mRNA_P-wetherbeei_contig994.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig994.3.2
Unique NamemRNA_P-wetherbeei_contig994.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig994.3.2 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 4.180e-40
Identity = 99/224 (44.20%), Postives = 132/224 (58.93%), Query Frame = 1
Query:  331 HIENEPQAPVVRIFGSTPAGQKVCLHVHGARPYFFIRPLESAEPNEVVRCFSSARALANILAPLESALEAALALSFEAGGAPRDGGNXXXXXXXXXXXXDXXXXXXXXXXXSGAPNRAGAASAPWASRGKSSPQKAVQCLKVVRGRPIYGYCAAEKLFVKVLMRNPSSVGRAAGLLQTGVILGTKFQPYESHIPFLLQVFIDHNLAGMGYIHLRHAIFRGRLPQ 1002
            ++  E + PVVRIFGSTPAGQ+ CLH+HGA PYF +RP+E  E + +   F    +L  +L  LE ALE+A+A S    GAP                             +G   R G    PW   G++  Q  +  L+VVRG P YGY   EKLFVKV + NP+  G+ A +LQ G +L T+FQP+ESH+PFLLQVFID+N++GM Y+HLR+A+F   LP+
Sbjct:   19 YLSEESKLPVVRIFGSTPAGQRSCLHLHGALPYFMVRPMEE-ESSAICAQFEDPGSLNALLPQLEQALESAMASSSGGPGAPS-------------------------LSPAGGAGRGGR---PW---GRNR-QPVLARLEVVRGVPFYGYHGEEKLFVKVYVNNPALTGKVASVLQAGHVLSTRFQPFESHVPFLLQVFIDYNISGMSYVHLRNALFLQPLPE 209          
BLAST of mRNA_P-wetherbeei_contig994.3.2 vs. uniprot
Match: A0A2K3DDR6_CHLRE (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DDR6_CHLRE)

HSP 1 Score: 141 bits (355), Expect = 1.170e-30
Identity = 109/219 (49.77%), Postives = 134/219 (61.19%), Query Frame = 1
Query:  349 QAPVVRIFGSTPAGQKVCLHVHGARPYFFIRPLES--AEPNEVVRCFSSARALANILAPLESALEAALALSFEAGGAPRDGGNXXXXXXXXXXXXDXXXXXXXXXXXSGAPNRAGAASAPWASRGKSSPQKAVQCLKVVRGRPIYGYCAAEKLFVKVLMRNPSSVGRAAGLLQTGVILGTKFQPYESHIPFLLQVFIDHNLAGMGYIHLRHAIFRGRLP 999
            Q PV+RIFGSTPAGQK C+HVH A PYF++   ES    PNE   C          L  +  A+EAA+  S+  G        XXXXXXXXXXXX XXXXXXXXXXX                +G  +P++ V  L++VRGRP YGY   E+LF+KV++ NP  VGR +GLL  G I+G + QP+ESH+PFLLQ  ID NL GMG + L   +FRG LP
Sbjct:   41 QVPVIRIFGSTPAGQKACVHVHRAFPYFYVPYDESFPTTPNEAAVC----------LRRMALAIEAAVRASYMPGRDQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XKGPQAPRQVVHALQLVRGRPFYGYHLQEQLFIKVVLYNPQDVGRVSGLLAGGAIMGVRLQPHESHLPFLLQFKIDFNLLGMGLLRLDRVLFRGDLP 240          
BLAST of mRNA_P-wetherbeei_contig994.3.2 vs. uniprot
Match: A0A8J4BJN2_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BJN2_9CHLO)

HSP 1 Score: 131 bits (329), Expect = 3.790e-30
Identity = 87/217 (40.09%), Postives = 112/217 (51.61%), Query Frame = 1
Query:  355 PVVRIFGSTPAGQKVCLHVHGARPYFFIRPLES--AEPNEVVRCFSSARALANILAPLESALEAALALSFEAGGAPRDGGNXXXXXXXXXXXXDXXXXXXXXXXXSGAPNRAGAASAPWASRGKSSPQKAVQCLKVVRGRPIYGYCAAEKLFVKVLMRNPSSVGRAAGLLQTGVILGTKFQPYESHIPFLLQVFIDHNLAGMGYIHLRHAIFRGRLP 999
