mRNA_P-wetherbeei_contig9928.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9928.1.1
Unique NamemRNA_P-wetherbeei_contig9928.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9928.1.1 vs. uniprot
Match: T0PYB2_SAPDV (RING-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PYB2_SAPDV)

HSP 1 Score: 94.4 bits (233), Expect = 1.820e-20
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:    1 GKMHGLLMFSVDADMRSSFSMALHRQPVRDAACQPGSDFCATVAFDRRLNVVDTRARTAVLEYELPAPGWSCTWSGTDAFTLFCGLGDGTVRLFDLRST 297
            G  HGLL  S   D+    S+ LH+ PVRD A        AT AFD +L +  T++ T VL+Y LP PGWSCTW  T+ F ++CG  +G + +FD+R T
Sbjct:  218 GAQHGLLQVST-VDVHHRVSIPLHKSPVRDLAFSHDDALVATTAFDAKLLLTSTKSHTCVLKYNLPFPGWSCTWDATNPFLVYCGHHNGQISVFDIRRT 315
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BLAST of mRNA_P-wetherbeei_contig9928.1.1 vs. uniprot
Match: A0A1V9ZS64_9STRA (E3 ubiquitin-protein ligase RFWD3 isoform X1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS64_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.560e-16
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   40 DMRSSFSMALHRQPVRDAACQPGSDFCATVAFDRRLNVVDTRARTAVLEYELPAPGWSCTWSGTDAFTLFCGLGDGTVRLFDLRST 297
            D+    ++ LH+ PVRD +        AT AFD +L+   T++ ++VL Y+LP PGWSCTW  ++ + +FCG  +G + +FD+R T
Sbjct:  211 DVHHRVAVPLHKSPVRDLSISHDDALVATTAFDAKLHFTSTKSHSSVLRYDLPFPGWSCTWDVSNPYRVFCGHHNGQISVFDIRRT 296
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BLAST of mRNA_P-wetherbeei_contig9928.1.1 vs. uniprot
Match: A0A6A3VVD2_9STRA (RING-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VVD2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.130e-13
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:   10 HGLLMFSVDADMRSSFSMALHRQPVRDAACQPGSDFCATVAFDRRLNVVDTRARTAVLEYELPA---PGWSCTWSGTDAFTLFCGLGDGTVRLFDLR 291
            HG+L+  V  D R    + +H   VRD A  P      TVAFD +L V   R + AV++ ELP     GWSC++S +D + +FCG  DGTV  +D+R
Sbjct:  394 HGVLLL-VAQDPRRRIQVPVHTSDVRDLAIHPTGRSVLTVAFDGKLAVTSIRDQKAVVQVELPPGRRQGWSCSFSESDPYAMFCGFQDGTVAKYDMR 489
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BLAST of mRNA_P-wetherbeei_contig9928.1.1 vs. uniprot
Match: A0A433PVQ6_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PVQ6_9FUNG)

HSP 1 Score: 74.7 bits (182), Expect = 1.440e-13
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:   13 GLLMFSVDADMRSSFSMALHRQPVRDAACQP-GSDFCATVAFDRRLNVVDTRARTAVLE-YELPAPGWSCTWSGTDAFTLFCGLGDGTVRLFDLRST 297
            GLL  S+  +  S   + +H + VRD  C P GS    T + D+ L +  T    ++++ +EL +PGWSC+W   D   +FCGL +GTV +FD+RST
Sbjct:  154 GLLKISL-RETSSQEYVPVHCKSVRDVQCSPTGSGLILTTSLDKTLKLTSTVGSNSIVQSFELDSPGWSCSWKDDDTNYMFCGLANGTVLMFDIRST 249
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BLAST of mRNA_P-wetherbeei_contig9928.1.1 vs. uniprot
Match: A0A8K1FG87_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FG87_PYTOL)

HSP 1 Score: 74.3 bits (181), Expect = 2.100e-13
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:   10 HGLLMFSVDADMRSSFSMALHRQPVRDAACQPGSDFCATVAFDRRLNVVDTRARTAVLEYELPAP---GWSCTWSGTDAFTLFCGLGDGTVRLFDLR 291
            +G++  S  AD R +  +  H+ PVRD       +F  +VAFD +L V + R+ +  L+Y LP     GWSC++S +D F ++CG  DGTV  +D+R
Sbjct:  356 YGIVKLST-ADSRHAVRIPAHQSPVRDLRLSVNEEFALSVAFDGKLVVTNLRSDSVALQYALPQTKRQGWSCSFSKSDPFAMYCGFFDGTVCKYDMR 451
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BLAST of mRNA_P-wetherbeei_contig9928.1.1 vs. uniprot
Match: A0A329SP13_9STRA (RING-type domain-containing protein n=2 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SP13_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.650e-11
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 1 
Query:   10 HGLLMFSVDADMRSSFSMALHRQPVRDAACQPGSDFCATVAFDRRLNVVDTRARTAVLEYELPA---PGWSCTWSGTDAFTLFCGLGDGTVRLFDLR 291
            HG+LM S   D      + +H   VRD +  P   F  TVAFD +L +   + +   L+  LP     GWSCT+S +D + ++CG  DG+V  +D R
Sbjct:  364 HGILMLS-SQDPTLGIRLPVHSSDVRDISIHPSEKFVLTVAFDGKLAMTSLQDKKVALQIVLPPGRRQGWSCTFSESDPYAMYCGFQDGSVAKYDYR 459
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BLAST of mRNA_P-wetherbeei_contig9928.1.1 vs. uniprot
Match: A0A0P1B1N0_PLAHL (RING-finger-containing E3 ubiquitin ligase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1N0_PLAHL)

