prot_P-wetherbeei_contig14060.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig14060.1.1
Unique Nameprot_P-wetherbeei_contig14060.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length184
Homology
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 2.040e-94
Identity = 156/185 (84.32%), Postives = 167/185 (90.27%), Query Frame = 0
Query:    4 RLYERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 184
            RL+  N + L+ GC+AIQSLES LNGLLG++R+TAG  AM+ALPW NSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRI++G    TLPHF   SLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYD TVRNSEQTIIQFVYGDDGLNP+ ME
Sbjct:  778 RLFNNNRMPLKPGCDAIQSLESELNGLLGKLRETAGTGAMKALPWVNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIQNGFVNRTLPHFEANSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDRTVRNSEQTIIQFVYGDDGLNPSCME 962          
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A7S2RW98_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RW98_9STRA)

HSP 1 Score: 280 bits (716), Expect = 2.870e-93
Identity = 135/179 (75.42%), Postives = 156/179 (87.15%), Query Frame = 0
Query:   10 SLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 184
            +L L+ GCN +QSLE  LNG+LG++R++AGQEAMR LPW N+PRIMAECGSKGSPLN+SQM+ACVGQQ+VGG RI+DG    TLPHF   SL P AKGFVANSFY+GL  TEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLS++YD TVRNSE  ++QF+YGDD LNP++ME
Sbjct:    1 TLELRPGCNLLQSLEEILNGILGKLRESAGQEAMRTLPWSNTPRIMAECGSKGSPLNVSQMMACVGQQAVGGLRIQDGFVNRTLPHFQYHSLIPPAKGFVANSFYTGLAPTEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSLRYDSTVRNSENMVVQFIYGDDYLNPSMME 179          
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A836CEF0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF0_9STRA)

HSP 1 Score: 302 bits (773), Expect = 7.250e-92
Identity = 151/183 (82.51%), Postives = 162/183 (88.52%), Query Frame = 0
Query:    6 YERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 184
            Y +  L L+AGCNA QSLES LNG+LGE+R+TAG  AM+ LPW NSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIE+G    TLPHF T SL+PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYD TVRNSE  ++QFVYGDDGL+P  ME
Sbjct:  757 YRKGQLELKAGCNAEQSLESSLNGVLGELRRTAGDMAMKELPWVNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIENGFVKRTLPHFVTSSLYPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDATVRNSEGAVVQFVYGDDGLSPQCME 939          
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A7S2FN88_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FN88_9STRA)

HSP 1 Score: 280 bits (716), Expect = 9.480e-92
Identity = 137/183 (74.86%), Postives = 157/183 (85.79%), Query Frame = 0
Query:    6 YERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 184
            + R  L L+ GCNA+QSLES L G+LG++R+ AG+ AM  LPW N+PRIMAECGSKGS +NISQMIAC+GQQ+V GKRI++G    TLPHF   SL+PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTA+TGYMARRLMKALEDLSM YD +VRNSE T++QF YGDDGL+PA ME
Sbjct:   74 FNRGRLELKPGCNALQSLESELTGVLGKVREAAGKMAMEKLPWENAPRIMAECGSKGSTINISQMIACLGQQAVDGKRIQNGFVNRTLPHFKPDSLYPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAQTGYMARRLMKALEDLSMHYDNSVRNSESTVVQFTYGDDGLDPASME 256          
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A6H5KI81_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI81_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 2.330e-89
Identity = 148/170 (87.06%), Postives = 157/170 (92.35%), Query Frame = 0
Query:   19 AIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 184
            +I+SLES LNGLLG++R+TAG  AM+ALPW NSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRI++G    TLPHF   SLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYD TVRNSEQTIIQFVYGDDGLNP+ ME
Sbjct:  834 SIKSLESELNGLLGKLRETAGTGAMKALPWVNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIQNGFVNRTLPHFEANSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDRTVRNSEQTIIQFVYGDDGLNPSCME 1003          
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A7S2Q495_9STRA (DNA-directed RNA polymerase n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q495_9STRA)

HSP 1 Score: 285 bits (730), Expect = 6.620e-89
Identity = 139/183 (75.96%), Postives = 160/183 (87.43%), Query Frame = 0
Query:    6 YERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 184
            YE  +L L+ GC+ +QSLE  LNG+LG++R++AGQEAM+ALPW N+PRIMAECGSKGSPLNISQM+ACVGQQ+VGGKRI+DG    TLPHF   SL P AKGFVANSFYSGLTATEF FHTMGGREGLVDTAVKTAETGYMARRLMKALEDLS++YD +VRNSE T++QF YGDD L+P+ ME
Sbjct:  130 YEDGTLELRPGCDLLQSLEEILNGILGKLRESAGQEAMKALPWSNTPRIMAECGSKGSPLNISQMMACVGQQAVGGKRIQDGFVNRTLPHFQYHSLIPPAKGFVANSFYSGLTATEFIFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSLRYDNSVRNSENTVVQFTYGDDSLDPSKME 312          
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A7S4NGV3_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGV3_9STRA)

HSP 1 Score: 290 bits (741), Expect = 1.560e-87
Identity = 142/183 (77.60%), Postives = 159/183 (86.89%), Query Frame = 0
Query:    6 YERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 184
            Y+  +L L+ GCN IQSLE  LNG LG++R++AGQEAM+ALPW N+PR+MAECGSKGSPLNISQMI+CVGQQ+VGG RIE+G    TLPHF   SL PAAKGFVANSFY+GLT TEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYD +VRNSE  ++QFVYGDD LNP LME
Sbjct:  756 YDAGTLELRPGCNLIQSLEEMLNGTLGKLRESAGQEAMKALPWSNTPRVMAECGSKGSPLNISQMISCVGQQAVGGNRIENGFVHRTLPHFEYHSLTPAAKGFVANSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDNSVRNSENVVVQFVYGDDSLNPQLME 938          
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A1E7FAF7_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAF7_9STRA)