            PV+RIFGSTPAGQK CLHVH A PYF++   +S  + P E   C     ALA   A   SA+        +AG    DGG                                   + P A++ +    + V  L++VRGRP YGY   E+L++KVL+ NP  V R A +L  G I+G + QP+ESH+PFLLQ  ID NL GMG + L   IFRG+LP
Sbjct:   47 PVIRIFGSTPAGQKACLHVHRAFPYFYVPYDDSLPSTPKEATVCLRR-MALAIETAVRASAMPGQYQQQ-QAGHQQHDGGGAGP-------------------------------TIPAAAKQR----QVVHALQLVRGRPFYGYHIDEQLYIKVLLYNPQDVSRVANMLAGGAIMGLRLQPHESHLPFLLQFKIDFNLLGMGLLKLDRVIFRGQLP 226          
BLAST of mRNA_P-wetherbeei_contig994.3.2 vs. uniprot
Match: A0A835WRV5_9CHLO (DNA polymerase zeta catalytic subunit n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WRV5_9CHLO)

HSP 1 Score: 138 bits (347), Expect = 1.110e-29
Identity = 103/227 (45.37%), Postives = 130/227 (57.27%), Query Frame = 1
Query:  349 QAPVVRIFGSTPAGQKVCLHVHGARPYFFIRPLES--AEPNEVVRCFSSARALANILAPLESALEAALALSFEAGGAPRD--------GGNXXXXXXXXXXXXDXXXXXXXXXXXSGAPNRAGAASAPWASRGKSSPQKAVQCLKVVRGRPIYGYCAAEKLFVKVLMRNPSSVGRAAGLLQTGVILGTKFQPYESHIPFLLQVFIDHNLAGMGYIHLRHAIFRGRLP 999
            Q PV+RIFGSTPAGQK C+HVH A PYF++   ES    P+E   C          L  +  A+EAA+  S+  G   +         GG       XXXXXX XXXXXXXXXXX   P              ++ P++ V  L++VRGRP YGY   E+LF+KV++ NP  VGR + LL  G I+G + QP+ESH+PFLLQ  ID NL GMG + L   +FRG LP
Sbjct:   41 QVPVIRIFGSTPAGQKACVHVHRAFPYFYVPYDESFPTNPSEAAVC----------LRRMALAIEAAVRASYMPGRDQQQHXXXXXXXGGGAADGDAXXXXXXXXXXXXXXXXXXXXXPGAQ-----------QAGPRQVVHALQLVRGRPFYGYHMEEQLFIKVVLYNPQDVGRVSNLLAGGAIMGVRLQPHESHLPFLLQFKIDFNLLGMGLVRLDRVLFRGELP 246          
BLAST of mRNA_P-wetherbeei_contig994.3.2 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.760e-29
Identity = 98/284 (34.51%), Postives = 129/284 (45.42%), Query Frame = 1
Query:  343 EPQAPVVRIFGSTPAGQKVCLHVHGARPYFFIRPLESAEPNEVVRCFSSARALANILAPLESALEAALALSFEAGGAPRDGGNXXXXXXXXXXXXDXXXXXXXXXXXSGAPNRAGAASAPWASRGKSSPQKAVQCLKVVRGRPIYGYCAAEKLFVK----------------------------------------------------------------VLMRNPSSVGRAAGLLQTGVILGTKFQPYESHIPFLLQVFIDHNLAGMGYIHLRHAIFRGRLPQ 1002
            E + PVV IFGSTPAGQ+ CLH+HGA PYF +RP+E  E + +   F    +L  +L  LE ALE+A+A S    GAP                             +G   R G    PW   G++  Q  +  L+VVRG P YGY   EKLFVK                                                                V + NP+  G+ A +LQ G +L T+FQP+ESH+PFLLQVFID+N++GM Y+HLR+A+F   LP+
Sbjct:   23 ESKLPVVLIFGSTPAGQRSCLHLHGALPYFMVRPMEE-ESSAICAQFEDPGSLNALLPQLEQALESAMASSSGGPGAPS-------------------------LSPAGGAGRGGR---PW---GRTQ-QPVLARLEVVRGVPFYGYHGEEKLFVKDDRVCTLVSYNMRNVESMQCNILKRLRNRAPSPRGVIALVLLPAGLVWRCMPSLNVRLTAFGLKVYVNNPALTGKVASVLQAGHVLSTRFQPFESHVPFLLQVFIDYNISGMSYVHLRNALFLQPLPE 273          