HSP 1 Score: 66.6 bits (161), Expect = 1.060e-10
Identity = 35/97 (36.08%), Postives = 50/97 (51.55%), Query Frame = 1 
Query:   10 HGLLMFSVDADMRSSFSMALHRQPVRDAACQPGSDFCATVAFDRRLNVVDTRARTAVLEYELP---APGWSCTWSGTDAFTLFCGLGDGTVRLFDLR 291
            HGLL+ S     R    +A+H   VRD        F  TVAFD ++ +     +  VL+  LP     GWSCT+S +D + ++CG  DG+V  +D R
Sbjct:  337 HGLLILSCQNPARGE-RLAVHNSEVRDICIHSSEAFALTVAFDGKMAMTCLNDQKVVLQIMLPNGRRQGWSCTFSASDPYAMYCGFQDGSVAKYDYR 432
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BLAST of mRNA_P-wetherbeei_contig9928.1.1 vs. uniprot
Match: W2LLF1_PHYPR (RING-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2LLF1_PHYPR)

HSP 1 Score: 64.3 bits (155), Expect = 6.920e-10
Identity = 33/97 (34.02%), Postives = 51/97 (52.58%), Query Frame = 1 
Query:   10 HGLLMFSVDADMRSSFSMALHRQPVRDAACQPGSDFCATVAFDRRLNVVDTRARTAVLEYELPA---PGWSCTWSGTDAFTLFCGLGDGTVRLFDLR 291
            +G+LM S   D      + +H   VRD +      F  TVAFD +L +   + +   L+  LP+    GWSCT+S +D + ++CG  DG+V  +D R
Sbjct:  355 YGILMLS-SQDPTLGVRLPVHSSDVRDISIHSSEKFVLTVAFDGKLAMTSLQDKKVALQIVLPSGRRQGWSCTFSDSDPYAMYCGFQDGSVAKYDYR 450
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BLAST of mRNA_P-wetherbeei_contig9928.1.1 vs. uniprot
Match: UPI001FB1018B (E3 ubiquitin-protein ligase RFWD3-like isoform X1 n=3 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB1018B)

HSP 1 Score: 59.3 bits (142), Expect = 3.950e-8
Identity = 24/89 (26.97%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:   31 VDADMRSSFSMALHRQPVRDAACQPGSDFCATVAFDRRLNVVDTRARTAVLEYELPAPGWSCTWSGTDAFTLFCGLGDGTVRLFDLRST 297
            VD + +    +  + + ++D    P        +  ++L+V+ T +   VL Y+LPA  WSC+W    +  ++ GL +G + +FD+R T
Sbjct:  315 VDPNAKEDIELLANTKAIKDLHLSPDGKLVLLASLGKKLSVISTDSNNIVLNYDLPAAAWSCSWDVCASQYIYAGLQNGAMLMFDVRQT 403
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BLAST of mRNA_P-wetherbeei_contig9928.1.1 vs. uniprot
Match: K4A7N4_SETIT (RING-type domain-containing protein n=5 Tax=Paniceae TaxID=147428 RepID=K4A7N4_SETIT)

