prot_P-wetherbeei_contig14212.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig14212.1.1
Unique Nameprot_P-wetherbeei_contig14212.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length272
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig14212.1.1 vs. uniprot
Match: A0A6H5KNP8_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.510e-10
Identity = 74/264 (28.03%), Postives = 100/264 (37.88%), Query Frame = 0 
Query:   17 SKIYHFFGAAAPSDAA----EDAAKPAXXXXXXXXXXXXSSSKCAKRSSASIPSPREVEGDAKWGALIDRRKQKAWALIQETVG-----VPPDRWLRRSFTATYRSVFQDERSPGVGSNSQWFAG--GTAFGGGRLMRR-----PRDMAAALASASLPDAYPVLVEDQDLEVSEAANDXXXXXXXXEGDAEGEAGYGRRWRRHDLENFALIMDWLSG----------------AGVCGHPQAA------TLLDVALGCRRDDAG 242
            SKI+H+FGA +P +         + PA              +K AK  S   P P        WG L++ RKQ+ W +++   G     V P  W RRS++ +Y  VFQD R+PG+GS+S W        FGG R  R      PRD +       +PD+                                 A  G R R     NF  ++ WLS                 AG    P+AA      TLL++AL   R D G
Sbjct:   52 SKIFHYFGAGSPENGTPRKKRATSTPAAGAAGEVPQLVLRVTKPAKTVS---PPPAPT-----WGKLVEPRKQRRWEMLRRLQGGGLGGVDPTAWARRSYSLSYTPVFQDLRTPGMGSSSGWGWAFQSQVFGGARACRASSSVPPRDRSDETDGNEVPDSVHAT-----------------------------AAAGGRSRALQSRNFKAMVAWLSSSHAASAVXXXXXXXXAAGALRSPRAAADPADKTLLEIAL--ERQDGG 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14212.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNP8_9PHAE5.510e-1028.03Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 171..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14212contigP-wetherbeei_contig14212:768..1695 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14212.1.1mRNA_P-wetherbeei_contig14212.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig14212 635..1695 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig14212.1.1 ID=prot_P-wetherbeei_contig14212.1.1|Name=mRNA_P-wetherbeei_contig14212.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=272bp
MKRGGKKGKSKATTPPSKIYHFFGAAAPSDAAEDAAKPAPKRKAQEENAN
SSSSKCAKRSSASIPSPREVEGDAKWGALIDRRKQKAWALIQETVGVPPD
RWLRRSFTATYRSVFQDERSPGVGSNSQWFAGGTAFGGGRLMRRPRDMAA
ALASASLPDAYPVLVEDQDLEVSEAANDDGGGGDDDEGDAEGEAGYGRRW
RRHDLENFALIMDWLSGAGVCGHPQAATLLDVALGCRRDDAGVSGGGDRR
RGCDFPGCHHSCDLERRDDVQW
back to top