BLAST of mRNA_P-wetherbeei_contig994.3.2 vs. uniprot
Match: A0A835SLF1_CHLIN (DNA-directed DNA polymerase n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SLF1_CHLIN)

HSP 1 Score: 135 bits (341), Expect = 6.020e-29
Identity = 118/257 (45.91%), Postives = 143/257 (55.64%), Query Frame = 1
Query:  349 QAPVVRIFGSTPAGQKVCLHVHGARPYFFIRPLES--AEPNEVVRCFSSARALANILAPLESALEAALALSFEAGGAPRD---------------GGNXXXXXXXXXXXXDXXXXXXXXXXXSGAPNRAGAASAPWASRGKSSPQKAVQCLKVVRGRPIYGYCAAEKLFVKVLMRNPSSVGRAAGLLQTGVILGTKFQPYESHIPFLLQVFIDHNLAGMGYIHLRHAIFRGRL-----PQTCAW-AALVDGTGNDGA 1050
            Q PV+RIFGSTPAGQK C+HVH A PYF++   ES    PNE   C          L  +  A+EAA+  S+  G   RD                  XXXXXXXXXXXX XXXXXXXXXXX                +G  +P++ V  L++VRGRP YGY   E+LF+KV++ NP  VGR +GLL  G ILG + QP+ESH+PFLLQ  ID NL GMG + L   +FRG L     P    W   L+ G G  GA
Sbjct:   41 QVPVIRIFGSTPAGQKACVHVHRAFPYFYVPYDESFPTNPNEAALC----------LRRMALAIEAAVRASYMPG---RDQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGPQAPRQVVHALQLVRGRPFYGYHLDEQLFIKVVLYNPQDVGRVSGLLAGGAILGVRLQPHESHLPFLLQFKIDFNLLGMGLLRLDRVLFRGELSARPRPPPPGWECVLLPGAGRRGA 284          
BLAST of mRNA_P-wetherbeei_contig994.3.2 vs. uniprot
Match: A0A1Y1IS53_KLENI (DNA polymerase zeta catalytic subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IS53_KLENI)

HSP 1 Score: 134 bits (336), Expect = 2.220e-28
Identity = 94/297 (31.65%), Postives = 136/297 (45.79%), Query Frame = 1
Query:  109 GASESALATLSFKMSLSPVDDAALSVKIICADYYLTAASPLEEDGWKLDPETCVKNAVGRELRAQMDMDQTGRVHIENEPQAPVVRIFGSTPAGQKVCLHVHGARPYFFIRPLESAEPNEVVRCFSSARALANILAPLESALEAALALSFEAGGAPRDGGNXXXXXXXXXXXXDXXXXXXXXXXXSGAPNRAGAASAPWASRGKSSPQKAVQCLKVVRGRPIYGYCAAEKLFVKVLMRNPSSVGRAAGLLQTGVILGTKFQPYESHIPFLLQVFIDHNLAGMGYIHLRHAIFRGRLP 999
            G+S S  A  +  +++ P    + SV+++  DYY+  A PL+        + C  +  G  +                  Q PVVRIFGSTP GQK CLH+H A PYF++ P E   P ++    +  R  A       SA+E A+ L+                                                       S+ ++ V    +VRGR IYGY  AE+LF+KV++  P  V R A +LQ+G ILG +FQ YE+HIP+LLQV +D+NL GM ++H   A+FR  +P
Sbjct:   29 GSSPSGAAPAAGTLTVRP----SFSVRLVTIDYYM--ARPLQ------GMDVCYSHFQGTAVA-----------------QVPVVRIFGSTPGGQKTCLHLHQAFPYFYV-PYEDTMPQDLTEALAHVRRFA-------SAVERAMKLTSSV----------------------------------------------------SAKRQHVHGASLVRGRDIYGYHPAEQLFIKVVLYYPQEVNRVATILQSGAILGRRFQAYEAHIPYLLQVMVDYNLVGMAHVHFSRALFRSPVP 236          
