prot_P-wetherbeei_contig13617.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig13617.2.1
Unique Name	prot_P-wetherbeei_contig13617.2.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	130

Homology

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BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A1F3YRF4_9PROT (CRM domain-containing protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YRF4_9PROT)

HSP 1 Score: 112 bits (280), Expect = 6.890e-30
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = 0

Query:    1 MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQA-ERDDRRSILEEICSRAGASPVQHIGKILVVYRPKP 89
            MD L+P ERR LKARAH+L+P++ +G+KGLT AV+AE++RAL AHELIKVR    ER  R + L EIC+R  A PVQHIGK+LVVYR KP
Sbjct:    1 MDGLSPIERRKLKARAHALDPIIHLGEKGLTAAVIAEVDRALGAHELIKVRAGGLERHAREAALAEICARLDAQPVQHIGKVLVVYRKKP 90

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BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A1F4C705_9PROT (CRM domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4C705_9PROT)

HSP 1 Score: 112 bits (280), Expect = 8.450e-30
Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = 0

Query:    4 LTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQ-AERDDRRSILEEICSRAGASPVQHIGKILVVYRPKPPEPA 93
            LT AERR+L+ARAH+L+PVV+VG+ GLT  VLAE ERAL  H+LIK+RV  A R DR ++LE +C + GAS VQHIGKILV+YRP P  PA
Sbjct:    2 LTAAERRSLRARAHALDPVVMVGEDGLTPGVLAETERALVTHQLIKIRVAGAGRHDRETVLETLCEQTGASAVQHIGKILVIYRPGPERPA 92

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BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A7C3NSZ4_9PROT (Ribosome assembly RNA-binding protein YhbY n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3NSZ4_9PROT)

HSP 1 Score: 112 bits (279), Expect = 2.080e-29
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 0

Query:    1 MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQAERDDRRSILE-EICSRAGASPVQHIGKILVVYRPKPPE--PAKPPAPRVRKA 103
            M +LTPAERRAL+ARAH L PVV++G  GLT AVL EI+ AL +HELIKVRV  E   RR  L  EIC+   ASPVQHIG++LV+YRP+P E  P  PP P  R+A
Sbjct:    1 MKDLTPAERRALRARAHHLHPVVIIGGAGLTPAVLKEIDAALTSHELIKVRVPGEDRRRRERLAGEICAALDASPVQHIGRVLVLYRPRPEEAGPTTPPQPPPRRA 106

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BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A7C2UNE8_9PROT (YhbY family RNA-binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2UNE8_9PROT)

HSP 1 Score: 111 bits (277), Expect = 4.070e-29
Identity = 63/104 (60.58%), Postives = 75/104 (72.12%), Query Frame = 0

Query:    1 MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQAE-RDDRRSILEEICSRAGASPVQHIGKILVVYRPKPPEPAKPPAPRVRKA 103
            M +LTPA RRAL+ARAH L PVV++G+ GLT AV  EI+  L +HELIK+RV  E R  RR  + EIC    A PVQ IGK+LVVYRP+PPEPA   APR R+A
Sbjct:    1 MIDLTPARRRALRARAHRLRPVVIIGEAGLTPAVRKEIDAGLRSHELIKIRVLGEDRARRREWMSEICRTLEAVPVQEIGKLLVVYRPRPPEPATAAAPRPRRA 104

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BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: UPI0019B88CCA (YhbY family RNA-binding protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019B88CCA)

HSP 1 Score: 109 bits (273), Expect = 8.700e-29
Identity = 58/90 (64.44%), Postives = 70/90 (77.78%), Query Frame = 0

Query:    1 MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQA-ERDDRRSILEEICSRAGASPVQHIGKILVVYRPKP 89
            M+ L+P ER+ LKARAH+L+P+V +G KGLT AV+AEI RAL AHELIKVR    ERD+R S   EIC+R  A PVQHIGK+LV+YR KP
Sbjct:    1 MEGLSPTERKKLKARAHALDPIVHLGGKGLTEAVIAEIGRALDAHELIKVRAGGMERDERESAFTEICTRLAAQPVQHIGKVLVLYRKKP 90

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BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A1F4F0Z8_9PROT (CRM domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F0Z8_9PROT)

HSP 1 Score: 109 bits (272), Expect = 1.010e-28
Identity = 55/84 (65.48%), Postives = 70/84 (83.33%), Query Frame = 0

Query:    4 LTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQA-ERDDRRSILEEICSRAGASPVQHIGKILVVYR 86
            LTPAER+ALKA+AH LEPVV +G KGLTG V+AEIERAL AHELIKVR    +RD+R ++L+EIC+R+GA  VQ +GK+ V++R
Sbjct:    2 LTPAERKALKAKAHKLEPVVQIGAKGLTGEVVAEIERALKAHELIKVRAGGLQRDERDAVLKEICARSGAQAVQQVGKVFVLFR 85

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BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A536WMX7_9PROT (Ribosome assembly RNA-binding protein YhbY n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WMX7_9PROT)

HSP 1 Score: 109 bits (273), Expect = 1.160e-28
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 0

Query:    1 MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQ-AERDDRRSILEEICSRAGASPVQHIGKILVVYRPKP---PEPAKPPAPRVRK 102
            M  L+P  RR LKARAH+L+PVVL+G  GL+ AVLAEIER+L +HELIKVRV  A+R  R +ILEEIC R GA PVQH+GKI++++R  P   P  A+ P  R+R+
Sbjct:    1 MPGLSPTRRRELKARAHALDPVVLIGAAGLSPAVLAEIERSLKSHELIKVRVPGADRSGREAILEEICRRTGAQPVQHVGKIILLFRENPEPSPGSAEDPLRRIRR 106

