mRNA_P-wetherbeei_contig9997.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9997.1.1
Unique NamemRNA_P-wetherbeei_contig9997.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9997.1.1 vs. uniprot
Match: A0A836CGE1_9STRA (DNA alkylation repair enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGE1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.660e-22
Identity = 78/219 (35.62%), Postives = 120/219 (54.79%), Query Frame = 1 
Query:  289 LSKRASACQRDAATVHAARAEL-DLGEIYEERRRAD-EARREKLDEVRASLRARKAALAKIRGKIEALASGGALAPDLQTMVAAAEDDTQRFKAAMRVEYADLVAVGKALKVEIDAASRKFESWA--TDDAVAAWVGGSAAATAPGSAPESARRAGRAPV--RGDAVHPRSASLATAAASAVTLTARVDALIAHEGGVTGGWPQHEHDTFLRLWVQLQR 927
            L KR +A +RD  T +A + +L D  +  +E  R D +ARR++L ++R  L +R+A L +IR K++ALA+G +   DLQ ++   E     F+  MR+E+  L A  +++  E+ AA+ +FE WA  T DA A                     + R P   R       +A+L+    +   +  R+DA+I +EGG TGGWPQH+HDTFLRLW Q+ +
Sbjct:  329 LQKRTAALERDIGTFYATKTDLQDAAQSLQEEERQDCQARRDELAKIRKQLNSRRAVLKQIREKVDALAAGLSAPDDLQGLMEQLETMLSAFRRGMRLEFESLSAQERSMTRELQAATTRFEDWAKPTQDASAD--------------DADTHNSSRVPTLARSRLSDTVAATLSLECTTERDVAGRIDAIIRNEGGATGGWPQHQHDTFLRLWTQVNK 533
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BLAST of mRNA_P-wetherbeei_contig9997.1.1 vs. uniprot
Match: D8LIR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR4_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.120e-5
Identity = 62/207 (29.95%), Postives = 85/207 (41.06%), Query Frame = 1 
Query:  445 KAALAKIRGKIEALA-SGGALAPDLQTMVAAAEDDTQRFKAAMRVEYADLVAVGKALKVEIDAASRKFESWAT----DDAVAAWVGGSAAATAPGSAPESARRAGRAPVRGD-AVHPRSASLATAAASAVT---------------------LTARVDALIAHEGGVTGGWPQHEHDTFLRLWVQLQ--------RPTRESDAAKTA 960
            KA ++KI+  I  L+ +GG  +  L+ ++   ED+   FK AMR  +  LV   K+L  E++    K + W      D        GS  +TA  +A    R AG   V  D  V  R  +                                  +++ LI  EGG TGGWPQHEHD FLRLW Q +        RP   S A + A
Sbjct:    4 KATMSKIKEDIRHLSVNGGEYSGGLERVMEGLEDELYEFKCAMRKGFDVLVVKEKSLSSEVEELRGKVKEWEKKPRRDVPAMQPTAGSRPSTAAAAATRR-RSAGEEHVTADEGVQERKGADTEEEGKECRGVSNKRSGGDSGQRRRERYGDAVEQINRLIQREGGATGGWPQHEHDCFLRLWTQARSRGPKHEARPPPSSPADRAA 209
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9997.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CGE1_9STRA3.660e-2235.62DNA alkylation repair enzyme-domain-containing pro... [more]
D8LIR4_ECTSI4.120e-529.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9997contigP-wetherbeei_contig9997:4..1457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1130
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_001240.1
Cds size870
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187120.0938466-CDS-P-wetherbeei_contig9997:3..6841683187120.0938466-CDS-P-wetherbeei_contig9997:3..684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9997 4..684 -
1683187120.1033263-CDS-P-wetherbeei_contig9997:805..9941683187120.1033263-CDS-P-wetherbeei_contig9997:805..994Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9997 806..994 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187120.1116924-UTR-P-wetherbeei_contig9997:994..10301683187120.1116924-UTR-P-wetherbeei_contig9997:994..1030Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9997 995..1030 -
1683187120.1212885-UTR-P-wetherbeei_contig9997:1235..14571683187120.1212885-UTR-P-wetherbeei_contig9997:1235..1457Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9997 1236..1457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9997.1.1prot_P-wetherbeei_contig9997.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9997 4..994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9997.1.1