BLAST of mRNA_P-wetherbeei_contig994.3.2 vs. uniprot
Match: A0A836BV74_9CHLO (DNA-directed DNA polymerase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BV74_9CHLO)

HSP 1 Score: 127 bits (320), Expect = 2.080e-26
Identity = 102/221 (46.15%), Postives = 122/221 (55.20%), Query Frame = 1
Query:  349 QAPVVRIFGSTPAGQKVCLHVHGARPYFFIRPLES--AEPNEVVRCFSSARALANILAPLESALEAALALSFEAGGAPRDGGNXXXXXXXXXXXXDXXXXXXXXXXXSGAPNRAGAASAPWASRGKSSPQKAVQCLKVVRGRPIYGYCAA--EKLFVKVLMRNPSSVGRAAGLLQTGVILGTKFQPYESHIPFLLQVFIDHNLAGMGYIHLRHAIFRGRLP 999
            Q PV+RIFGSTPAGQK C+HVH A PYF++   ES  A P E           A  L  +  ALEAA+  S   G   +    XXXXXX        XXXXXXXXXX                 G S P++ V  L+VVRGRP YGY     E+L++KV++ NP  V R A LL  G +LG + QP+ESH+PFLLQ  ID NL GMG       +FRG LP
Sbjct:   56 QVPVIRIFGSTPAGQKACVHVHRAFPYFYVPYDESLPATPQEA----------AVFLRRMALALEAAVRASALPGAYQQXXXXXXXXXXTPGGEPGAXXXXXXXXXXXXX------------XXGPSRPRQIVHALQVVRGRPFYGYHGQQDERLYIKVVLYNPQDVSRVASLLGGGAVLGLRMQPHESHLPFLLQFKIDFNLLGMGLARFARVLFRGELP 254          
BLAST of mRNA_P-wetherbeei_contig994.3.2 vs. uniprot
Match: A0A8K1C3N0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3N0_PYTOL)

HSP 1 Score: 125 bits (313), Expect = 1.130e-25
Identity = 88/273 (32.23%), Postives = 122/273 (44.69%), Query Frame = 1
Query:  184 VKIICADYYLTAASPLEEDG-WKLDPETCVKNAVGRELRAQMDMDQTGRVHIENEPQAPVVRIFGSTPAGQKVCLHVHGARPYFFIRPLESAEPNEVVRCFSSARALANILAPLESALEAALALSFEAGGAPRDGGNXXXXXXXXXXXXDXXXXXXXXXXXSGAPNRAGAASAPWASRGKSSPQKAVQCLKVVRGRPIYGYCAAEKLFVKVLMRNPSSVGRAAGLLQTGVILGTKFQPYESHIPFLLQVFIDHNLAGMGYIHLRHAIFRGRLP 999
            ++ +  DYY++A  PL +D  +KL    C + A                       Q PV+R+FG+TPAGQK CLH+HG  PYF+ R    AE + V   F     L  +L  +   LE A               N            +            G   R             S+  K V  L +V+G P YGY    +LFV++ + NP +V     LL++G I   +FQPYE+H+PFLLQVF D+++ GM +IHL H  FR  LP
Sbjct:   12 METVVVDYYMSA--PLPDDALYKLPVSPCYRLAR----------------------QVPVMRVFGATPAGQKACLHIHGLFPYFYFR----AENDPV---FDDVEQLKKLLPRIAMELEKA---------------NELKQKQAKKTTNEESTSTQGNGQRQGRSRR-------------STTSKLVAKLLIVQGMPFYGYHDTPRLFVQIFLYNPRAVASTVQLLESGCIAERRFQPYEAHVPFLLQVFADYHIEGMNHIHLSHVKFRAPLP 225          
BLAST of mRNA_P-wetherbeei_contig994.3.2 vs. uniprot
Match: A0A2P6TTN7_CHLSO (DNA polymerase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TTN7_CHLSO)

HSP 1 Score: 124 bits (310), Expect = 2.830e-25
Identity = 100/221 (45.25%), Postives = 126/221 (57.01%), Query Frame = 1
