prot_P-wetherbeei_contig13607.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig13607.2.1
Unique Name	prot_P-wetherbeei_contig13607.2.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	103

Homology

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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A6N7FN44_9ACTN (Sigma70_r4_2 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FN44_9ACTN)

HSP 1 Score: 100 bits (249), Expect = 1.050e-24
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 0

Query:    1 GWVYRVALNWANSTLRRRGGPRRTLHQISLGAIEP-ADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 94
            GWVYRV LNWA S LRRR    R   +     + P A+P ++AA+ +L + +R+V+VCRF+L LSE ETA ALG+RPGTVKSRLHR L  L   L
Sbjct:   64 GWVYRVGLNWATSVLRRRVRAPRPPAERGPSDVGPLAEPDVLAALHELGVKQRSVIVCRFYLGLSEAETAEALGVRPGTVKSRLHRGLRHLQSRL 158

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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A6J6C961_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J6C961_9ZZZZ)

HSP 1 Score: 93.6 bits (231), Expect = 1.390e-21
Identity = 53/101 (52.48%), Postives = 64/101 (63.37%), Query Frame = 0

Query:    1 GWVYRVALNWANSTLRRRGGPRRT-----LHQISLGAIEPADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVELRP 96
            GWVYRV LNW+ S +RRR   RRT          +     +DP +  A+ +L +D+RAVVVCR  L LSEL+TA  LGIRPGTVKSRL RAL +L   L P
Sbjct:  103 GWVYRVGLNWSRSVVRRR---RRTPPIWIARPADVAPTATSDPSIDRALDRLSVDQRAVVVCRLLLGLSELQTADTLGIRPGTVKSRLARALERLQPLLAP 200

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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A7W1E1I8_9ACTN (RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1E1I8_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 2.020e-21
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 0

Query:    1 GWVYRVALNWANSTLRRRGGPRRTLHQISLGAIEP-ADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 94
            GWVYRV LNWA S +RRR      +H+  L  + P A+P + AA+ +LDL  R+VVVCR++L++S  E A AL   PGTVKSRLHRA+  L   L
Sbjct:   90 GWVYRVGLNWATSVVRRRWRRDTEVHR-DLSDVGPIAEPAVRAALAELDLRHRSVVVCRYYLQMSVAEIAAALNTAPGTVKSRLHRAMRTLQSRL 183

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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A2E7A6B1_9ACTN (RNA polymerase subunit sigma n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7A6B1_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 1.450e-19
Identity = 53/97 (54.64%), Postives = 59/97 (60.82%), Query Frame = 0

Query:    1 GWVYRVALNWANSTLRRRGGPRRTLHQISLGAI---EPADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 94
            GWVYRV +NWA S LRR    R     ++ G     E  D  L  A+G L    R VVV RFF+E S  ETA ALGIRPGTVKSRL RAL QL+ EL
Sbjct:  103 GWVYRVGMNWARSWLRRARREREKRPLLAEGEFAEDEIVDVDLERALGSLTPTHRTVVVARFFMEWSVDETAEALGIRPGTVKSRLSRALSQLAGEL 199

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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A2E9XBY5_9ACTN (RNA polymerase subunit sigma n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2E9XBY5_9ACTN)

HSP 1 Score: 87.4 bits (215), Expect = 2.450e-19
Identity = 55/97 (56.70%), Postives = 61/97 (62.89%), Query Frame = 0

Query:    1 GWVYRVALNWANSTLRRRGGP---RRTLHQISLGAIEPADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 94
            GWVYRVA+NWA S LRRR      R  L+  S    E  D  L  A+  L    RAVVV RFF++ S  ETA ALGIRPGTVKSRL+RAL QL V L
Sbjct:   80 GWVYRVAMNWARSWLRRRRREIEKRPLLNFDSSFVDELIDVDLERALDTLSPQSRAVVVARFFMDWSIDETADALGIRPGTVKSRLNRALKQLEVRL 176

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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A350RJF0_9ACTN (RNA polymerase subunit sigma n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A350RJF0_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 5.700e-19
Identity = 52/97 (53.61%), Postives = 59/97 (60.82%), Query Frame = 0

Query:    1 GWVYRVALNWANSTLRRRGGPRRTLHQISLGAI---EPADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 94
            GWVYRV +NWA S LRR    R     ++ G     E  D  L  A+  L    R VVV RFF+E S  ETA ALGIRPGTVKSRL RAL+QL+ EL
Sbjct:  103 GWVYRVGMNWARSWLRRARRERERRPLLAKGEFAEDEIVDVDLERALESLSPTHRTVVVARFFMEWSVDETAEALGIRPGTVKSRLSRALNQLAGEL 199

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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A2E4GQR4_9ACTN (Sigma70_r4_2 domain-containing protein n=4 Tax=Acidimicrobiales TaxID=84993 RepID=A0A2E4GQR4_9ACTN)

HSP 1 Score: 86.7 bits (213), Expect = 7.410e-19
Identity = 52/97 (53.61%), Postives = 59/97 (60.82%), Query Frame = 0

