mRNA_P-wetherbeei_contig9992.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9992.1.1
Unique NamemRNA_P-wetherbeei_contig9992.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9992.1.1 vs. uniprot
Match: D8LE94_ECTSI (Complex1_LYR_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE94_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.570e-19
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   22 QSPKGQAIRRLLRAEFDKNRGEEDPAKIEELKSNAVRGLSNYVLQESGSNDPRLRKRMDTMRQSIVRELRE 234
            +SPKGQ +R +LR EF KN GE DP KIE LK  A+RGLSNY++ ESGSNDP+L+KRM+ ++   + +L++
Sbjct:   28 KSPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQ 98          
BLAST of mRNA_P-wetherbeei_contig9992.1.1 vs. uniprot
Match: W7T1T1_9STRA (Complex1_LYR_dom domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T1T1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.230e-14
Identity = 33/73 (45.21%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   22 QSPKGQAIRRLLRAEFDKNRGEEDPAKIEELKSNAVRGLSNYVLQESGSNDPRLRKRMDTMRQSIVRELREDA 240
            +SPKG A+R++LR+EF KN   +D  ++E+LK NA RGL+NY+L ESGS +P++R RM+     ++++   +A
Sbjct:   36 KSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNA 108          
BLAST of mRNA_P-wetherbeei_contig9992.1.1 vs. uniprot
Match: D0NYH0_PHYIT (Complex1_LYR_dom domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=D0NYH0_PHYIT)

HSP 1 Score: 68.9 bits (167), Expect = 2.380e-13
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   25 SPKGQAIRRLLRAEFDKNRGEEDPAKIEELKSNAVRGLSNYVLQESGSNDPRLRKRMD 198
            S KGQAIR L+R EFDK R E DP KIE LK+NAVRGLSNY++  + S D RL++ M+
Sbjct:   29 SKKGQAIRELVRREFDKGRSETDPEKIEALKANAVRGLSNYLMLANSSKDQRLQEAMN 86          
BLAST of mRNA_P-wetherbeei_contig9992.1.1 vs. uniprot
Match: W2MP41_PHYPR (Complex1_LYR_dom domain-containing protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2MP41_PHYPR)

HSP 1 Score: 68.6 bits (166), Expect = 2.430e-13
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   22 QSPKGQAIRRLLRAEFDKNRGEEDPAKIEELKSNAVRGLSNYVLQESGSNDPRLRKRMD 198
            QS KGQAI+ L+R EFDK R E DP KIE LK+NAVRGLSNY++  + S D RL   M+
Sbjct:   15 QSKKGQAIKELVRREFDKGRSETDPEKIEALKANAVRGLSNYLMLANSSKDQRLHDAMN 73          
BLAST of mRNA_P-wetherbeei_contig9992.1.1 vs. uniprot
Match: A0A482SGE8_9ARCH (LYR motif-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SGE8_9ARCH)

HSP 1 Score: 69.3 bits (168), Expect = 3.880e-13
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   22 QSPKGQAIRRLLRAEFDKNRGEEDPAKIEELKSNAVRGLSNYVLQESGSNDPRLRKRMDTMRQSIVRELRE 234
            +S KG+ IRR+LR EF KN   EDPAKIE+LKSNAVRGL+NY++ ES + D +L+K+ +   +  +++  E
Sbjct:   50 RSQKGENIRRVLRHEFRKNAKLEDPAKIEQLKSNAVRGLANYLMIESATKDTKLQKQANIFAEKEIKDANE 120          
BLAST of mRNA_P-wetherbeei_contig9992.1.1 vs. uniprot
Match: A0A7S2W976_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W976_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.930e-13
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   22 QSPKGQAIRRLLRAEFDKNRGEEDPAKIEELKSNAVRGLSNYVLQESGSNDPRLRKRM 195
            QS KGQA+R  +  EF K++  EDP +IE L++NAVR LSNY+L ESGS DPRLR+RM
Sbjct:   38 QSAKGQALRMTVSMEFRKHQHVEDPKEIEALRANAVRALSNYMLYESGSKDPRLRERM 95          
BLAST of mRNA_P-wetherbeei_contig9992.1.1 vs. uniprot
Match: A0A0W8DJD0_PHYNI (Complex1_LYR_dom domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DJD0_PHYNI)

HSP 1 Score: 66.6 bits (161), Expect = 2.520e-12
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   25 SPKGQAIRRLLRAEFDKNRGEEDPAKIEELKSNAVRGLSNYVLQESGSNDPRLRKRMD 198
            S KGQAI+ L+R EFDK R E DP KIE LK+NAVRGLSNY++  + S D RL   M+
Sbjct:   29 SKKGQAIKELVRREFDKGRSETDPEKIEALKANAVRGLSNYLMLANSSKDQRLHDAMN 86          
BLAST of mRNA_P-wetherbeei_contig9992.1.1 vs. uniprot
Match: G4ZUA9_PHYSP (Complex1_LYR_dom domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=G4ZUA9_PHYSP)

HSP 1 Score: 65.5 bits (158), Expect = 5.480e-12
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   25 SPKGQAIRRLLRAEFDKNRGEEDPAKIEELKSNAVRGLSNYVLQESGSNDPRLRKRMD 198
            S KGQAI+ L+R EF+K R E DP KIE LK+NAVRGLSNY++  + S D RL   M+
Sbjct:   29 SKKGQAIKELVRREFEKGRSETDPEKIEALKANAVRGLSNYLMLANSSKDQRLHNAMN 86          
BLAST of mRNA_P-wetherbeei_contig9992.1.1 vs. uniprot
Match: A0A2D4CFG3_PYTIN (Complex1_LYR_dom domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFG3_PYTIN)

