mRNA_P-wetherbeei_contig9952.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9952.1.1
Unique NamemRNA_P-wetherbeei_contig9952.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9952.1.1 vs. uniprot
Match: A0A835YNC6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.650e-22
Identity = 58/119 (48.74%), Postives = 74/119 (62.18%), Query Frame = 3
Query:  207 MEPEFSSRAFLKLAIDGKEQG----------TIMIGLSSLCII*CKQLYGTAVPKTVENFERLCTG-TDAGDSYRGTTFYRVVRGLNLQAGGIG--SDTGTSGRSATGTPFGPESFNVK 524
            +EPE +SRA ++L++DGK  G          TI+IGL           YG  VP+TV NFE L  G TD G SY+GTTFY+VV+GLN+QAG +G  S  G +G SA   PFGPE+F V+
Sbjct:    1 VEPEVTSRALMRLSVDGKPAGNTAASCPGAGTIVIGL-----------YGKTVPETVANFEALVMGDTDGGYSYKGTTFYKVVQGLNMQAGAVGDFSGKGLTGLSAKKEPFGPENFEVR 108          
BLAST of mRNA_P-wetherbeei_contig9952.1.1 vs. uniprot
Match: A0A7S2H9L4_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H9L4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.100e-17
Identity = 50/141 (35.46%), Postives = 82/141 (58.16%), Query Frame = 3
Query:  117 RRELLD-TLAKSMLAVGAVAVNKPREAVAVGMEPE-----FSSRAFLKLAIDGKEQGTIMIGLSSLCII*CKQLYGTAVPKTVENFERLCTGTDAGDSYRGTTFYRVVRGLNLQAGGIGSDTGTSGRSATGTPFGPESFNV 521
            RR +++ T++ ++L +G    + P  ++A  ++P       + R +L + I  KE G ++IGL           +G  +PKTVENFE+LC+     +SY GTTFYRV+    +Q G IG  +G +G+SA G+PF P++F +
Sbjct:   49 RRSVIESTISSAILVLG----SNPAPSIAAYIDPNTDLPVVTKRVYLDVQIGDKEPGRLVIGL-----------FGELMPKTVENFEQLCSS----NSYAGTTFYRVLSDFTIQGGAIGDSSGKTGKSAFGSPFEPDNFRL 170          
BLAST of mRNA_P-wetherbeei_contig9952.1.1 vs. uniprot
Match: A0A7S4MQY5_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQY5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 9.460e-16
Identity = 44/104 (42.31%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  213 PEFSSRAFLKLAIDGKEQGTIMIGLSSLCII*CKQLYGTAVPKTVENFERLCTGTDAGDSYRGTTFYRVVRGLNLQAGGIGSDTGTSGRSATGTPFGPESFNVK 524
            P  + R FL + I  +E G I+IGL           YG  +PKT ENFE+LC G    +SY GTTFYR +    +  G I   +G SG+SA G PF P+++N+K
Sbjct:  115 PTITKRVFLDVKIGDEEPGRIVIGL-----------YGELMPKTSENFEKLCEG----NSYGGTTFYRALSEFQISGGAIDDPSGNSGKSAFGAPFEPDNYNLK 203          
BLAST of mRNA_P-wetherbeei_contig9952.1.1 vs. uniprot
Match: D7G0Y5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Y5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.040e-15
Identity = 69/180 (38.33%), Postives = 91/180 (50.56%), Query Frame = 3
Query:   24 HDAMMRALPLPLVLLFAVCCHGFVLMFSSTP--RRELLDTLAKSM-LAVG---AVAVNKPREA-----VAVG-MEPEFSSRAFLKLAIDGKEQGTIMIGLSSLCII*CKQLYGTAVPKTVENFERLCTGTDA-GDSYRGTTFYRVVRGLNLQAGGIGSDTGTSGRSATGTPFGPESFNVK 524
            HD + RA P P                SS+P  R+  L   A ++ L VG   AVA N+  E      +A G  EPE + RAF+ + I     G ++I L           YG  VP TV+NF  L TG +A G SY+GT  YRV+ GLN+Q G IGS +G SG S+TG     E+F++K
Sbjct:   36 HDGVERAQPAP----------------SSSPLSRQAFLGGAAAAIPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQRAFMDITIGDSPSGRLVINL-----------YGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIK 188          
BLAST of mRNA_P-wetherbeei_contig9952.1.1 vs. uniprot
Match: A0A6V2NXR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2NXR4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.230e-15
Identity = 48/140 (34.29%), Postives = 75/140 (53.57%), Query Frame = 3
Query:  117 RRELLDTLAKSMLAVGAVAVNKPREAVAVGMEPE-----FSSRAFLKLAIDGKEQGTIMIGLSSLCII*CKQLYGTAVPKTVENFERLCTGTDAGDSYRGTTFYRVVRGLNLQAGGIGSDTGTSGRSATGTPFGPESFNV 521
            R  +  T++ +ML +G      P  + A  ++P       + R +L + I  KE G + IGL           +G  +PKTV+NFE+LC+     +SY GTTFYRV+    +Q G IG  TG +G+SA G+ F P+++ +
Sbjct:   33 RNAIQTTISSAMLVLG----GNPAPSAAAYLDPNTDPPVVTKRVYLDVQIGDKEPGRLTIGL-----------FGELMPKTVDNFEQLCST----NSYAGTTFYRVLSDFTIQGGAIGDPTGKTGKSAFGSSFEPDNYRL 153          