Query:  349 QAPVVRIFGSTPAGQKVCLHVHGARPYFFIR--PLESAEPNEVVRCFSSARALANILAPLESALEAALALSFEAGGAPRDGGNXXXXXXXXXXXXDXXXXXXXXXXXSGAPNRAGAASAPWASRGKSSPQKAVQCLKVVRGRPIYGYCAAEKLFVKVLMRNPSSVGRAAGLLQTGVILGTKFQPYESHIPFLLQVFIDHNLAGMGYIHLRHAIFRGRLPQT 1005
            Q PVVR++GSTPAGQK CLH+H A PYF++   P    EP E  R F +  A A     LE+AL  A               +   XXXXXXXXX XXXXX       G+P  AG              ++ V  + +VRG P YGY A E L++KVLM NP  VGRAA LL+ G ++G  +QP+ESH+P+LLQ+ ID NL+GMG++ L    FR  LP T
Sbjct:   74 QVPVVRVYGSTPAGQKCCLHLHQAFPYFYLPYPPDVPQEPAEA-RWFLTQLAFA-----LETALNTA---------------SSWQXXXXXXXXXXXXXXXPPGRHGPGSPGSAG------------GQRQRVFSVALVRGTPFYGYHAEECLWIKVLMFNPRDVGRAAELLRGGAVMGRAWQPHESHLPYLLQLKIDFNLSGMGWLRLSAVRFRPPLPAT 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig994.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G846_ECTSI4.180e-4044.20DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A2K3DDR6_CHLRE1.170e-3049.77DNA polymerase zeta catalytic subunit n=1 Tax=Chla... [more]
A0A8J4BJN2_9CHLO3.790e-3040.09Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A835WRV5_9CHLO1.110e-2945.37DNA polymerase zeta catalytic subunit n=1 Tax=Chla... [more]
A0A6H5L0N9_9PHAE1.760e-2934.51DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A835SLF1_CHLIN6.020e-2945.91DNA-directed DNA polymerase n=1 Tax=Chlamydomonas ... [more]
A0A1Y1IS53_KLENI2.220e-2831.65DNA polymerase zeta catalytic subunit n=1 Tax=Kleb... [more]
A0A836BV74_9CHLO2.080e-2646.15DNA-directed DNA polymerase n=1 Tax=Edaphochlamys ... [more]
A0A8K1C3N0_PYTOL1.130e-2532.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P6TTN7_CHLSO2.830e-2545.25DNA polymerase n=1 Tax=Chlorella sorokiniana TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig994contigP-wetherbeei_contig994:5133..7888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G846
Preferred nameAHDC1
PFAMsDNA_pol_B,DNA_pol_B_exo1,DUF4683,zf-C4pol
Model size2150
Max annot lvl2759|Eukaryota
KEGG koko:K02350
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG ModuleM00293
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000228,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016035,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032042,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Exons4
Evalue6.85e-41
EggNOG OGsCOG0417@1|root,KOG0968@2759|Eukaryota
EC2.7.7.7
DescriptionDNA polymerase activity
Cds size2148
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.0784364-CDS-P-wetherbeei_contig994:5132..53331683187118.0784364-CDS-P-wetherbeei_contig994:5132..5333Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig994 5133..5333 +