HSP 1 Score: 64.3 bits (155), Expect = 1.520e-11
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   25 SPKGQAIRRLLRAEFDKNRGEEDPAKIEELKSNAVRGLSNYVLQESGSNDPRLRKRM 195
            S KGQAI+ L+R EF+K R E DP KIE LK+NAVRGLSNY++  + S D  L++ M
Sbjct:   29 SKKGQAIKSLIRREFEKGRSETDPEKIEALKANAVRGLSNYLVMANSSKDKNLQQAM 85          
BLAST of mRNA_P-wetherbeei_contig9992.1.1 vs. uniprot
Match: A0A0N7L4H7_PLAHL (Complex 1 LYR protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4H7_PLAHL)

HSP 1 Score: 63.9 bits (154), Expect = 2.150e-11
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   25 SPKGQAIRRLLRAEFDKNRGEEDPAKIEELKSNAVRGLSNYVLQESGSNDPRLRKRMD 198
            S KGQAI+ L+R EFDK R E D  KIE LK+NAVRGLSNY++  + S D RLR  M+
Sbjct:   28 SKKGQAIKDLIRREFDKGRSEVDIEKIETLKANAVRGLSNYLMLANSSKDQRLRDAMN 85          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9992.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE94_ECTSI1.570e-1956.34Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
W7T1T1_9STRA4.230e-1445.21Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
D0NYH0_PHYIT2.380e-1362.07Complex1_LYR_dom domain-containing protein n=3 Tax... [more]
W2MP41_PHYPR2.430e-1361.02Complex1_LYR_dom domain-containing protein n=7 Tax... [more]
A0A482SGE8_9ARCH3.880e-1350.70LYR motif-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S2W976_9STRA6.930e-1362.07Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0W8DJD0_PHYNI2.520e-1260.34Complex1_LYR_dom domain-containing protein n=3 Tax... [more]
G4ZUA9_PHYSP5.480e-1258.62Complex1_LYR_dom domain-containing protein n=11 Ta... [more]
A0A2D4CFG3_PYTIN1.520e-1157.89Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A0N7L4H7_PLAHL2.150e-1160.34Complex 1 LYR protein n=1 Tax=Plasmopara halstedii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9992contigP-wetherbeei_contig9992:31..598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4787.PITG_17701T0
PFAMsComplex1_LYR
Model size252
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.91e-14
EggNOG OGs2CGFU@1|root,2S1BH@2759|Eukaryota,3QG2T@4776|Peronosporales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_001390.1
DescriptionComplex 1 protein (LYR family)
Cds size252
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187119.896412-CDS-P-wetherbeei_contig9992:30..1521683187119.896412-CDS-P-wetherbeei_contig9992:30..152Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9992 31..152 +
1683187119.905747-CDS-P-wetherbeei_contig9992:468..5981683187119.905747-CDS-P-wetherbeei_contig9992:468..598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9992 469..598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9992.1.1prot_P-wetherbeei_contig9992.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9992 31..598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9992.1.1

>prot_P-wetherbeei_contig9992.1.1 ID=prot_P-wetherbeei_contig9992.1.1|Name=mRNA_P-wetherbeei_contig9992.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
MHLTPSPQSPKGQAIRRLLRAEFDKNRGEEDPAKIEELKSNAVRGLSNYV
LQESGSNDPRLRKRMDTMRQSIVRELREDAPPR*
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mRNA from alignment at P-wetherbeei_contig9992:31..598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9992.1.1 ID=mRNA_P-wetherbeei_contig9992.1.1|Name=mRNA_P-wetherbeei_contig9992.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=568bp|location=Sequence derived from alignment at P-wetherbeei_contig9992:31..598+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCTCACTCCTTCTCCGCAGAGTCCAAAAGGGCAAGCGATTCGACG TCTACTGCGAGCGGAATTCGATAAAAACCGCGGCGAAGAAGACCCCGCAA AAATAGAAGAGCTGAAGTCTAAGTGAGTGCTGGCTTTGTTTATTTCTGCG CTCTTGTTCTCCACAGTTCTTTTGTTCTTTGCACCGGACATTTCTTTGGC TTCCTTGCATTTCTGTCGGCATGCATACTTCTTATCTGAATGAAGCCCCG ATAGAAGAAAGAAAGCCATAAGCGCGAGCTTGTTATTTCTCGAGATCAGT ACTCTTTTATTGGCTGGGCAATAAATAGCCCACCCAAGCCGCTTAGTCTG ATGCCCATCACATTGATTCGATTCTGATTCGTTTCCCTGTTTCCTTTCTG CCGCCCGGCACCCAATCGTGTCGTGCTGCGCCGCGCAGCGCGGTGAGGGG CCTTTCCAACTATGTCCTGCAAGAGTCGGGCAGCAACGACCCGCGGCTGA GGAAGCGGATGGACACCATGCGACAGAGCATCGTTAGGGAGCTGCGGGAG GACGCTCCGCCACGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9992:31..598+

>mRNA_P-wetherbeei_contig9992.1.1 ID=mRNA_P-wetherbeei_contig9992.1.1|Name=mRNA_P-wetherbeei_contig9992.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig9992:31..598+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCTCACTCCTTCTCCGCAGAGTCCAAAAGGGCAAGCGATTCGACG
TCTACTGCGAGCGGAATTCGATAAAAACCGCGGCGAAGAAGACCCCGCAA
AAATAGAAGAGCTGAAGTCTAACGCGGTGAGGGGCCTTTCCAACTATGTC
CTGCAAGAGTCGGGCAGCAACGACCCGCGGCTGAGGAAGCGGATGGACAC
CATGCGACAGAGCATCGTTAGGGAGCTGCGGGAGGACGCTCCGCCACGGT
GA
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