mRNA_P-wetherbeei_contig9924.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9924.4.1
Unique NamemRNA_P-wetherbeei_contig9924.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9924.4.1 vs. uniprot
Match: A0A7S1TM31_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TM31_9RHOD)

HSP 1 Score: 148 bits (373), Expect = 3.640e-43
Identity = 72/101 (71.29%), Postives = 79/101 (78.22%), Query Frame = 1
Query:  151 RVVVEYCPGCRWMLRSAWLAQELLSTFETELFEVALRPSRVAGTFEVRVDGKSVWERRRDGGFPEAKVLKQRVRDVVRPGMDLGHSEAAKR*GLGSGLTAA 453
            RV +EYCPGC+WMLR+AWLAQELL TFETEL EVALRPS VAGTF VR     VW+R+ DGGFPEAKVLKQRVRDV+ P M+LGHSEAA     G   T A
Sbjct:    3 RVCIEYCPGCKWMLRAAWLAQELLQTFETELHEVALRPSAVAGTFVVRARDNVVWDRKVDGGFPEAKVLKQRVRDVIAPAMNLGHSEAAAHRSAGDIGTLA 103          
BLAST of mRNA_P-wetherbeei_contig9924.4.1 vs. uniprot
Match: A0A7S0ZF64_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZF64_9RHOD)

HSP 1 Score: 134 bits (337), Expect = 5.520e-37
Identity = 61/113 (53.98%), Postives = 84/113 (74.34%), Query Frame = 1
Query:   88 RCSVALVEEGSNTEATNSQIP-----RVVVEYCPGCRWMLRSAWLAQELLSTFETELFEVALRPSRVAGTFEVRVDGKSVWERRRDGGFPEAKVLKQRVRDVVRPGMDLGHSE 411
            R   A+ ++ +   +  S++P     RV +EYC GC+WMLRSAW+AQELL TFE+EL EVAL PS V+GTF++    + +WER+RDGGFP+ K+LKQRVRDV+ P ++LGHS+
Sbjct:   45 RAVPAMCDKKTEPSSKQSEVPSPRKGRVQIEYCVGCKWMLRSAWIAQELLQTFESELSEVALCPSSVSGTFQIHAQDEIIWERQRDGGFPDIKILKQRVRDVISPTLNLGHSD 157          
BLAST of mRNA_P-wetherbeei_contig9924.4.1 vs. uniprot
Match: A0A2A5GNW0_9GAMM (Uncharacterized protein n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A2A5GNW0_9GAMM)

HSP 1 Score: 130 bits (326), Expect = 3.540e-36
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  139 SQIPRVVVEYCPGCRWMLRSAWLAQELLSTFETELFEVALRPSRVAGTFEVRVDGKSVWERRRDGGFPEAKVLKQRVRDVVRPGMDLGHSE 411
            S  PR+ + YCP C W+LRSAWLAQELL+TF  +L EVAL+P+  +GTFE+R+D +++WER+ DGGFPEAK+LKQRVRD + P   LGHS+
Sbjct:    2 SSKPRITILYCPRCNWLLRSAWLAQELLTTFXDDLDEVALKPAEQSGTFEIRLDHQTIWERKSDGGFPEAKILKQRVRDCIDPDRSLGHSD 92          
BLAST of mRNA_P-wetherbeei_contig9924.4.1 vs. uniprot
Match: UPI000C1A6B3B (SelT/SelW/SelH family protein n=1 Tax=Pararhizobium haloflavum TaxID=2037914 RepID=UPI000C1A6B3B)