1683187118.0913746-CDS-P-wetherbeei_contig994:5596..58121683187118.0913746-CDS-P-wetherbeei_contig994:5596..5812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig994 5597..5812 +
1683187118.101347-CDS-P-wetherbeei_contig994:5926..64331683187118.101347-CDS-P-wetherbeei_contig994:5926..6433Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig994 5927..6433 +
1683187118.1116412-CDS-P-wetherbeei_contig994:6664..78881683187118.1116412-CDS-P-wetherbeei_contig994:6664..7888Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig994 6665..7888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig994.3.2prot_P-wetherbeei_contig994.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig994 5133..7888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig994.3.2

>prot_P-wetherbeei_contig994.3.2 ID=prot_P-wetherbeei_contig994.3.2|Name=mRNA_P-wetherbeei_contig994.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=716bp
DEESAKTHSGSKGQAALTPDQDENHRNSATCRLKTKGASESALATLSFKM
SLSPVDDAALSVKIICADYYLTAASPLEEDGWKLDPETCVKNAVGRELRA
QMDMDQTGRVHIENEPQAPVVRIFGSTPAGQKVCLHVHGARPYFFIRPLE
SAEPNEVVRCFSSARALANILAPLESALEAALALSFEAGGAPRDGGNSGG
GGGGGGGGGDGGGNGGGGDGSSGAPNRAGAASAPWASRGKSSPQKAVQCL
KVVRGRPIYGYCAAEKLFVKVLMRNPSSVGRAAGLLQTGVILGTKFQPYE
SHIPFLLQVFIDHNLAGMGYIHLRHAIFRGRLPQTCAWAALVDGTGNDGA
RNDGAGASKCTGGDGSLDSGGGSKAAAAAGGAVAAASVLDTVTRHPLLEP
PARRLWLHGNTPPSFRIAIPTDIRRWQCNQDRKQERARAQRPPRQQVVPQ
PAPSRQQGNAPKLSHQGAAPATAAAAAGSLARAVRPGAASANEGGVAQPA
HSATPAPPQVEGASLGPVAASALAPLRAAAPAGNASAAGIANPYAVPVTV
KPLSASLPPPPPPLVPPAAPPQRGAAPSEAGQAGCFQRRRQRRWWQRHSR
MELEADAAFTDVLNPAQRQLAVARSRAGGRQSRCVASLEEIWSEECERSL
RLEEGSQPLPAAGLELHSSQQRLAADGDKKDGLGAALSSKRQRMHWQHAL
ETIMARHAAPASKQAA
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mRNA from alignment at P-wetherbeei_contig994:5133..7888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig994.3.2 ID=mRNA_P-wetherbeei_contig994.3.2|Name=mRNA_P-wetherbeei_contig994.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2756bp|location=Sequence derived from alignment at P-wetherbeei_contig994:5133..7888+ (Phaeothamnion wetherbeei SAG_119_79)
GACGAAGAGAGCGCGAAAACCCATTCCGGAAGCAAAGGACAAGCGGCGCT GACCCCAGATCAGGACGAAAATCATCGGAATTCCGCAACATGTAGACTGA AAACCAAGGGAGCGAGTGAATCTGCACTCGCAACTTTGTCTTTCAAGATG TCCTTGTCTCCTGTAGACGACGCTGCATTGAGCGTTAAAATTATCTGTGC GGTGAGTGAATGGCATGAGCTGGCTGCAAAATCTTCACATTTTGGTCCTG CTGAAGAGAAAGGATTTAGGCTCTCAACCTATTTGAAAACACCATCATTG CGTCCGCACACAAGTTGAGTCGACCTTGCTTTTTCGTTTAATAATATTTT CTTTAGTAAGAAGGTCGCGTATATAAGCCTTCTGGCCCCTTTTGACCTGA AATGTTGTCGACTTGTTTCAGCGTCAATGCCTCTGCGTTCGATGCCACTG TCTTTCATGGGCAGGATTACTATCTGACGGCTGCCTCGCCTCTCGAAGAG GACGGATGGAAGCTCGACCCCGAAACTTGCGTTAAAAACGCGGTGGGAAG AGAGCTGCGGGCGCAAATGGACATGGACCAGACAGGGCGTGTGCACATCG AGAACGAGCCACAAGCTCCGGTCGTCCGCATCTTCGGGAGCACGCCAGCT GGACAGAAAGTCTGTCTGCACGTCCACGGGGTGAGAGCGAAAAGGGGGCG CTTTTGCAGCTGTCCATGAGAACCGACTGAGACGGCCGTTTCCTACAGTG ATGTTGAGGCTCCAACCCGCATTTGCTATGCTTGCTGCCGGCAGGCACGA CCGTATTTCTTCATTCGCCCGCTGGAGAGCGCCGAGCCCAACGAGGTCGT CCGCTGCTTCTCGAGCGCCCGGGCGCTGGCGAACATACTGGCGCCGCTCG AATCTGCCCTCGAGGCCGCCCTGGCATTGTCCTTTGAGGCCGGCGGCGCT CCGAGAGATGGCGGCAATAGCGGCGGCGGCGGCGGCGGTGGAGGAGGCGG CGGCGACGGCGGTGGAAACGGCGGCGGCGGCGATGGCAGTAGCGGTGCCC CAAACCGCGCCGGCGCGGCATCAGCGCCGTGGGCCAGCCGTGGCAAGAGC TCTCCGCAGAAGGCGGTGCAGTGTCTGAAGGTGGTCCGCGGGCGGCCGAT CTATGGCTACTGCGCCGCAGAGAAGCTCTTCGTCAAGGTGCTGATGCGGA ACCCATCGTCGGTGGGGCGGGCGGCGGGCCTGCTGCAGACGGGTGTCATC CTCGGCACCAAGTTCCAGCCGTACGAGAGCCATATCCCGTTCCTGCTGCA GGCGAGTATTGGTTTGTGCATAGCATACTTTGACCAGCATACTTTGACCA GTCTATCACCTGAAGCTTCACTCCTCAGGAGTCCTTTGTTGTTTTCCTTG CCGCTTCTTTGGGCAGTTTGCTTCGTTCTAAGCTCATTTCGGCCGTCCCC TACAACGCTGAAACCATTTTTTGAAGTTCTTATTTCTCATCGTTTTGTGA TGTAGAACTCAGGTTTTCTCCTTTGCTTCCAGGTCTTCATCGACCACAAC CTGGCCGGCATGGGCTACATTCATTTGCGGCACGCCATCTTCCGCGGTCG CCTCCCGCAAACCTGCGCGTGGGCGGCGCTGGTGGACGGCACTGGGAACG ACGGCGCTAGGAACGATGGCGCTGGGGCTTCGAAATGCACTGGTGGCGAT GGTTCCCTGGACAGTGGTGGCGGTTCCAAAGCGGCGGCTGCGGCCGGCGG CGCGGTCGCTGCTGCATCAGTGCTGGATACGGTGACGAGGCACCCGCTTC TGGAGCCGCCGGCACGGCGGCTGTGGCTCCACGGCAACACGCCGCCAAGC TTCCGGATCGCCATCCCAACCGACATTCGGCGGTGGCAGTGCAACCAGGA CCGGAAGCAGGAGCGGGCGAGGGCTCAGAGACCGCCGCGGCAGCAGGTGG TGCCGCAGCCGGCGCCGTCCCGGCAGCAGGGCAATGCGCCGAAGCTGTCG CATCAGGGCGCTGCACCTGCGACTGCTGCTGCGGCTGCAGGATCCCTTGC AAGAGCAGTGCGGCCGGGCGCTGCGTCGGCGAACGAAGGCGGCGTGGCGC AGCCAGCGCACTCGGCAACACCTGCGCCGCCGCAGGTGGAAGGCGCATCG CTGGGTCCAGTGGCGGCGTCGGCGTTAGCGCCCTTGCGGGCCGCGGCGCC GGCTGGCAACGCTTCGGCGGCGGGTATTGCGAACCCGTATGCTGTGCCTG TGACAGTTAAGCCGTTGTCTGCATCACTGCCGCCGCCGCCGCCGCCGCTG GTGCCGCCGGCCGCGCCACCCCAGCGCGGAGCCGCTCCGTCGGAAGCAGG GCAGGCGGGTTGCTTTCAGCGGCGCCGCCAGCGACGCTGGTGGCAGCGGC ACTCCCGGATGGAGCTGGAAGCAGACGCCGCCTTCACCGACGTCTTGAAC CCGGCACAGCGCCAGCTGGCCGTCGCCCGCAGCCGGGCCGGCGGCCGGCA GTCGCGCTGCGTGGCAAGCCTCGAGGAGATCTGGAGCGAGGAGTGCGAAC GGTCCCTGCGCTTGGAGGAAGGCTCGCAGCCGTTGCCGGCGGCGGGCCTG GAGCTTCACAGCAGCCAGCAGAGGCTCGCCGCCGACGGTGATAAAAAGGA CGGGCTCGGGGCGGCCCTTTCATCGAAGCGACAGCGGATGCACTGGCAGC ACGCGTTGGAGACGATCATGGCCAGGCACGCCGCGCCGGCATCGAAGCAG GCAGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig994:5133..7888+

>mRNA_P-wetherbeei_contig994.3.2 ID=mRNA_P-wetherbeei_contig994.3.2|Name=mRNA_P-wetherbeei_contig994.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2148bp|location=Sequence derived from alignment at P-wetherbeei_contig994:5133..7888+ (Phaeothamnion wetherbeei SAG_119_79)
GACGAAGAGAGCGCGAAAACCCATTCCGGAAGCAAAGGACAAGCGGCGCT
GACCCCAGATCAGGACGAAAATCATCGGAATTCCGCAACATGTAGACTGA
AAACCAAGGGAGCGAGTGAATCTGCACTCGCAACTTTGTCTTTCAAGATG
TCCTTGTCTCCTGTAGACGACGCTGCATTGAGCGTTAAAATTATCTGTGC
GGATTACTATCTGACGGCTGCCTCGCCTCTCGAAGAGGACGGATGGAAGC
TCGACCCCGAAACTTGCGTTAAAAACGCGGTGGGAAGAGAGCTGCGGGCG
CAAATGGACATGGACCAGACAGGGCGTGTGCACATCGAGAACGAGCCACA
AGCTCCGGTCGTCCGCATCTTCGGGAGCACGCCAGCTGGACAGAAAGTCT
GTCTGCACGTCCACGGGGCACGACCGTATTTCTTCATTCGCCCGCTGGAG
AGCGCCGAGCCCAACGAGGTCGTCCGCTGCTTCTCGAGCGCCCGGGCGCT
GGCGAACATACTGGCGCCGCTCGAATCTGCCCTCGAGGCCGCCCTGGCAT
TGTCCTTTGAGGCCGGCGGCGCTCCGAGAGATGGCGGCAATAGCGGCGGC
GGCGGCGGCGGTGGAGGAGGCGGCGGCGACGGCGGTGGAAACGGCGGCGG
CGGCGATGGCAGTAGCGGTGCCCCAAACCGCGCCGGCGCGGCATCAGCGC
CGTGGGCCAGCCGTGGCAAGAGCTCTCCGCAGAAGGCGGTGCAGTGTCTG
AAGGTGGTCCGCGGGCGGCCGATCTATGGCTACTGCGCCGCAGAGAAGCT
CTTCGTCAAGGTGCTGATGCGGAACCCATCGTCGGTGGGGCGGGCGGCGG
GCCTGCTGCAGACGGGTGTCATCCTCGGCACCAAGTTCCAGCCGTACGAG
AGCCATATCCCGTTCCTGCTGCAGGTCTTCATCGACCACAACCTGGCCGG
CATGGGCTACATTCATTTGCGGCACGCCATCTTCCGCGGTCGCCTCCCGC
AAACCTGCGCGTGGGCGGCGCTGGTGGACGGCACTGGGAACGACGGCGCT
AGGAACGATGGCGCTGGGGCTTCGAAATGCACTGGTGGCGATGGTTCCCT
GGACAGTGGTGGCGGTTCCAAAGCGGCGGCTGCGGCCGGCGGCGCGGTCG
CTGCTGCATCAGTGCTGGATACGGTGACGAGGCACCCGCTTCTGGAGCCG
CCGGCACGGCGGCTGTGGCTCCACGGCAACACGCCGCCAAGCTTCCGGAT
CGCCATCCCAACCGACATTCGGCGGTGGCAGTGCAACCAGGACCGGAAGC
AGGAGCGGGCGAGGGCTCAGAGACCGCCGCGGCAGCAGGTGGTGCCGCAG
CCGGCGCCGTCCCGGCAGCAGGGCAATGCGCCGAAGCTGTCGCATCAGGG
CGCTGCACCTGCGACTGCTGCTGCGGCTGCAGGATCCCTTGCAAGAGCAG
TGCGGCCGGGCGCTGCGTCGGCGAACGAAGGCGGCGTGGCGCAGCCAGCG
CACTCGGCAACACCTGCGCCGCCGCAGGTGGAAGGCGCATCGCTGGGTCC
AGTGGCGGCGTCGGCGTTAGCGCCCTTGCGGGCCGCGGCGCCGGCTGGCA
ACGCTTCGGCGGCGGGTATTGCGAACCCGTATGCTGTGCCTGTGACAGTT
AAGCCGTTGTCTGCATCACTGCCGCCGCCGCCGCCGCCGCTGGTGCCGCC
GGCCGCGCCACCCCAGCGCGGAGCCGCTCCGTCGGAAGCAGGGCAGGCGG
GTTGCTTTCAGCGGCGCCGCCAGCGACGCTGGTGGCAGCGGCACTCCCGG
ATGGAGCTGGAAGCAGACGCCGCCTTCACCGACGTCTTGAACCCGGCACA
GCGCCAGCTGGCCGTCGCCCGCAGCCGGGCCGGCGGCCGGCAGTCGCGCT
GCGTGGCAAGCCTCGAGGAGATCTGGAGCGAGGAGTGCGAACGGTCCCTG
CGCTTGGAGGAAGGCTCGCAGCCGTTGCCGGCGGCGGGCCTGGAGCTTCA
CAGCAGCCAGCAGAGGCTCGCCGCCGACGGTGATAAAAAGGACGGGCTCG
GGGCGGCCCTTTCATCGAAGCGACAGCGGATGCACTGGCAGCACGCGTTG
GAGACGATCATGGCCAGGCACGCCGCGCCGGCATCGAAGCAGGCAGCT
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