HSP 1 Score: 289 bits (740), Expect = 1.950e-87
Identity = 142/184 (77.17%), Postives = 159/184 (86.41%), Query Frame = 0
Query:    5 LYERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 184
            LYE+  L L+ GCN +QSLE  LNG+LG +R++AGQEAM+ LPW N+PRIMA CGSKGSPLNISQMI+CVGQQ+VGG RI++G    TLPHF   SL P+AKGFVANSFY+GLTATEFFFH MGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYD TVRNSE T++QFVYGDDGLNP  ME
Sbjct:  743 LYEKGELELRPGCNLLQSLEEILNGILGRLRESAGQEAMKQLPWSNAPRIMASCGSKGSPLNISQMISCVGQQAVGGLRIQNGFVDRTLPHFEINSLTPSAKGFVANSFYTGLTATEFFFHAMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDKTVRNSENTVVQFVYGDDGLNPNQME 926          
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A448Z7A2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7A2_9STRA)

HSP 1 Score: 289 bits (739), Expect = 2.590e-87
Identity = 141/184 (76.63%), Postives = 159/184 (86.41%), Query Frame = 0
Query:    5 LYERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 184
            LYE   L L+ GC+ +QSLE  LNG+LG +R++AGQEAM+ LPW N+PRIMA CGSKGSPLNISQMI+CVGQQ+VGG RI++G    TLPHF  KSL P+AKGFVANSFY+GLTATEFFFH MGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYD TVRNSE T++QF+YGDDGLNP  ME
Sbjct:  750 LYENGELELRPGCDLLQSLEEILNGILGRLRESAGQEAMKQLPWSNAPRIMAACGSKGSPLNISQMISCVGQQAVGGMRIQNGFVDRTLPHFEVKSLTPSAKGFVANSFYTGLTATEFFFHAMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDKTVRNSENTVVQFIYGDDGLNPNAME 933          
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A7S1FY33_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY33_9STRA)

HSP 1 Score: 288 bits (736), Expect = 8.790e-87
Identity = 142/183 (77.60%), Postives = 160/183 (87.43%), Query Frame = 0
Query:    6 YERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 184
            YE+ SL L+ GC+ +QSLE  LNG+LG++R++AGQEAMR LPW N+PRIMAECGSKGSPLNISQM+ACVGQQ+VGG RI+DG    TLPHF   SL P+AKGFVANSFY+GLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLS  YD TVRNSE T++QF YG+D LNPALME
Sbjct:  832 YEKGSLELRPGCDLLQSLEEILNGVLGKLRESAGQEAMRTLPWTNTPRIMAECGSKGSPLNISQMMACVGQQAVGGNRIQDGFVNRTLPHFEYGSLTPSAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSFHYDSTVRNSENTVVQFHYGNDDLNPALME 1014          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU80_ECTSI2.040e-9484.32DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S2RW98_9STRA2.870e-9375.42DNA-directed RNA polymerase (Fragment) n=1 Tax=Euc... [more]
A0A836CEF0_9STRA7.250e-9282.51DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S2FN88_9STRA9.480e-9274.86DNA-directed RNA polymerase (Fragment) n=1 Tax=Dic... [more]
A0A6H5KI81_9PHAE2.330e-8987.06DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S2Q495_9STRA6.620e-8975.96DNA-directed RNA polymerase n=2 Tax=Skeletonema ma... [more]
A0A7S4NGV3_9STRA1.560e-8777.60DNA-directed RNA polymerase subunit n=1 Tax=Odonte... [more]
A0A1E7FAF7_9STRA1.950e-8777.17DNA-directed RNA polymerase subunit n=1 Tax=Fragil... [more]
A0A448Z7A2_9STRA2.590e-8776.63DNA-directed RNA polymerase subunit n=1 Tax=Pseudo... [more]
A0A7S1FY33_9STRA8.790e-8777.60DNA-directed RNA polymerase subunit n=1 Tax=Coreth... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 7..105
e-value: 1.6E-22
score: 79.5
NoneNo IPR availableGENE3D6.10.250.2940coord: 92..150
e-value: 3.7E-29
score: 102.0
NoneNo IPR availableGENE3D6.20.50.80coord: 151..184
e-value: 9.4E-15
score: 55.8
NoneNo IPR availablePANTHERPTHR19376:SF32DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1coord: 3..184
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 4..184
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 112..177
e-value: 1.1E-30
score: 106.9
IPR038120RNA polymerase Rpb1, funnel domain superfamilyGENE3D1.10.132.30coord: 1..91
e-value: 2.5E-24
score: 87.7
IPR045867DNA-directed RNA polymerase, subunit beta-primePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 3..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14060contigP-wetherbeei_contig14060:79..1136 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14060.1.1mRNA_P-wetherbeei_contig14060.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig14060 79..1136 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig14060.1.1 ID=prot_P-wetherbeei_contig14060.1.1|Name=mRNA_P-wetherbeei_contig14060.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
SFCRLYERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGN
SPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDGTLPHFPTKSLFPA
AKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKAL
EDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007083RNA_pol_Rpb1_4
IPR007081RNA_pol_Rpb1_5
IPR038120Rpb1_funnel_sf
IPR045867DNA-dir_RpoC_beta_prime