>prot_P-wetherbeei_contig9997.1.1 ID=prot_P-wetherbeei_contig9997.1.1|Name=mRNA_P-wetherbeei_contig9997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=290bp
MKAWMQEARALSKRASACQRDAATVHAARAELDLGEIYEERRRADEARRE
KLDEVRASLRARKAALAKIRGKIEALASGGALAPDLQTMVAAAEDDTQRF
KAAMRVEYADLVAVGKALKVEIDAASRKFESWATDDAVAAWVGGSAAATA
PGSAPESARRAGRAPVRGDAVHPRSASLATAAASAVTLTARVDALIAHEG
GVTGGWPQHEHDTFLRLWVQLQRPTRESDAAKTAAGTGGTPALGATFGGS
SSIAVVAGGEEPPPPRLDAQRRRALLQRAAAALPERGGDE
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mRNA from alignment at P-wetherbeei_contig9997:4..1457-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9997.1.1 ID=mRNA_P-wetherbeei_contig9997.1.1|Name=mRNA_P-wetherbeei_contig9997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1454bp|location=Sequence derived from alignment at P-wetherbeei_contig9997:4..1457- (Phaeothamnion wetherbeei SAG_119_79)
AGCTCGCCCTCTGCCTACTGATCATAGGTTATCACACCGGCCTCAGGCGA
GTTCGAGTTATCAGAGGGAACGCGGGTCATCAGAGGGATTCTCCATTTCG
AAAATTCCAGCCGGCCTGGAAGGGAGGAAGATGTGAGAGAGAAGGACAGG
AAACATTCTCCACAGCTGATACCTACAAACCATTCATCTTCTTTCCTCGC
AGCCAAGCGAGACGAGGGGAAGGTGCGAAGTCTTGGACGCAAAAGTGACC
ATCTCTTCCATTTCAAAACGCTTTCTCCGCGCTAGAACCACCCGGCCGCA
GCTACTCAAAACTGTAAATAGATGTAAACGAAACTGACCATCTGATGTAG
CAAAGCAGTTATGCAACTCAAAGTGACTCCGCGGTTCCCTTTTGCCCTTC
TCTCTCTGGCCTCGGCTCTCCGCACAGGCGGAGCTAACCTCGCTTTGTTG
GACCGTTCCCGCAATGAAGGCGTGGATGCAAGAGGCGCGGGCATTGTCCA
AGCGGGCTTCGGCGTGCCAGCGCGATGCGGCGACCGTCCACGCCGCGCGT
GCGGAACTGGATCTGGGCGAAATCTATGAGGAGCGCCGGCGGGCGGACGA
AGCCAGGAGAGAAAAGCTCGATGAAGTGCGCGCAAGCCTCAGAGCTCGAA
AGGTGCAGTTCCGAAGGAGTGTGCTCGGCTTGTGTACGTGTTAGTTTAAT
TCCCTAATTCCCGTTCCTCTCACAGTCATTATTCAAACCCTGTTGCTCTT
CGTCGCCCTTTCCCTTCGAGCAGGCAGCCTTGGCAAAGATTCGGGGAAAG
ATCGAGGCGCTGGCCAGCGGGGGCGCCCTGGCACCCGACCTCCAAACAAT
GGTGGCAGCAGCCGAGGACGACACCCAGCGCTTCAAGGCGGCGATGCGCG
TCGAGTACGCCGACCTGGTGGCGGTGGGAAAGGCACTCAAAGTCGAAATC
GACGCCGCTTCCCGCAAATTCGAGAGCTGGGCGACCGATGACGCCGTCGC
CGCTTGGGTGGGTGGAAGCGCTGCCGCTACCGCGCCGGGATCCGCGCCGG
AATCCGCGCGCCGCGCCGGCCGGGCGCCGGTGCGCGGCGATGCGGTGCAC
CCGCGCAGCGCGTCTTTGGCGACAGCGGCAGCATCGGCGGTCACGCTTAC
TGCCCGGGTGGACGCCCTGATCGCGCACGAGGGCGGTGTCACAGGCGGCT
GGCCGCAGCACGAGCACGACACCTTCCTGCGCCTCTGGGTCCAGCTGCAG
CGGCCCACCCGCGAATCCGACGCCGCCAAAACCGCCGCCGGAACAGGTGG
AACTCCCGCCTTAGGCGCCACTTTTGGCGGGAGCAGTAGCATCGCCGTGG
TCGCCGGAGGTGAAGAGCCGCCGCCGCCGCGGCTGGACGCGCAGCGGCGG
CGGGCGCTGCTCCAACGGGCAGCGGCGGCACTGCCGGAGCGCGGCGGCGA
CGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9997:4..1457-

>mRNA_P-wetherbeei_contig9997.1.1 ID=mRNA_P-wetherbeei_contig9997.1.1|Name=mRNA_P-wetherbeei_contig9997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=870bp|location=Sequence derived from alignment at P-wetherbeei_contig9997:4..1457- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCGTGGATGCAAGAGGCGCGGGCATTGTCCAAGCGGGCTTCGGC
GTGCCAGCGCGATGCGGCGACCGTCCACGCCGCGCGTGCGGAACTGGATC
TGGGCGAAATCTATGAGGAGCGCCGGCGGGCGGACGAAGCCAGGAGAGAA
AAGCTCGATGAAGTGCGCGCAAGCCTCAGAGCTCGAAAGGCAGCCTTGGC
AAAGATTCGGGGAAAGATCGAGGCGCTGGCCAGCGGGGGCGCCCTGGCAC
CCGACCTCCAAACAATGGTGGCAGCAGCCGAGGACGACACCCAGCGCTTC
AAGGCGGCGATGCGCGTCGAGTACGCCGACCTGGTGGCGGTGGGAAAGGC
ACTCAAAGTCGAAATCGACGCCGCTTCCCGCAAATTCGAGAGCTGGGCGA
CCGATGACGCCGTCGCCGCTTGGGTGGGTGGAAGCGCTGCCGCTACCGCG
CCGGGATCCGCGCCGGAATCCGCGCGCCGCGCCGGCCGGGCGCCGGTGCG
CGGCGATGCGGTGCACCCGCGCAGCGCGTCTTTGGCGACAGCGGCAGCAT
CGGCGGTCACGCTTACTGCCCGGGTGGACGCCCTGATCGCGCACGAGGGC
GGTGTCACAGGCGGCTGGCCGCAGCACGAGCACGACACCTTCCTGCGCCT
CTGGGTCCAGCTGCAGCGGCCCACCCGCGAATCCGACGCCGCCAAAACCG
CCGCCGGAACAGGTGGAACTCCCGCCTTAGGCGCCACTTTTGGCGGGAGC
AGTAGCATCGCCGTGGTCGCCGGAGGTGAAGAGCCGCCGCCGCCGCGGCT
GGACGCGCAGCGGCGGCGGGCGCTGCTCCAACGGGCAGCGGCGGCACTGC
CGGAGCGCGGCGGCGACGAA
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