BLAST of mRNA_P-wetherbeei_contig9952.1.1 vs. uniprot
Match: A0A448Z361_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z361_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.950e-15
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  204 GMEPEFSSRAFLKLAIDGKEQGTIMIGLSSLCII*CKQLYGTAVPKTVENFERLCTGTDAGDSYRGTTFYRVVRGLNLQAGGIGSDTGTSGRSATGTPFGPESFNV 521
            G + E +   +  L IDG + G + +GL           YG+ VPKTVENF++LC  T  GD Y+G++F+R++ G   Q G   +  GT G+S  G  F  E+F++
Sbjct:   55 GTDAEITDTVYFDLTIDGADAGRVEMGL-----------YGSTVPKTVENFKQLCCKTKKGDGYKGSSFHRIIPGFMCQGGDFTNGNGTGGKSIYGRTFEDENFDL 149          
BLAST of mRNA_P-wetherbeei_contig9952.1.1 vs. uniprot
Match: A0A7R9W6P2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6P2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.320e-15
Identity = 45/104 (43.27%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  213 PEFSSRAFLKLAIDGKEQGTIMIGLSSLCII*CKQLYGTAVPKTVENFERLCTGTDAGDSYRGTTFYRVVRGLNLQAGGIGSDTGTSGRSATGTPFGPESFNVK 524
            P  + R +L + I G ++     G   L I     LYG  +PKT ENFERLC G    + Y GTTFYRV+  L +  G IG   G SG+SA G+ F P++FN+K
Sbjct:   16 PRVTKRVYLDVMI-GDDEAAEAEGAGRLVI----GLYGELMPKTAENFERLCEG----NGYAGTTFYRVLSDLQISGGAIGDPKGDSGKSAFGSSFEPDNFNLK 110          
BLAST of mRNA_P-wetherbeei_contig9952.1.1 vs. uniprot
Match: A0A1E7FCA1_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCA1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.650e-14
Identity = 41/106 (38.68%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  213 PEFSSRAFLKLAIDGKEQGTIMIGLSSLCII*CKQLYGTAVPKTVENFERLCTGTDAGDSYRGTTFYRVVRGLNLQAGGIGSDTGTSGRSA--TGTPFGPESFNVK 524
            P+ + R +L +     E+G ++IGL           YG  +PKT ENFE+LC    A +SY GT FYRV+    +Q G IG  +G +G+S+   G  F P++FN+K
Sbjct:    3 PKITKRVYLDVEFGKNEKGRLVIGL-----------YGDIMPKTAENFEKLC----ASNSYAGTNFYRVISDTTIQGGAIGDPSGKTGKSSFDDGKSFEPDNFNIK 93          
BLAST of mRNA_P-wetherbeei_contig9952.1.1 vs. uniprot
Match: M4D517_BRARP (Peptidyl-prolyl cis-trans isomerase n=18 Tax=Brassicaceae TaxID=3700 RepID=M4D517_BRARP)

HSP 1 Score: 76.3 bits (186), Expect = 8.120e-14
Identity = 52/141 (36.88%), Postives = 69/141 (48.94%), Query Frame = 3
Query:  120 RELLDTLAKSMLAVGAVAVNKPREAVAVGMEPEFSSRAFLKLAIDGKEQGTIMIGLSSLCII*CKQLYGTAVPKTVENFERLCTGTDAGDS------YRGTTFYRVVRGLNLQAGGIGSDTGTSGRSATGTPFGPESFNVK 524
            R LL  +A ++  + A+      E   V  + E + R FL + IDG+  G I+IGL           YGTAVPKTVENF  LCTG     S      Y+GT F+R++ G  +Q G I    G    S  G  F  E+F +K
Sbjct:   12 RCLLLLVALTIFLIFALFNTGKEEEKQVIQDFEITHRVFLDVDIDGQRLGRIVIGL-----------YGTAVPKTVENFRALCTGEKGKSSSGKPLHYKGTPFHRIISGFVIQGGDIIHGDGKGSESIYGGTFPDENFKIK 141          
BLAST of mRNA_P-wetherbeei_contig9952.1.1 vs. uniprot
Match: A8BC67_GIAIC (Peptidyl-prolyl cis-trans isomerase n=6 Tax=Giardia intestinalis TaxID=5741 RepID=A8BC67_GIAIC)

HSP 1 Score: 73.9 bits (180), Expect = 2.110e-13
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 3
Query:  207 MEPEFSSRAFLKLAIDGKEQGTIMIGLSSLCII*CKQLYGTAVPKTVENFERLCTGTDAGDSYRGTTFYRVVRGLNLQAGGIGSDTGTSGRSATGTPFGPESFNVK 524
            M    S + F  + I GK  G I +GL           +G+ VPKT ENF++LCTG + G  Y+G+TF+RV+    +Q G   +  GT G+S  G  F  E+F +K
Sbjct:    1 MNSPVSDKVFFDITIGGKPLGRITMGL-----------FGSIVPKTAENFKKLCTG-EMGFGYKGSTFHRVIPKFMIQGGDFTNHNGTGGKSIYGAKFPDENFEIK 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9952.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNC6_9STRA1.650e-2248.74Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S2H9L4_9STRA1.100e-1735.46Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A7S4MQY5_9STRA9.460e-1642.31Peptidyl-prolyl cis-trans isomerase n=2 Tax=Odonte... [more]