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BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A238D6B8_THIDL (CRM domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A238D6B8_THIDL)

HSP 1 Score: 111 bits (277), Expect = 1.300e-28
Identity = 61/104 (58.65%), Postives = 83/104 (79.81%), Query Frame = 0

Query:    4 LTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQAE-RDDRRSILEEICSRAGASPVQHIGKILVVYRPKPPEPAKPPAPRVRKASPR 106
            L+PA+R A +A+AHSL+P VL+GD+GLT AV+AEI+RAL AH LIKVRV ++ R+ R ++++ IC   GA+PVQ+IGKILVV+RP P E A  PA +VR A+P+
Sbjct:    6 LSPADRSAKRAQAHSLKPTVLIGDQGLTDAVMAEIDRALTAHGLIKVRVASDDREARAAMMDGICENLGAAPVQNIGKILVVFRPIPAESADAPASKVRGAAPK 109

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BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A521V8H3_9PROT (Ribosome assembly RNA-binding protein YhbY n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521V8H3_9PROT)

HSP 1 Score: 109 bits (272), Expect = 1.430e-28
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 0

Query:    4 LTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQA-ERDDRRSILEEICSRAGASPVQHIGKILVVYRPKPPEPAK 94
            L+PAER+ALKARAH LEPVV +GD G + AV+AE+ERALAAHELIKVR     R+ R   L +IC R  A PVQHIGK+LV+YR KP EP K
Sbjct:    7 LSPAERKALKARAHRLEPVVWIGDDGASDAVIAEVERALAAHELIKVRAAGLAREARELALAQICERCAAQPVQHIGKVLVIYRKKP-EPKK 97

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BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Match: A0A1G3H4C0_9RHOO (CRM domain-containing protein n=1 Tax=Rhodocyclales bacterium GWA2_65_19 TaxID=1802016 RepID=A0A1G3H4C0_9RHOO)

HSP 1 Score: 110 bits (274), Expect = 1.590e-28
Identity = 66/125 (52.80%), Postives = 85/125 (68.00%), Query Frame = 0

Query:    1 MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKVRVQA-ERDDRRSILEEICSRAGASPVQHIGKILVVYRPKPPEPAKP--PAPRVRKASPRKAADRALAARDYTARK 122
            M ELTP +RRAL+A AH L PVV +  KGL  +VL EI+R LA HELIKV++   ERDDR ++L EIC + G +P+QHIG ILV++R KP E A    PAPR R++S      +A+AA +   RK
Sbjct:    1 MTELTPTQRRALRAAAHHLSPVVSIAQKGLAESVLKEIDRCLATHELIKVKLHGIERDDREALLGEICGQLGCAPIQHIGNILVLWREKPAEEAAATQPAPRTRRSSKPLTKKQAVAALERPRRK 125

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig13617.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1F3YRF4_9PROT	6.890e-30	64.44	CRM domain-containing protein n=1 Tax=Betaproteoba...	[more]
A0A1F4C705_9PROT	8.450e-30	64.84	CRM domain-containing protein n=2 Tax=unclassified...	[more]
A0A7C3NSZ4_9PROT	2.080e-29	61.32	Ribosome assembly RNA-binding protein YhbY n=1 Tax...	[more]
A0A7C2UNE8_9PROT	4.070e-29	60.58	YhbY family RNA-binding protein n=1 Tax=Betaproteo...	[more]
UPI0019B88CCA	8.700e-29	64.44	YhbY family RNA-binding protein n=1 Tax=Candidatus...	[more]
A0A1F4F0Z8_9PROT	1.010e-28	65.48	CRM domain-containing protein n=1 Tax=Betaproteoba...	[more]
A0A536WMX7_9PROT	1.160e-28	58.49	Ribosome assembly RNA-binding protein YhbY n=1 Tax...	[more]
A0A238D6B8_THIDL	1.300e-28	58.65	CRM domain-containing protein n=5 Tax=root TaxID=1...	[more]
A0A521V8H3_9PROT	1.430e-28	65.22	Ribosome assembly RNA-binding protein YhbY n=2 Tax...	[more]
A0A1G3H4C0_9RHOO	1.590e-28	52.80	CRM domain-containing protein n=1 Tax=Rhodocyclale...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 35..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..130
None	No IPR available	PANTHER	PTHR40065	RNA-BINDING PROTEIN YHBY	coord: 3..89
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 4..86 e-value: 1.0E-37 score: 141.3
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 4..86 e-value: 9.2E-21 score: 73.8
IPR001890	RNA-binding, CRM domain	PROSITE	PS51295	CRM	coord: 2..97 score: 22.331306
IPR035920	YhbY-like superfamily	GENE3D	3.30.110.60		coord: 2..99 e-value: 2.2E-27 score: 97.0
IPR035920	YhbY-like superfamily	SUPERFAMILY	75471	YhbY-like	coord: 4..92
IPR017924	RNA-binding protein YhbY	TIGRFAM	TIGR00253	TIGR00253	coord: 4..88 e-value: 2.1E-24 score: 83.9

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig13617	contig	P-wetherbeei_contig13617:1388..1777 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig13617.2.1	mRNA_P-wetherbeei_contig13617.2.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig13617 1388..1777 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig13617.2.1 ID=prot_P-wetherbeei_contig13617.2.1|Name=mRNA_P-wetherbeei_contig13617.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MDELTPAERRALKARAHSLEPVVLVGDKGLTGAVLAEIERALAAHELIKV
RVQAERDDRRSILEEICSRAGASPVQHIGKILVVYRPKPPEPAKPPAPRV
RKASPRKAADRALAARDYTARKAAPRIGRA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001890	RNA-binding_CRM
IPR035920	YhbY-like_sf
IPR017924	RNA-binding_YhbY