mRNA_P-wetherbeei_contig9939.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9939.1.1
Unique NamemRNA_P-wetherbeei_contig9939.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9939.1.1 vs. uniprot
Match: D7G565_ECTSI (Protein-ribulosamine 3-kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G565_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.470e-16
Identity = 42/57 (73.68%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:  460 QAIAATGCLRTPRPLATGELPLGGSFLLMGFEPFIPFGQSIPTVIAELAEGLAKMHL 630
            +AI  TGCLR P+PLA G LPLGGSFLLM   PFIPFGQSIP V+  LAEGLA MHL
Sbjct:  160 EAILETGCLRAPKPLALGTLPLGGSFLLMEHMPFIPFGQSIPEVLRNLAEGLAAMHL 216
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BLAST of mRNA_P-wetherbeei_contig9939.1.1 vs. uniprot
Match: A0A835YJQ4_9STRA (Protein-ribulosamine 3-kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJQ4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.950e-15
Identity = 46/116 (39.66%), Postives = 62/116 (53.45%), Query Frame = 3 
Query:    9 AVAWLGGS--LRTPLSHHSKP------------------LSMTATNDVPTGLRDVIVETLNGLGCGDVTRVREVTPGPGLHNRHFRYDTTESSYLAKLSRRGSIADYDAEIAGLEV 296
            A+ W+GG+  L  PL H+ K                    S  A    P GLRDV++E L   G G VT V++V+PGPGLH RHF+YDT +  +L K+S R S   + AE+A L+ 
Sbjct:   18 ALLWVGGAWALVPPLHHNVKAGVVQQRCTSTRNRRASLSASAYAHEAAPDGLRDVVIEALVQHGAGGVTSVKDVSPGPGLHTRHFKYDTADGPFLCKVSERSSDDHFKAEMASLQA 133
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BLAST of mRNA_P-wetherbeei_contig9939.1.1 vs. uniprot
Match: A0A0G4FFG3_VITBC (Protein-ribulosamine 3-kinase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FFG3_VITBC)

HSP 1 Score: 69.7 bits (169), Expect = 1.580e-10
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 3 
Query:   90 VPTGLRDVIVETLNGLGCGDVTRVREVTPGPGLHNRHFRYDTTESSYLAKLSRRGSIADYDAEIAGLEV 296
            +P  LRD ++E +  +G G VT V+EVTPGPGL NRHF Y  T  ++L K + R + A++  E+  L  
Sbjct:   23 IPALLRDPVIEKIEEIGGGKVTEVKEVTPGPGLFNRHFLYTATGGTFLCKQNERNTTANFRCEMESLNA 91
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BLAST of mRNA_P-wetherbeei_contig9939.1.1 vs. uniprot
Match: A0A7S2VN62_9DINO (Protein-ribulosamine 3-kinase (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VN62_9DINO)

HSP 1 Score: 56.6 bits (135), Expect = 2.620e-6
Identity = 39/92 (42.39%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:  355 LLRNGARALARYNRNHGFFIAFPFHAFPSATPIASQAIAATGC-LRTPRPLATGELPLGGSFLLMGFEPFIPFGQSIPTVIAELAEGLAKMH 627
            L R G   LA+ NR     +         A  + + A AA G  +  PRP A G LP GGSFL+M F  F+PFG SIP V+  L  GLA +H
Sbjct:   28 LRRGGGDLLAKVNRAPQDVLE------AEAAGLEALAAAAEGTGVVVPRPHALGSLP-GGSFLVMDFLQFVPFGPSIPAVLERLGRGLAAIH 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9939.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G565_ECTSI2.470e-1673.68Protein-ribulosamine 3-kinase n=2 Tax=Ectocarpus T... [more]
A0A835YJQ4_9STRA1.950e-1539.66Protein-ribulosamine 3-kinase n=1 Tax=Tribonema mi... [more]
A0A0G4FFG3_VITBC1.580e-1043.48Protein-ribulosamine 3-kinase n=2 Tax=Vitrella bra... [more]
A0A7S2VN62_9DINO2.620e-642.39Protein-ribulosamine 3-kinase (Fragment) n=1 Tax=B... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9939contigP-wetherbeei_contig9939:140..988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G565
PFAMsFructosamin_kin
Model size630
Max annot lvl2759|Eukaryota
KEGG koko:K15523
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.67e-18
EggNOG OGsCOG3001@1|root,KOG3021@2759|Eukaryota
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-14_006380.1
EC2.7.1.172
Descriptionprotein-ribulosamine 3-kinase activity
Cds size363
COG categoryG
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.8354151-CDS-P-wetherbeei_contig9939:139..5021683187117.8354151-CDS-P-wetherbeei_contig9939:139..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9939 140..502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.8476808-UTR-P-wetherbeei_contig9939:502..6111683187117.8476808-UTR-P-wetherbeei_contig9939:502..611Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9939 503..611 -
1683187117.8599813-UTR-P-wetherbeei_contig9939:830..9881683187117.8599813-UTR-P-wetherbeei_contig9939:830..988Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9939 831..988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9939.1.1prot_P-wetherbeei_contig9939.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9939 140..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9939.1.1