HSP 1 Score: 129 bits (324), Expect = 6.900e-36
Identity = 61/88 (69.32%), Postives = 69/88 (78.41%), Query Frame = 1
Query:  148 PRVVVEYCPGCRWMLRSAWLAQELLSTFETELFEVALRPSRVAGTFEVRVDGKSVWERRRDGGFPEAKVLKQRVRDVVRPGMDLGHSE 411
            PR+ +EYC  C WMLR+AWLAQELLSTF  +L EVAL+P    G FE+RV    VWER+RDGGFPEAKVLKQRVRD V PG DLGHS+
Sbjct:    4 PRITIEYCTQCNWMLRAAWLAQELLSTFGQDLAEVALKPG-TGGVFEIRVTDTLVWERKRDGGFPEAKVLKQRVRDCVWPGRDLGHSD 90          
BLAST of mRNA_P-wetherbeei_contig9924.4.1 vs. uniprot
Match: N2JJA9_9PSED (SelT/selW/selH selenoprotein domain-containing protein n=7 Tax=Pseudomonas TaxID=286 RepID=N2JJA9_9PSED)

HSP 1 Score: 128 bits (321), Expect = 2.730e-35
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = 1
Query:  142 QIPRVVVEYCPGCRWMLRSAWLAQELLSTFETELFEVALRPSRVAGTFEVRVDGKSVWERRRDGGFPEAKVLKQRVRDVVRPGMDLGHSE 411
            Q P VV+ YC  C+W+LR+AW+AQELLSTF TEL  V+L PS   GTF++  DG  +WER+RDGGFPEAKVLKQRVRD++ P  DLGHS+
Sbjct:    4 QKPEVVITYCTQCQWLLRAAWMAQELLSTFTTELGRVSLEPS-TGGTFQITCDGALIWERKRDGGFPEAKVLKQRVRDLINPNKDLGHSD 92          
BLAST of mRNA_P-wetherbeei_contig9924.4.1 vs. uniprot
Match: A0A344UP36_9NEIS (Selenoprotein W-related protein n=6 Tax=Chromobacterium group TaxID=90153 RepID=A0A344UP36_9NEIS)

HSP 1 Score: 127 bits (319), Expect = 4.870e-35
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 1
Query:  133 TNSQIPRVVVEYCPGCRWMLRSAWLAQELLSTFETELFEVALRPSRVAGTFEVRVDGKSVWERRRDGGFPEAKVLKQRVRDVVRPGMDLGHSE 411
            T++ +PRVV+ YC GCRW+LR+ WLAQELL+TFE EL EVALRP    G F V VDG+ +W+R+RD GFPE KVLKQR+RD + P   LGHS+
Sbjct:    6 TSAALPRVVIHYCTGCRWLLRAGWLAQELLTTFEKELSEVALRPGS-GGVFRVEVDGEPLWDRKRDDGFPELKVLKQRLRDRIAPDKPLGHSD 97          
BLAST of mRNA_P-wetherbeei_contig9924.4.1 vs. uniprot
Match: K2N3Q8_9HYPH (Putative selenoprotein n=1 Tax=Nitratireductor pacificus pht-3B TaxID=391937 RepID=K2N3Q8_9HYPH)

HSP 1 Score: 127 bits (319), Expect = 4.870e-35
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 1
Query:  151 RVVVEYCPGCRWMLRSAWLAQELLSTFETELFEVALRPSRVAGTFEVRVDGKSVWERRRDGGFPEAKVLKQRVRDVVRPGMDLGHSEAA 417
            RV + YC  C+W+LRSAWLAQELLSTF TEL EV+LRP    G FE+  +G  +WER+RDGGFPEAKVLKQRVRD++ P  DLGHS+ A
Sbjct:    5 RVAITYCTQCQWLLRSAWLAQELLSTFSTELAEVSLRPG-TGGIFEITCNGTLIWERKRDGGFPEAKVLKQRVRDIIDPERDLGHSDRA 92          
BLAST of mRNA_P-wetherbeei_contig9924.4.1 vs. uniprot
Match: A0A1H0RL77_9HYPH (Selenoprotein W-related protein n=2 Tax=Phyllobacterium TaxID=28100 RepID=A0A1H0RL77_9HYPH)

