mRNA_P-wetherbeei_contig9927.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9927.1.1
Unique NamemRNA_P-wetherbeei_contig9927.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9927.1.1 vs. uniprot
Match: A0A835XXL3_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XXL3_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 1.720e-22
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   37 PKVRARDAILGAFVADSATSGLHWIYDTSKIDDLLKGERALEHPFEFYDPPSCPFYSSTVGNLSPWGHELVPLLTSLKKRGE 282
            P VRAR A+LGAFVAD+ATS LHWIY+  K+ ++L          EF+DPPSCPFYS+TVG LSP+G EL+PL+  L   GE
Sbjct:    7 PVVRARAAVLGAFVADAATSPLHWIYNRQKLREVLTNPTDRTAEPEFFDPPSCPFYSATVGGLSPYGQELLPLVRYLAANGE 88          
BLAST of mRNA_P-wetherbeei_contig9927.1.1 vs. uniprot
Match: A0A150GFD0_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GFD0_GONPE)

HSP 1 Score: 97.1 bits (240), Expect = 2.780e-21
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   46 RARDAILGAFVADSATSGLHWIYDTSKIDDLLKGERALEHPFEFYDPPSCPFYSSTVGNLSPWGHELVPLLTSLKKRG--EPSSCFPTLAA 312
            RAR A+LGAFVAD+ATS LHWIY  +K+ ++LK +       EF+DPPSCPFY++TVG LSP+G EL+PL+  L   G  +P      LAA
Sbjct:    5 RARAAMLGAFVADAATSPLHWIYKAAKLQEVLKKDGDRSEEPEFFDPPSCPFYTTTVGALSPYGQELLPLVKFLASTGGLDPQEWAKYLAA 95          
BLAST of mRNA_P-wetherbeei_contig9927.1.1 vs. uniprot
Match: A0A225UER5_9STRA (ADP-ribosylation/Crystallin J1 n=2 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UER5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.980e-20
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 LTGSAMAAFNVDPKVRARDAILGAFVADSATSGLHWIYDTSKIDDLLKGERALEHPFEFYDPPSCPFYSSTVGNLSPWGHELVPLLTSLKKRGE 282
            LT S+  + ++  K RA  A+ GAFVAD+AT GLHWIYD  K+ +L+    +     EFY+PPSCPFYS   G LSP+G E+ PLL  + +RGE
Sbjct:   36 LTTSSARSMSLTTKQRALAAVTGAFVADAATMGLHWIYDGEKMKELVSARSSGP---EFYEPPSCPFYSYESGALSPYGDEIFPLLQDVAERGE 126          
BLAST of mRNA_P-wetherbeei_contig9927.1.1 vs. uniprot
Match: A0A835VSI2_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VSI2_CHLIN)

HSP 1 Score: 93.2 bits (230), Expect = 6.230e-20
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   34 DPKVRARDAILGAFVADSATSGLHWIYDTSKIDDLL--KGERALEHPFEFYDPPSCPFYSSTVGNLSPWGHELVPLLTSLKKRG--EPSSCFPTLAA 312
            D   RAR A+LGA VAD+AT+ LHWIY+ +K+ ++L   G+R  +   EF+DPPSCPFY++TVG LSP+G EL+PL+  +   G  EP +    LAA
Sbjct:    3 DVGARARAALLGALVADAATAPLHWIYNAAKLKEVLTTNGDRTADP--EFFDPPSCPFYTNTVGALSPYGQELIPLVKFMGNTGGCEPQAWSKYLAA 97          
BLAST of mRNA_P-wetherbeei_contig9927.1.1 vs. uniprot
Match: A0A2K3D8I0_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D8I0_CHLRE)