D7G0Y5_ECTSI1.040e-1538.33Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A6V2NXR4_9STRA1.230e-1534.29Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylu... [more]
A0A448Z361_9STRA3.950e-1536.79Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudo... [more]
A0A7R9W6P2_9STRA5.320e-1543.27Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudi... [more]
A0A1E7FCA1_9STRA2.650e-1438.68Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
M4D517_BRARP8.120e-1436.88Peptidyl-prolyl cis-trans isomerase n=18 Tax=Brass... [more]
A8BC67_GIAIC2.110e-1337.74Peptidyl-prolyl cis-trans isomerase n=6 Tax=Giardi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9952contigP-wetherbeei_contig9952:57..664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size524
Hectar predicted targeting categorysignal peptide
Exons2
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.5137625-UTR-P-wetherbeei_contig9952:56..2721683187118.5137625-UTR-P-wetherbeei_contig9952:56..272Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9952 57..272 -
1683187118.5476167-UTR-P-wetherbeei_contig9952:632..6641683187118.5476167-UTR-P-wetherbeei_contig9952:632..664Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9952 633..664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.5243933-CDS-P-wetherbeei_contig9952:272..2961683187118.5243933-CDS-P-wetherbeei_contig9952:272..296Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9952 273..296 -
1683187118.5341978-CDS-P-wetherbeei_contig9952:380..6321683187118.5341978-CDS-P-wetherbeei_contig9952:380..632Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9952 381..632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9952.1.1prot_P-wetherbeei_contig9952.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9952 273..632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9952.1.1

>prot_P-wetherbeei_contig9952.1.1 ID=prot_P-wetherbeei_contig9952.1.1|Name=mRNA_P-wetherbeei_contig9952.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MMRALPLPLVLLFAVCCHGFVLMFSSTPRRELLDTLAKSMLAVGAVAVNK
PREAVAVGMEPEFSSRAFLKLAIDGKEQGTIMIGLSSLCII*
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mRNA from alignment at P-wetherbeei_contig9952:57..664-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9952.1.1 ID=mRNA_P-wetherbeei_contig9952.1.1|Name=mRNA_P-wetherbeei_contig9952.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=608bp|location=Sequence derived from alignment at P-wetherbeei_contig9952:57..664- (Phaeothamnion wetherbeei SAG_119_79)
GGTGATTTTCAATTCCTCATCCCCACGACGCGATGATGAGAGCTCTGCCA CTACCACTCGTCTTGCTCTTCGCAGTGTGTTGCCATGGGTTCGTGCTCAT GTTTTCCAGCACGCCGCGGCGTGAGCTTTTGGATACTTTGGCGAAGTCTA TGCTTGCTGTAGGTGCAGTGGCAGTCAACAAGCCGCGTGAGGCCGTCGCT GTGGGCATGGAGCCAGAGTTTTCGAGCCGGGCCTTTTTGAAGCTCGCCAT TGACGGCAAAGAGCAAGGGACGATCATGATTGGAGTGAGTGTGGCTCCAT ACTCTAGTTGCGCCGCATTTGTGTAGGAATATTTTTTTAGTATCGTCCTC TAAGAGATGGTAGTATAGCTCTCTTCTCTCTGCATCATCTAATGCAAGCA GTTGTACGGAACGGCGGTGCCGAAGACCGTCGAAAACTTTGAACGGCTCT GTACCGGAACCGATGCTGGCGACAGCTACAGAGGGACGACATTCTATCGG GTCGTGCGGGGATTAAACCTTCAGGCTGGCGGTATTGGGAGTGACACTGG CACGTCTGGCAGGAGCGCCACTGGGACTCCGTTTGGGCCCGAATCGTTCA ACGTAAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9952:57..664-

>mRNA_P-wetherbeei_contig9952.1.1 ID=mRNA_P-wetherbeei_contig9952.1.1|Name=mRNA_P-wetherbeei_contig9952.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig9952:57..664- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGAGAGCTCTGCCACTACCACTCGTCTTGCTCTTCGCAGTGTGTTG
CCATGGGTTCGTGCTCATGTTTTCCAGCACGCCGCGGCGTGAGCTTTTGG
ATACTTTGGCGAAGTCTATGCTTGCTGTAGGTGCAGTGGCAGTCAACAAG
CCGCGTGAGGCCGTCGCTGTGGGCATGGAGCCAGAGTTTTCGAGCCGGGC
CTTTTTGAAGCTCGCCATTGACGGCAAAGAGCAAGGGACGATCATGATTG
GACTCTCTTCTCTCTGCATCATCTAA
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