mRNA_P-wetherbeei_contig993.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: K0T4V9_THAOC (Sm domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T4V9_THAOC) HSP 1 Score: 120 bits (302), Expect = 7.810e-34 Identity = 63/92 (68.48%), Postives = 70/92 (76.09%), Query Frame = 1 Query: 1 KRSPSDFLKSCLGRPVVVKLNSGVDYRG-VDGFRCLARLASRHC-------VLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTSL 252 KRSPSDFLK+ LGR VVV+LNSG DY+G G A + S++ VLACLDGYMNIAMEQ EEYVDGQLK+KYGDCFIRGNNGT L Sbjct: 10 KRSPSDFLKAVLGRSVVVRLNSGTDYKGGKTGEARAASIDSKYSASPLLLGVLACLDGYMNIAMEQTEEYVDGQLKSKYGDCFIRGNNGTCL 101
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7S2UQ42_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ42_9STRA) HSP 1 Score: 118 bits (296), Expect = 6.040e-33 Identity = 60/80 (75.00%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 240 KRSPSDFLKS LGRPV V+LNSG DYRGV LACLDGYMNIAMEQ EEYVDGQLKAKYGDCFIRGNN Sbjct: 28 KRSPSDFLKSVLGRPVSVRLNSGTDYRGV---------------LACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNN 92
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A8J9X496_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X496_PHATR) HSP 1 Score: 116 bits (290), Expect = 1.780e-32 Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 1 Query: 1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 240 KRSPSDFLKS LGRPV VKLNSG++YRG+ LACLDGY+NIAMEQ EEYVDGQL+AKYGDCFIRGNN Sbjct: 2 KRSPSDFLKSVLGRPVQVKLNSGIEYRGI---------------LACLDGYLNIAMEQTEEYVDGQLQAKYGDCFIRGNN 66
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7S0KWV0_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KWV0_9STRA) HSP 1 Score: 117 bits (292), Expect = 5.120e-32 Identity = 59/80 (73.75%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 240 KRSPSDFLKS LGRPV V+LNSG +YRGV LACLDGYMNIAMEQ EEYVDGQLKAKYGDCFIRGNN Sbjct: 53 KRSPSDFLKSVLGRPVKVRLNSGTEYRGV---------------LACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNN 117
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7S0FIP0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIP0_9STRA) HSP 1 Score: 115 bits (289), Expect = 7.250e-32 Identity = 58/80 (72.50%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 240 KRSPSDFLK+ LGRPV V+LNSG DY+GV LACLDGYMNIAMEQ EEYVDGQLKAKYGDCFIRGNN Sbjct: 30 KRSPSDFLKAVLGRPVNVRLNSGTDYKGV---------------LACLDGYMNIAMEQTEEYVDGQLKAKYGDCFIRGNN 94
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7K7SXJ6_9TYRA (LSM6 protein (Fragment) n=1 Tax=Sapayoa aenigma TaxID=239371 RepID=A0A7K7SXJ6_9TYRA) HSP 1 Score: 115 bits (287), Expect = 8.180e-32 Identity = 58/85 (68.24%), Postives = 63/85 (74.12%), Query Frame = 1 Query: 1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTSLL 255 K++PSDFLK +GRPVVVKLNSGVDYRGV LACLDGYMNIA+EQ EEYV+GQLK KYGD FIRGNNG LL Sbjct: 5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGV---------------LACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNGKFLL 74
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A2I0AH25_9ASPA (Putative small nuclear ribonucleoprotein F n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AH25_9ASPA) HSP 1 Score: 115 bits (289), Expect = 8.390e-32 Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 1 Query: 4 RSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTS 249 ++P+DFLKS GRPVVVKLNSGVDYRG L+ C+LACLDGYMNIAMEQ EEYV+GQLK KYGD FIRGNNG S Sbjct: 17 KTPADFLKSIRGRPVVVKLNSGVDYRGP-----LSAPFLGFCILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNGRS 93
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: B8C1P5_THAPS (Sm domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1P5_THAPS) HSP 1 Score: 114 bits (286), Expect = 9.270e-32 Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 240 KRSPSDFLK+ LGRPV V+LN+G DYRGV LACLDGYMNIAMEQ EEYVDGQLK+KYGDCFIRGNN Sbjct: 2 KRSPSDFLKAVLGRPVNVRLNTGTDYRGV---------------LACLDGYMNIAMEQTEEYVDGQLKSKYGDCFIRGNN 66
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: G1KCF6_ANOCA (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated n=1 Tax=Anolis carolinensis TaxID=28377 RepID=G1KCF6_ANOCA) HSP 1 Score: 115 bits (288), Expect = 1.060e-31 Identity = 58/85 (68.24%), Postives = 63/85 (74.12%), Query Frame = 1 Query: 1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNNGTSLL 255 K++PSDFLK +GRPVVVKLNSGVDYRGV LACLDGYMNIA+EQ EEYV+GQLK KYGD FIRGNNGT L Sbjct: 5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGV---------------LACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNGTYTL 74
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Match: A0A7S2IZG2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IZG2_9EUKA) HSP 1 Score: 115 bits (287), Expect = 1.550e-31 Identity = 59/80 (73.75%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 1 KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGYMNIAMEQAEEYVDGQLKAKYGDCFIRGNN 240 K +PSDFLK+ LGRPVVVKLNSGVDYRGV LACLDGYMNIAMEQ EEYVDGQLKAKYGD FIRGNN Sbjct: 30 KSNPSDFLKTVLGRPVVVKLNSGVDYRGV---------------LACLDGYMNIAMEQTEEYVDGQLKAKYGDTFIRGNN 94 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig993.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig993.2.2 >prot_P-wetherbeei_contig993.2.2 ID=prot_P-wetherbeei_contig993.2.2|Name=mRNA_P-wetherbeei_contig993.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp KRSPSDFLKSCLGRPVVVKLNSGVDYRGVDGFRCLARLASRHCVLACLDGback to top mRNA from alignment at P-wetherbeei_contig993:2807..3174+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig993.2.2 ID=mRNA_P-wetherbeei_contig993.2.2|Name=mRNA_P-wetherbeei_contig993.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=368bp|location=Sequence derived from alignment at P-wetherbeei_contig993:2807..3174+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig993:2807..3174+ >mRNA_P-wetherbeei_contig993.2.2 ID=mRNA_P-wetherbeei_contig993.2.2|Name=mRNA_P-wetherbeei_contig993.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig993:2807..3174+ (Phaeothamnion wetherbeei SAG_119_79)back to top |