HSP 1 Score: 93.2 bits (230), Expect = 6.240e-20
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   34 DPKVRARDAILGAFVADSATSGLHWIYDTSKIDDLL--KGERALEHPFEFYDPPSCPFYSSTVGNLSPWGHELVPLLTSLKKRG--EPSSCFPTLAA 312
            D   RAR A+LGA VAD+AT+ LHWIY+ +K+ ++L   G+R  +   EF+DPPSCPFY++TVG LSP+G EL+PL+  +   G  EP +    LAA
Sbjct:    3 DVGARARAALLGALVADAATAPLHWIYNAAKLKEVLTTNGDRTADP--EFFDPPSCPFYTNTVGALSPYGQELIPLVKFMGNTGGCEPQAWSKYLAA 97          
BLAST of mRNA_P-wetherbeei_contig9927.1.1 vs. uniprot
Match: A0A835T9D5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T9D5_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 6.240e-20
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   46 RARDAILGAFVADSATSGLHWIYDTSKIDDLL--KGERALEHPFEFYDPPSCPFYSSTVGNLSPWGHELVPLLTSLKKRG--EPSSCFPTLAA 312
            R R A+LGA VAD+ATS LHWIY+ +K+ ++L   G+R  +   EF+DPPSCPFY++TVG+LSP+G EL+PL+  +   G  EP +    LAA
Sbjct:    7 RVRAALLGALVADAATSPLHWIYNAAKLKEVLTTNGDRTADP--EFFDPPSCPFYTNTVGSLSPYGQELIPLIKFIGDTGGVEPQAWAKYLAA 97          
BLAST of mRNA_P-wetherbeei_contig9927.1.1 vs. uniprot
Match: A0A662WQ14_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQ14_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.650e-20
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   40 KVRARDAILGAFVADSATSGLHWIYDTSKIDDLLKGERALEHPFEFYDPPSCPFYSSTVGNLSPWGHELVPLLTSLKKRGE 282
            K RA  A++G FVAD+AT GLHWIYD  K+ +L+   R    P EF++PPSCPFYS T G LSP+G E+ PLL  + +RGE
Sbjct:   15 KQRAVAAVIGGFVADAATMGLHWIYDGEKLKELV-ASRGAAGP-EFFEPPSCPFYSYTSGALSPYGDEIFPLLKDVAERGE 93          
BLAST of mRNA_P-wetherbeei_contig9927.1.1 vs. uniprot
Match: A8J725_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J725_CHLRE)

HSP 1 Score: 92.4 bits (228), Expect = 1.130e-19
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   34 DPKVRARDAILGAFVADSATSGLHWIYDTSKIDDLL--KGERALEHPFEFYDPPSCPFYSSTVGNLSPWGHELVPLLTSLKKRGEPSSCFP 300
            D   RAR A+LGA VAD+AT+ LHWIY+ +K+ ++L   G+R  +   EF+DPPSCPFY++TVG LSP+G EL+PL+   K  G    C P
Sbjct:    3 DVGARARAALLGALVADAATAPLHWIYNAAKLKEVLTTNGDRTADP--EFFDPPSCPFYTNTVGALSPYGQELIPLV---KFMGNTGGCEP 88          
BLAST of mRNA_P-wetherbeei_contig9927.1.1 vs. uniprot
Match: A0A329RRM2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RRM2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.270e-19
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:   10 SAMAAFNVDPKVRARDAILGAFVADSATSGLHWIYDTSKIDDLLKGERALEHPFEFYDPPSCPFYSSTVGNLSPWGHELVPLLTSLKKRGE 282
            S+ +  ++  K RA  A+ G FVAD+AT GLHWIYD  K+ +L    R+     EFY+PPSCPFYS   G LSP+G E+ PLL  + +RGE
Sbjct:   48 SSPSTMSLSTKQRALAAVAGGFVADAATMGLHWIYDADKMKELAAARRSGGP--EFYEPPSCPFYSYESGALSPYGDEIFPLLQDVAERGE 136          
BLAST of mRNA_P-wetherbeei_contig9927.1.1 vs. uniprot
Match: H3GV26_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GV26_PHYRM)