>prot_P-wetherbeei_contig9939.1.1 ID=prot_P-wetherbeei_contig9939.1.1|Name=mRNA_P-wetherbeei_contig9939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MMPRSPGWRCVFRQPVDNGYVEAIKQIASLLRNGARALARYNRNHGFFIA
FPFHAFPSATPIASQAIAATGCLRTPRPLATGELPLGGSFLLMGFEPFIP
FGQSIPTVIAELAEGLAKMHL
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mRNA from alignment at P-wetherbeei_contig9939:140..988-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9939.1.1 ID=mRNA_P-wetherbeei_contig9939.1.1|Name=mRNA_P-wetherbeei_contig9939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=849bp|location=Sequence derived from alignment at P-wetherbeei_contig9939:140..988- (Phaeothamnion wetherbeei SAG_119_79)
TACCGTGCGCAGTGGCGTGGTTGGGCGGATCGTTGAGAACACCGCTGTCC
CATCACTCAAAACCTTTGTCGATGACCGCAACCAACGACGTACCGACGGG
CCTCCGCGACGTCATCGTCGAGACGCTCAATGGACTGGGCTGCGGCGACG
TCACAAGGGTGCGTGTTTAAAAAAGAATGTTGTGGAAAACTTGCACTTGG
AGGAGTGAGGAAAGAACGGGAGGTCTTCCTCTGTTGCTGCAATGAATGTT
AGTTAATCACGTCTCTGCAGGGCTGCGAAGCTCTTCTGTCCGCTATGTAG
CCACCACAACAGTCACAGCATTGCGAGGCTTGTCTTTGCATTTTTTTTCC
ATCTGTCACCATTGGGTACTGTTGCAGGTCCGTGAGGTGACGCCGGGGCC
GGGCCTGCATAACCGCCACTTCCGTTACGACACCACGGAAAGCAGCTACC
TCGCAAAACTGTCGCGGCGCGGCAGCATCGCGGACTATGATGCCGAGATC
GCCGGGCTGGAGGTGCGTTTTTCGTCAGCCGGTGGATAACGGTTACGTTG
AAGCTATCAAACAAATAGCAAGTCTGCTTCGTAACGGTGCGCGTGCACTT
GCTCGCTACAACCGCAATCACGGCTTTTTCATTGCATTCCCATTCCATGC
CTTTCCTTCTGCAACGCCGATTGCAAGCCAGGCCATCGCTGCGACGGGCT
GCCTCCGTACCCCGCGGCCGCTGGCGACCGGCGAACTGCCGCTCGGCGGC
TCGTTCCTGCTGATGGGGTTCGAGCCTTTTATCCCCTTCGGCCAAAGCAT
CCCCACAGTCATTGCAGAGTTGGCCGAAGGACTGGCCAAGATGCACTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9939:140..988-

>mRNA_P-wetherbeei_contig9939.1.1 ID=mRNA_P-wetherbeei_contig9939.1.1|Name=mRNA_P-wetherbeei_contig9939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig9939:140..988- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCCGAGATCGCCGGGCTGGAGGTGCGTTTTTCGTCAGCCGGTGGA
TAACGGTTACGTTGAAGCTATCAAACAAATAGCAAGTCTGCTTCGTAACG
GTGCGCGTGCACTTGCTCGCTACAACCGCAATCACGGCTTTTTCATTGCA
TTCCCATTCCATGCCTTTCCTTCTGCAACGCCGATTGCAAGCCAGGCCAT
CGCTGCGACGGGCTGCCTCCGTACCCCGCGGCCGCTGGCGACCGGCGAAC
TGCCGCTCGGCGGCTCGTTCCTGCTGATGGGGTTCGAGCCTTTTATCCCC
TTCGGCCAAAGCATCCCCACAGTCATTGCAGAGTTGGCCGAAGGACTGGC
CAAGATGCACTTG
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