Query:    1 GWVYRVALNWANSTLRRRGGPRRT---LHQISLGAIEPADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 94
            GWVYRVA+NWA S LRR    R     L +      +  D  L  A+  L    R VVV RFF+E S  ETA ALGIRPGTVKSRL RAL+QL+ EL
Sbjct:   99 GWVYRVAMNWARSWLRRARREREKRPLLVKAEFAEDQIVDVDLERALESLAATHRTVVVARFFMEWSVEETAEALGIRPGTVKSRLSRALNQLAGEL 195

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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A7W0SHC8_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0SHC8_9ACTN)

HSP 1 Score: 85.9 bits (211), Expect = 9.280e-19
Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = 0

Query:    1 GWVYRVALNWANSTLRRRGGPRRTLHQISLGA-IEPADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 94
            GWVYRV LNWA S LR+R     +     L   +  +DP L   +  L L+ R+VVV RF+L+ S  + A ALGIRPGTVKSRLHRA+++L V+L
Sbjct:   94 GWVYRVGLNWARSRLRKRKREILSDQPPELSTELTFSDPDLERTVMALPLEARSVVVLRFYLDWSTDDVADALGIRPGTVKSRLHRAMNELRVQL 188

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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A6C7E475_ILUCY (Putative RNA polymerase ECF subfamily sigma factor n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7E475_ILUCY)

HSP 1 Score: 85.1 bits (209), Expect = 1.350e-18
Identity = 55/100 (55.00%), Postives = 61/100 (61.00%), Query Frame = 0

Query:    1 GWVYRVALNWAN----STLRRRGGPRRTLHQISLGAIEP--ADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 94
            GWVYRV LN A     S LRRR  P    HQ +  A +   ADP + AA+  L  D RAVVVCRF L  SE +TA AL IRPGTVKSRL RAL +L   L
Sbjct:   74 GWVYRVGLNHARNGVRSMLRRRQQPP---HQTTAPAADASVADPAIAAALSTLSHDHRAVVVCRFLLGWSEQQTADALSIRPGTVKSRLSRALSKLERRL 170

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BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Match: A0A2E8GL71_9ACTN (Sigma70_r4_2 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8GL71_9ACTN)

HSP 1 Score: 85.9 bits (211), Expect = 1.620e-18
Identity = 56/98 (57.14%), Postives = 63/98 (64.29%), Query Frame = 0

Query:    1 GWVYRVALNWANSTLRR--RGGPRRTLHQISLGAIEP--ADPKLMAAIGQLDLDRRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVEL 94
            GWVYRVA+NWA S LRR  R   +R L  +   AIE    D  L  A+G L    R VVV RFF++ S  ETA ALGIRPGTVKSRL RAL QL+ EL
Sbjct:  104 GWVYRVAMNWARSWLRRTRRERDKRPL-LVKHEAIEDQLVDVDLERALGGLSPGHRTVVVARFFMDWSVDETADALGIRPGTVKSRLSRALDQLANEL 200

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig13607.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6N7FN44_9ACTN	1.050e-24	54.74	Sigma70_r4_2 domain-containing protein (Fragment) ...	[more]
A0A6J6C961_9ZZZZ	1.390e-21	52.48	Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A...	[more]
A0A7W1E1I8_9ACTN	2.020e-21	51.58	RNA polymerase sigma factor n=1 Tax=Actinomycetia ...	[more]
A0A2E7A6B1_9ACTN	1.450e-19	54.64	RNA polymerase subunit sigma n=1 Tax=Acidimicrobia...	[more]
A0A2E9XBY5_9ACTN	2.450e-19	56.70	RNA polymerase subunit sigma n=2 Tax=Actinobacteri...	[more]
A0A350RJF0_9ACTN	5.700e-19	53.61	RNA polymerase subunit sigma n=1 Tax=Acidimicrobia...	[more]
A0A2E4GQR4_9ACTN	7.410e-19	53.61	Sigma70_r4_2 domain-containing protein n=4 Tax=Aci...	[more]
A0A7W0SHC8_9ACTN	9.280e-19	50.53	Sigma-70 family RNA polymerase sigma factor n=1 Ta...	[more]
A0A6C7E475_ILUCY	1.350e-18	55.00	Putative RNA polymerase ECF subfamily sigma factor...	[more]
A0A2E8GL71_9ACTN	1.620e-18	57.14	Sigma70_r4_2 domain-containing protein n=2 Tax=Aci...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 37..99 e-value: 1.4E-16 score: 61.7
IPR013249	RNA polymerase sigma factor 70, region 4 type 2	PFAM	PF08281	Sigma70_r4_2	coord: 40..89 e-value: 5.2E-13 score: 48.4
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 39..90 e-value: 1.62757E-9 score: 47.4842
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 40..91

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig13607	contig	P-wetherbeei_contig13607:1508..1816 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig13607.2.1	mRNA_P-wetherbeei_contig13607.2.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig13607 1508..1816 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig13607.2.1 ID=prot_P-wetherbeei_contig13607.2.1|Name=mRNA_P-wetherbeei_contig13607.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
GWVYRVALNWANSTLRRRGGPRRTLHQISLGAIEPADPKLMAAIGQLDLD
RRAVVVCRFFLELSELETARALGIRPGTVKSRLHRALHQLSVELRPRTVE
EA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036388	WH-like_DNA-bd_sf
IPR013249	RNA_pol_sigma70_r4_t2
IPR013324	RNA_pol_sigma_r3/r4-like