HSP 1 Score: 89.4 bits (220), Expect = 3.600e-19
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   40 KVRARDAILGAFVADSATSGLHWIYDTSKIDDLLKGERALEHPFEFYDPPSCPFYSSTVGNLSPWGHELVPLLTSLKKRGE 282
            K RA  A+ G FVAD+AT GLHWIYD  K+  L    R+   P EFYDPPSCPFYS   G LSP+G E+ PLL  + +RGE
Sbjct:    6 KQRALAAVAGGFVADAATMGLHWIYDGDKMKQLAAA-RSTAGP-EFYDPPSCPFYSYESGALSPYGDEIFPLLQDVAERGE 84          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9927.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835XXL3_9CHLO1.720e-2258.54Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A150GFD0_GONPE2.780e-2153.85Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A225UER5_9STRA2.980e-2050.00ADP-ribosylation/Crystallin J1 n=2 Tax=Phytophthor... [more]
A0A835VSI2_CHLIN6.230e-2050.52Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A2K3D8I0_CHLRE6.240e-2050.52Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A835T9D5_9CHLO6.240e-2051.61Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A662WQ14_9STRA7.650e-2055.56Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A8J725_CHLRE1.130e-1951.65Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A329RRM2_9STRA3.270e-1949.45Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
H3GV26_PHYRM3.600e-1956.79Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9927contigP-wetherbeei_contig9927:1766..2212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3055.EDP00246
PFAMsADP_ribosyl_GH
Model size312
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.12e-20
EggNOG OGs2CN90@1|root,2QUJI@2759|Eukaryota
DescriptionADP-ribosylglycohydrolase
Cds size297
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.3173928-UTR-P-wetherbeei_contig9927:1765..17801683187117.3173928-UTR-P-wetherbeei_contig9927:1765..1780Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9927 1766..1780 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.3335354-CDS-P-wetherbeei_contig9927:1780..19301683187117.3335354-CDS-P-wetherbeei_contig9927:1780..1930Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9927 1781..1930 +
1683187117.3446403-CDS-P-wetherbeei_contig9927:2065..22121683187117.3446403-CDS-P-wetherbeei_contig9927:2065..2212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9927 2066..2212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9927.1.1prot_P-wetherbeei_contig9927.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9927 1781..2212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9927.1.1

>prot_P-wetherbeei_contig9927.1.1 ID=prot_P-wetherbeei_contig9927.1.1|Name=mRNA_P-wetherbeei_contig9927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MAAFNVDPKVRARDAILGAFVADSATSGLHWIYDTSKIDDLLKGERALEH
PFEFYDPPSCPFYSSTVGNLSPWGHELVPLLTSLKKRGEPSSCFPTLAA
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mRNA from alignment at P-wetherbeei_contig9927:1766..2212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9927.1.1 ID=mRNA_P-wetherbeei_contig9927.1.1|Name=mRNA_P-wetherbeei_contig9927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig9927:1766..2212+ (Phaeothamnion wetherbeei SAG_119_79)
CTAACGGGTTCGGCAATGGCCGCTTTCAATGTGGATCCCAAAGTACGAGC GCGCGACGCCATTCTTGGCGCGTTCGTTGCGGATTCCGCCACATCAGGAC TTCACTGGATTTACGATACGTCGAAGATTGACGACCTCCTCAAAGGCGAG CGAGCCTTGGAGCATGTGTCCGTTTGGAAGCATCCATTTTTTTTCCAGAT AGTGTTCCAATTGTGCTGCCTTTCACTCTTTGGATGGTGCAGATAGTCCC TCAACTTCATCACCACGTCCTGGCCGTTTCACCCCTCGACAGATGGGAAG CCCTTTGAATTCTACGATCCACCTTCCTGCCCGTTCTACTCATCTACCGT CGGCAACCTCTCCCCGTGGGGCCACGAGCTTGTGCCGCTTCTGACGAGCC TCAAAAAGCGAGGCGAGCCGTCTTCCTGCTTTCCCACCCTAGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9927:1766..2212+

>mRNA_P-wetherbeei_contig9927.1.1 ID=mRNA_P-wetherbeei_contig9927.1.1|Name=mRNA_P-wetherbeei_contig9927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig9927:1766..2212+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCTTTCAATGTGGATCCCAAAGTACGAGCGCGCGACGCCATTCT
TGGCGCGTTCGTTGCGGATTCCGCCACATCAGGACTTCACTGGATTTACG
ATACGTCGAAGATTGACGACCTCCTCAAAGGCGAGCGAGCCTTGGAGCAT
CCCTTTGAATTCTACGATCCACCTTCCTGCCCGTTCTACTCATCTACCGT
CGGCAACCTCTCCCCGTGGGGCCACGAGCTTGTGCCGCTTCTGACGAGCC
TCAAAAAGCGAGGCGAGCCGTCTTCCTGCTTTCCCACCCTAGCCGCC
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