HSP 1 Score: 58.9 bits (141), Expect = 5.360e-8
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:   82 VRDAACQPGSDFCATVA-FDRRLNVVDTRARTAVLEYELPAPGWSCTWSGTDAFTLFCGLGDGTVRLFDLRST 297
            +RD    PG   CA  A   R+L++        VL+Y+LPAPGWSC+   T    L+ GL +G + +FD+R T
Sbjct:  293 IRDICILPGG--CAVFASLGRKLSLFSVATNNVVLQYDLPAPGWSCSGDHTSPTHLYAGLQNGMILVFDIRQT 363
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9928.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T0PYB2_SAPDV1.820e-2044.44RING-type domain-containing protein n=2 Tax=Saprol... [more]
A0A1V9ZS64_9STRA1.560e-1639.53E3 ubiquitin-protein ligase RFWD3 isoform X1 n=1 T... [more]
A0A6A3VVD2_9STRA1.130e-1341.24RING-type domain-containing protein n=9 Tax=Phytop... [more]
A0A433PVQ6_9FUNG1.440e-1339.18WD40-repeat-containing domain protein n=1 Tax=Endo... [more]
A0A8K1FG87_PYTOL2.100e-1338.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A329SP13_9STRA1.650e-1136.08RING-type domain-containing protein n=2 Tax=Phytop... [more]
A0A0P1B1N0_PLAHL1.060e-1036.08RING-finger-containing E3 ubiquitin ligase n=1 Tax... [more]
W2LLF1_PHYPR6.920e-1034.02RING-type domain-containing protein n=11 Tax=Phyto... [more]
UPI001FB1018B3.950e-826.97E3 ubiquitin-protein ligase RFWD3-like isoform X1 ... [more]
K4A7N4_SETIT5.360e-839.73RING-type domain-containing protein n=5 Tax=Panice... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9928contigP-wetherbeei_contig9928:1518..2119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog112098.XP_008620530.1
PFAMszf-RING_2
Model size297
Max annot lvl2759|Eukaryota
KEGG koko:K15691
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000724,GO:0000725,GO:0002039,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010564,GO:0010948,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022402,GO:0031297,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0036211,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045005,GO:0045786,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097371,GO:0140096,GO:1901360,GO:1901564,GO:1901576,GO:1901976,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:1903047,GO:2000001,GO:2000045,GO:2000134,GO:2001020
Exons2
Evalue1.32e-20
EggNOG OGsKOG1645@1|root,KOG1645@2759|Eukaryota
EC2.3.2.27
DescriptionMDM2/MDM4 family protein binding
Cds size291
COG categoryS
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.3720999-CDS-P-wetherbeei_contig9928:1517..15711683187117.3720999-CDS-P-wetherbeei_contig9928:1517..1571Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9928 1518..1571 -
1683187117.3851848-CDS-P-wetherbeei_contig9928:1876..21131683187117.3851848-CDS-P-wetherbeei_contig9928:1876..2113Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9928 1877..2113 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.395788-UTR-P-wetherbeei_contig9928:2113..21191683187117.395788-UTR-P-wetherbeei_contig9928:2113..2119Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9928 2114..2119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9928.1.1prot_P-wetherbeei_contig9928.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9928 1518..2113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9928.1.1

>prot_P-wetherbeei_contig9928.1.1 ID=prot_P-wetherbeei_contig9928.1.1|Name=mRNA_P-wetherbeei_contig9928.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MHGLLMFSVDADMRSSFSMALHRQPVRDAACQPGSDFCATVAFDRRLNVV
DTRARTAVLEYELPAPGWSCTWSGTDAFTLFCGLGDGTVRLFDLRST
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mRNA from alignment at P-wetherbeei_contig9928:1518..2119-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9928.1.1 ID=mRNA_P-wetherbeei_contig9928.1.1|Name=mRNA_P-wetherbeei_contig9928.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=602bp|location=Sequence derived from alignment at P-wetherbeei_contig9928:1518..2119- (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGATGCACGGGTTGCTAATGTTTAGCGTGGACGCAGACATGCGGTC
GTCGTTCAGCATGGCGCTGCACCGTCAGCCGGTGCGGGACGCCGCCTGCC
AGCCCGGCAGCGACTTCTGCGCCACCGTCGCCTTCGACCGGCGGCTTAAC
GTTGTCGACACGCGGGCGCGGACGGCGGTTCTCGAGTACGAACTGCCGGC
GCCCGGGTGGTCGTGCACCTGGAGCGGCACCGACGCCTTTACGGTGAGTG
AGGGGTGGAGTCGCGCAGAAACGGAGGTCGTTTTTCTGTCATTTGTTCCG
ACGTGTGCTCCGCCTCTTTCCTTTCTTCCTTTGCATTCTGGGTGTACGGG
ATCAATATGTGGATTATTGAACCGATCTGTGTTCCCCACGGGTTTATCAG
TTAAAGGAGTCCACGCGCAAGGAGCAAAGGTCGGCCTTCCTTTTCAGCGT
TTCCTTCACTGGCGGCCTTCCTTCTGAGCTTTCCGTTCTGCCGTTCTTCA
TAGCCTTATACCCGTCTTACCCCGATCAACATCTTCTTTGCCGCGCAGCT
CTTTTGCGGGCTTGGCGACGGCACGGTTCGGCTGTTCGACCTCCGTTCCA
CA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9928:1518..2119-

>mRNA_P-wetherbeei_contig9928.1.1 ID=mRNA_P-wetherbeei_contig9928.1.1|Name=mRNA_P-wetherbeei_contig9928.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig9928:1518..2119- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGGGTTGCTAATGTTTAGCGTGGACGCAGACATGCGGTCGTCGTT
CAGCATGGCGCTGCACCGTCAGCCGGTGCGGGACGCCGCCTGCCAGCCCG
GCAGCGACTTCTGCGCCACCGTCGCCTTCGACCGGCGGCTTAACGTTGTC
GACACGCGGGCGCGGACGGCGGTTCTCGAGTACGAACTGCCGGCGCCCGG
GTGGTCGTGCACCTGGAGCGGCACCGACGCCTTTACGCTCTTTTGCGGGC
TTGGCGACGGCACGGTTCGGCTGTTCGACCTCCGTTCCACA
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