--SLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPNAHNAMGDVVGLERILSAPGINEGWRGVASSHPACQIPVP 1362
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BLAST of mRNA_P-wetherbeei_contig14367.1.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.060e-16
Identity = 52/124 (41.94%), Postives = 72/124 (58.06%), Query Frame = 0 
Query:   67 VALVAHNAAFDMRFLAEEQRRAGCAEGLL-RDAGVTAVVDTLGIFRDTRREFWSQRPGDGR-PTAPPRLRLETIHRHLTGRDLLRAHNAVYDVLGLDTILRAPGL-EHWRAVALRH---QIDIP 184
            V  VAHNA FD +FL EE  R G +  ++ +D GV  +VD+L   +++    W Q+  D   PT P   +L  +  HL G ++  AHNA+ DV+GL+ IL APG+ E WR VA  H   QI +P
Sbjct:  842 VVFVAHNAQFDHKFLKEEVSRCGFSRFMMGQDMGVVCIVDSLRCLKES--SLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVP 963
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14367.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXY9_9PHAE8.090e-1741.94ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
D7FPN7_ECTSI1.060e-1641.94ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 43..176
e-value: 4.1E-15
score: 57.9
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 65..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14367contigP-wetherbeei_contig14367:660..1214 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14367.1.1mRNA_P-wetherbeei_contig14367.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig14367 118..1243 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig14367.1.1 ID=prot_P-wetherbeei_contig14367.1.1|Name=mRNA_P-wetherbeei_contig14367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=185bp
MSMDVQAAMEVENIGFEGALHTQTTFMSQQRVYAPAAPEDFALAAAADPT
AELSPPLGRPLQQRRKVALVAHNAAFDMRFLAEEQRRAGCAEGLLRDAGV
TAVVDTLGIFRDTRREFWSQRPGDGRPTAPPRLRLETIHRHLTGRDLLRA
HNAVYDVLGLDTILRAPGLEHWRAVALRHQIDIP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf