mRNA_P-wetherbeei_contig9939.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9939.2.1
Unique NamemRNA_P-wetherbeei_contig9939.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9939.2.1 vs. uniprot
Match: D8LT32_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT32_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.260e-23
Identity = 57/123 (46.34%), Postives = 73/123 (59.35%), Query Frame = 1 
Query:   43 MASGEAALSSELRSNEYIAAYLDPELGQIETKFYVYESLDSSAYAMGLIVDPCKGQSYDCCHRRYGTPQYAVDAAGD-GSYRVVSKSVFLSATEPVSTGTLVDEFGEDVSDDNSRFADDEVYI 408
            M   EA L++ L+  EY+     PE    +T  +VYE  DSS Y +G+IVDPCKG SYDCC R YG P+Y +    D  SYRVV K +F   TE ++   +VD+ G  V    SRFADDE+ I
Sbjct:    1 MEKAEADLTASLKGGEYVEDVFFPERQYADTDIFVYEYPDSSDYTIGIIVDPCKGNSYDCCDRFYGAPEYPMLIDLDQSSYRVVDKYLFADTTEILANTVIVDKEGVTVPTAYSRFADDEIVI 123
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BLAST of mRNA_P-wetherbeei_contig9939.2.1 vs. uniprot
Match: A0A835YPT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPT0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.650e-18
Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 1 
Query:   43 MASGEAALSSELRSNEYIAAYLDPELGQIETKFYVYESLDSSAYAMGLIVDPCKGQSYDCCHRRYGTPQYAVDAAGDGSY--RVVSKSVFLSATEPVSTGTLVDEFGEDVSDDNSRFADDEVYID 411
            MA  EA L +EL S +Y+   L P+        Y ++   +S YA+G++VDPCKG +++CC R YG P+Y +  A DG+   R V+K V  + T+ +   TL+DE G+++    S   DDE  +D
Sbjct:    1 MAEEEALLRAELESGDYVETTLHPDRSYFNPDVYTFDYPRASDYAIGILVDPCKGNAHNCCMRSYGAPEYRMLRAADGNATARAVAKLVHAAPTDILRDVTLIDEDGQEIDPAASCLPDDETAVD 125
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BLAST of mRNA_P-wetherbeei_contig9939.2.1 vs. uniprot
Match: A0A7S3HMD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMD1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.890e-10
Identity = 40/135 (29.63%), Postives = 68/135 (50.37%), Query Frame = 1 
Query:    7 QYREGTAKYEEVMASGEAALSSELRSNEYIAAYLDPELGQIETKFYVYESLDSSAYAMGLIVDPCKGQSYDCCHRRYGTPQY-AVDAAGDGSYRVVSKSVFLSATEPVSTGTLVDEFGEDVSDDNSRFADDEVYI 408
            QY   TA+Y++ MA     L  ++R++  +    +P+   I    YV++   SS Y +G+++DPC+  SY+CC   +G+P+Y A+  +G  + R    +V  +  E  S   LV+E    +     R ADD    
Sbjct:   29 QYSNDTAQYQQGMAEEVKLLDEQIRTHPDVNFLFNPDSVLIYADNYVFDFPLSSKYRIGILIDPCRFNSYNCCVNVFGSPEYPALLTSGLEAERAYKYAVIANENETASNYFLVNEDSGSIDTTAIRGADDSAVF 163
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9939.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LT32_ECTSI1.260e-2346.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPT0_9STRA2.650e-1837.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3HMD1_9STRA3.890e-1029.63Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9939contigP-wetherbeei_contig9939:1529..2417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LT32
Model size411
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.06e-24
EggNOG OGs2CM7C@1|root,2QPIH@2759|Eukaryota
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.8844569-CDS-P-wetherbeei_contig9939:1528..16511683187117.8844569-CDS-P-wetherbeei_contig9939:1528..1651Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9939 1529..1651 +
1683187117.8941152-CDS-P-wetherbeei_contig9939:1858..20321683187117.8941152-CDS-P-wetherbeei_contig9939:1858..2032Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9939 1859..2032 +
1683187117.9027581-CDS-P-wetherbeei_contig9939:2303..24171683187117.9027581-CDS-P-wetherbeei_contig9939:2303..2417Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9939 2304..2417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9939.2.1prot_P-wetherbeei_contig9939.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9939 1529..2417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9939.2.1

>prot_P-wetherbeei_contig9939.2.1 ID=prot_P-wetherbeei_contig9939.2.1|Name=mRNA_P-wetherbeei_contig9939.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MAQYREGTAKYEEVMASGEAALSSELRSNEYIAAYLDPELGQIETKFYVY
ESLDSSAYAMGLIVDPCKGQSYDCCHRRYGTPQYAVDAAGDGSYRVVSKS
VFLSATEPVSTGTLVDEFGEDVSDDNSRFADDEVYID
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mRNA from alignment at P-wetherbeei_contig9939:1529..2417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9939.2.1 ID=mRNA_P-wetherbeei_contig9939.2.1|Name=mRNA_P-wetherbeei_contig9939.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=889bp|location=Sequence derived from alignment at P-wetherbeei_contig9939:1529..2417+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCAGTACCGCGAGGGCACGGCAAAGTACGAAGAGGTCATGGCGTC
GGGAGAGGCGGCGTTGTCGAGCGAGCTGCGCTCGAACGAATATATTGCTG
CATACCTCGACCCGGAGCTCGGGGTAAGACTTGCCTTTGCTTTCTTTTCT
CTTCCCTCTTCAACAAAAAAGGGCATCCTCATTGGCCTTGTTTGACAGTG
ATCCCATTTTTTCCTTTTACCATTCACGTCATATCGAGTTATTTGAACCA
AGAGATCCCTAGGTGCCACCCCTTCCCCAAATCTTTACTCCGCAGTACAC
CGTCACTCTGCTGCCTGCCTCCTTTTGCAGCAAATCGAGACCAAGTTCTA
CGTCTACGAGTCGCTGGACAGCTCCGCCTACGCCATGGGACTCATCGTGG
ACCCGTGCAAGGGCCAGAGCTACGACTGCTGCCACCGCCGCTACGGCACC
CCGCAGTATGCCGTCGACGCCGCCGGCGACGGCAGCTACCGCGTCGTCAG
CAAAGTAAATGCACCCGCCCGTCTGTTGCTTTGCTTCTCGAGCGGCATTA
GTATCGGGTTGTTCTGCAGCTGTTTGATGCGTTACGGGATGTGCTGTGCT
GTGGTTCGGGCCAACTTTCCCAGATTGTCTCCTGTCCTCAACCCCAAAAT
TCTGCTCCTACTGCCGCCACTGTGCCCGCGTCGTCGCCACCGACATCGCC
GCCGACGCCGCAAACGAGTAACGAACCAAATGGAAAAACTCGTTGGACAA
TGAACCGCCATTCCCCCCAAATCAGTCAGTGTTTCTGTCGGCGACGGAGC
CGGTGTCGACGGGCACGCTGGTGGACGAATTCGGGGAGGACGTCTCCGAC
GACAACAGCCGATTCGCGGACGACGAAGTCTATATCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9939:1529..2417+

>mRNA_P-wetherbeei_contig9939.2.1 ID=mRNA_P-wetherbeei_contig9939.2.1|Name=mRNA_P-wetherbeei_contig9939.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig9939:1529..2417+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCAGTACCGCGAGGGCACGGCAAAGTACGAAGAGGTCATGGCGTC
GGGAGAGGCGGCGTTGTCGAGCGAGCTGCGCTCGAACGAATATATTGCTG
CATACCTCGACCCGGAGCTCGGGCAAATCGAGACCAAGTTCTACGTCTAC
GAGTCGCTGGACAGCTCCGCCTACGCCATGGGACTCATCGTGGACCCGTG
CAAGGGCCAGAGCTACGACTGCTGCCACCGCCGCTACGGCACCCCGCAGT
ATGCCGTCGACGCCGCCGGCGACGGCAGCTACCGCGTCGTCAGCAAATCA
GTGTTTCTGTCGGCGACGGAGCCGGTGTCGACGGGCACGCTGGTGGACGA
ATTCGGGGAGGACGTCTCCGACGACAACAGCCGATTCGCGGACGACGAAG
TCTATATCGAT
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