mRNA_P-wetherbeei_contig9937.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9937.1.1
Unique NamemRNA_P-wetherbeei_contig9937.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9937.1.1 vs. uniprot
Match: A0A0M9YNM0_9ACTN (Endonuclease VII n=1 Tax=Streptomyces sp. WM4235 TaxID=1415551 RepID=A0A0M9YNM0_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 3.500e-5
Identity = 30/90 (33.33%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:   43 VEKLCKSCDTNKPTSAFNKDKTHSDGLRSSCKSCAK---KALANPNRRRIVH-VARPPGQKRCPKCRNNKPHEAFSPDITSKDGFHAHCK 300
            + K C  C  ++P S +  +++ +DGL+S  +SC+    KA      R +   V  P G KRCP+CR  KPH  +  + T+ DG+ ++C+
Sbjct:    4 ITKRCSRCKQDRPRSEYASNRSIADGLQSYGRSCSADYYKARQEAKGRTVREKVTVPSGHKRCPQCREVKPHSEWERNKTTSDGWSSYCR 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9937.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0M9YNM0_9ACTN3.500e-533.33Endonuclease VII n=1 Tax=Streptomyces sp. WM4235 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9937contigP-wetherbeei_contig9937:1835..2350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog100226.SCO1645
PFAMsEndonuclease_7
Model size516
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.97e-09
EggNOG OGs2EFG7@1|root,3398W@2|Bacteria,2ID0P@201174|Actinobacteria
DescriptionRecombination endonuclease VII
Cds size516
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.7342267-CDS-P-wetherbeei_contig9937:1834..23501683187117.7342267-CDS-P-wetherbeei_contig9937:1834..2350Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9937 1835..2350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9937.1.1prot_P-wetherbeei_contig9937.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9937 1835..2350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9937.1.1

>prot_P-wetherbeei_contig9937.1.1 ID=prot_P-wetherbeei_contig9937.1.1|Name=mRNA_P-wetherbeei_contig9937.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
MEQRTSDPDESESLVEKLCKSCDTNKPTSAFNKDKTHSDGLRSSCKSCAK
KALANPNRRRIVHVARPPGQKRCPKCRNNKPHEAFSPDITSKDGFHAHCK
DCVTKTELRGDRPPRTWRRQVIGATSKLCSRCGEDKPMDQYFVDKSHADG
YGSQCKPCKYEYLNTYNATKRA
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mRNA from alignment at P-wetherbeei_contig9937:1835..2350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9937.1.1 ID=mRNA_P-wetherbeei_contig9937.1.1|Name=mRNA_P-wetherbeei_contig9937.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig9937:1835..2350+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACAGCGGACAAGTGACCCAGATGAGTCTGAATCACTTGTGGAAAA
ATTGTGCAAGAGCTGCGACACAAACAAGCCAACAAGCGCTTTTAACAAGG
ACAAGACGCACTCTGATGGTCTGCGGTCATCTTGTAAATCTTGTGCCAAG
AAGGCCCTCGCAAATCCAAATCGTCGCCGTATAGTGCATGTAGCTCGTCC
TCCGGGACAGAAGAGGTGCCCCAAATGTAGAAACAATAAACCACATGAAG
CATTCAGTCCTGACATTACTTCTAAGGATGGGTTTCATGCCCACTGCAAG
GACTGTGTCACTAAGACTGAGCTGCGCGGTGATCGTCCTCCACGGACGTG
GCGCCGTCAAGTCATTGGAGCAACATCAAAACTATGTTCAAGATGTGGTG
AAGACAAGCCAATGGATCAATACTTTGTTGACAAGTCACACGCAGATGGC
TACGGATCTCAATGCAAACCTTGCAAGTATGAATATCTAAACACCTACAA
CGCAACAAAACGAGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9937:1835..2350+

>mRNA_P-wetherbeei_contig9937.1.1 ID=mRNA_P-wetherbeei_contig9937.1.1|Name=mRNA_P-wetherbeei_contig9937.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig9937:1835..2350+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACAGCGGACAAGTGACCCAGATGAGTCTGAATCACTTGTGGAAAA
ATTGTGCAAGAGCTGCGACACAAACAAGCCAACAAGCGCTTTTAACAAGG
ACAAGACGCACTCTGATGGTCTGCGGTCATCTTGTAAATCTTGTGCCAAG
AAGGCCCTCGCAAATCCAAATCGTCGCCGTATAGTGCATGTAGCTCGTCC
TCCGGGACAGAAGAGGTGCCCCAAATGTAGAAACAATAAACCACATGAAG
CATTCAGTCCTGACATTACTTCTAAGGATGGGTTTCATGCCCACTGCAAG
GACTGTGTCACTAAGACTGAGCTGCGCGGTGATCGTCCTCCACGGACGTG
GCGCCGTCAAGTCATTGGAGCAACATCAAAACTATGTTCAAGATGTGGTG
AAGACAAGCCAATGGATCAATACTTTGTTGACAAGTCACACGCAGATGGC
TACGGATCTCAATGCAAACCTTGCAAGTATGAATATCTAAACACCTACAA
CGCAACAAAACGAGCT
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