HSP 1 Score: 128 bits (321), Expect = 5.430e-35
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  148 PRVVVEYCPGCRWMLRSAWLAQELLSTFETELFEVALRPSRVAGTFEVRVDGKSVWERRRDGGFPEAKVLKQRVRDVVRPGMDLGHSEAAKR 423
            PR+ + YC  C W+LRSAW+AQELLSTF  +L EVAL P    G F+++VDG+S+WER+RDGGFPEAKVLKQRVRD+V P  DLGHS+   R
Sbjct:    5 PRITIRYCTQCNWLLRSAWMAQELLSTFGADLGEVALVPG-TGGIFKIQVDGESIWERKRDGGFPEAKVLKQRVRDIVWPERDLGHSDKHHR 95          
BLAST of mRNA_P-wetherbeei_contig9924.4.1 vs. uniprot
Match: A0A0F3KFI1_9NEIS (Uncharacterized protein n=6 Tax=Aquitalea TaxID=407217 RepID=A0A0F3KFI1_9NEIS)

HSP 1 Score: 127 bits (318), Expect = 7.540e-35
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 1
Query:  124 TEATNSQIPRVVVEYCPGCRWMLRSAWLAQELLSTFETELFEVALRPSRVAGTFEVRVDGKSVWERRRDGGFPEAKVLKQRVRDVVRPGMDLGHSEAA 417
            T  + S +PR+ +EYC GCRWMLR+AW+AQELL+TFE EL EVALRP    G F V VDG+ +W+R++DGGFP+ K LKQ VRD V P   LGHSE A
Sbjct:    4 TTHSPSALPRISIEYCTGCRWMLRAAWMAQELLTTFEKELAEVALRPGS-GGVFRVCVDGEQIWDRKQDGGFPDIKQLKQLVRDRVAPDKSLGHSERA 100          
BLAST of mRNA_P-wetherbeei_contig9924.4.1 vs. uniprot
Match: UPI000C9DD61D (SelT/SelW/SelH family protein n=1 Tax=Mangrovicella endophytica TaxID=2066697 RepID=UPI000C9DD61D)

HSP 1 Score: 126 bits (317), Expect = 9.210e-35
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  148 PRVVVEYCPGCRWMLRSAWLAQELLSTFETELFEVALRPSRVAGTFEVRVDGKSVWERRRDGGFPEAKVLKQRVRDVVRPGMDLGHSE 411
            PR+ + YC  C+W+LR+AW+AQELLSTF T+L EVAL+P    G FE+  DG+++WER+ DGGFPEAKVLKQRVRD + PG DLGHS+
Sbjct:    9 PRIAITYCTQCQWLLRAAWMAQELLSTFSTDLGEVALQPG-TGGAFEITYDGETIWERKADGGFPEAKVLKQRVRDRLDPGRDLGHSD 95          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9924.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1TM31_9RHOD3.640e-4371.29Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A7S0ZF64_9RHOD5.520e-3753.98Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A2A5GNW0_9GAMM3.540e-3661.54Uncharacterized protein n=1 Tax=Porticoccaceae bac... [more]
UPI000C1A6B3B6.900e-3669.32SelT/SelW/SelH family protein n=1 Tax=Pararhizobiu... [more]
N2JJA9_9PSED2.730e-3564.44SelT/selW/selH selenoprotein domain-containing pro... [more]
A0A344UP36_9NEIS4.870e-3562.37Selenoprotein W-related protein n=6 Tax=Chromobact... [more]
K2N3Q8_9HYPH4.870e-3566.29Putative selenoprotein n=1 Tax=Nitratireductor pac... [more]
A0A1H0RL77_9HYPH5.430e-3564.13Selenoprotein W-related protein n=2 Tax=Phyllobact... [more]
A0A0F3KFI1_9NEIS7.540e-3561.22Uncharacterized protein n=6 Tax=Aquitalea TaxID=40... [more]
UPI000C9DD61D9.210e-3563.64SelT/SelW/SelH family protein n=1 Tax=Mangrovicell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9924contigP-wetherbeei_contig9924:1534..2058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1415778.JQMM01000001_gene172
PFAMsRdx
Model size525
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K07401
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.46e-37
EggNOG OGsCOG3526@1|root,COG3526@2|Bacteria,1MZ5V@1224|Proteobacteria,1S8S8@1236|Gammaproteobacteria,1JB2G@118884|unclassified Gammaproteobacteria
DescriptionRdx family
Cds size363
COG categoryO
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.197145-UTR-P-wetherbeei_contig9924:1533..16321683187117.197145-UTR-P-wetherbeei_contig9924:1533..1632Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9924 1534..1632 -
1683187117.2152796-UTR-P-wetherbeei_contig9924:1995..20581683187117.2152796-UTR-P-wetherbeei_contig9924:1995..2058Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9924 1996..2058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187117.2066066-CDS-P-wetherbeei_contig9924:1632..19951683187117.2066066-CDS-P-wetherbeei_contig9924:1632..1995Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9924 1633..1995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9924.4.1prot_P-wetherbeei_contig9924.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9924 1633..1995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9924.4.1

>prot_P-wetherbeei_contig9924.4.1 ID=prot_P-wetherbeei_contig9924.4.1|Name=mRNA_P-wetherbeei_contig9924.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MRPTPLSRRCSVALVEEGSNTEATNSQIPRVVVEYCPGCRWMLRSAWLAQ
ELLSTFETELFEVALRPSRVAGTFEVRVDGKSVWERRRDGGFPEAKVLKQ
RVRDVVRPGMDLGHSEAAKR*
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mRNA from alignment at P-wetherbeei_contig9924:1534..2058-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9924.4.1 ID=mRNA_P-wetherbeei_contig9924.4.1|Name=mRNA_P-wetherbeei_contig9924.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig9924:1534..2058- (Phaeothamnion wetherbeei SAG_119_79)
TTGCTGTGTCGAGCGATCGCCTGCCAGGCCGTGGGCGCCTTTCTCTTTGG CGCTTCTCCAGCAATGCGGCCCACACCGCTATCGCGTCGGTGCAGCGTTG CTTTGGTGGAAGAGGGAAGCAACACAGAAGCGACGAACTCGCAGATTCCG CGAGTCGTCGTTGAGTACTGCCCGGGCTGCAGGTGGATGCTGCGAAGCGC CTGGCTGGCACAGGAGCTCCTTAGCACCTTCGAAACGGAGCTGTTCGAGG TGGCCCTTCGCCCTAGCCGCGTCGCCGGAACCTTTGAGGTACGTGTGGAC GGGAAATCGGTTTGGGAGAGGCGGCGGGACGGTGGGTTTCCCGAAGCCAA GGTGTTGAAGCAGCGTGTGCGCGACGTTGTGCGGCCTGGGATGGATCTCG GCCACAGCGAGGCGGCAAAACGCTGAGGGCTCGGTTCGGGCTTGACAGCT GCGTCATAGCCGCCGTTATGAAGCCAAATTCCAGCACCTCACGAACGTCT TTTCCCTGTTTCTGCTTTCCCCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9924:1534..2058-

>mRNA_P-wetherbeei_contig9924.4.1 ID=mRNA_P-wetherbeei_contig9924.4.1|Name=mRNA_P-wetherbeei_contig9924.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig9924:1534..2058- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCCCACACCGCTATCGCGTCGGTGCAGCGTTGCTTTGGTGGAAGA
GGGAAGCAACACAGAAGCGACGAACTCGCAGATTCCGCGAGTCGTCGTTG
AGTACTGCCCGGGCTGCAGGTGGATGCTGCGAAGCGCCTGGCTGGCACAG
GAGCTCCTTAGCACCTTCGAAACGGAGCTGTTCGAGGTGGCCCTTCGCCC
TAGCCGCGTCGCCGGAACCTTTGAGGTACGTGTGGACGGGAAATCGGTTT
GGGAGAGGCGGCGGGACGGTGGGTTTCCCGAAGCCAAGGTGTTGAAGCAG
CGTGTGCGCGACGTTGTGCGGCCTGGGATGGATCTCGGCCACAGCGAGGC
GGCAAAACGCTGA
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