mRNA_P-wetherbeei_contig9919.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9919.2.1
Unique NamemRNA_P-wetherbeei_contig9919.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9919.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9919contigP-wetherbeei_contig9919:1253..1828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size394
Hectar predicted targeting categoryother localisation
Exons2
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187116.8687308-CDS-P-wetherbeei_contig9919:1252..12761683187116.8687308-CDS-P-wetherbeei_contig9919:1252..1276Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9919 1253..1276 -
1683187116.8805711-CDS-P-wetherbeei_contig9919:1459..18281683187116.8805711-CDS-P-wetherbeei_contig9919:1459..1828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9919 1460..1828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9919.2.1prot_P-wetherbeei_contig9919.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9919 1253..1828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9919.2.1

>prot_P-wetherbeei_contig9919.2.1 ID=prot_P-wetherbeei_contig9919.2.1|Name=mRNA_P-wetherbeei_contig9919.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
GDGGRGGSNEVDNHGNSCGSHDAERSDACTSGTDGADGSGDTGCNRFNGI
GGSRSGSCDGSRSGSCGEVRDGRGCSGGREQRGAQNALGEEAIRVLPGAR
GGPLRLPAATEGRAGAGGRRCHPRGQEVRVG
back to top

mRNA from alignment at P-wetherbeei_contig9919:1253..1828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9919.2.1 ID=mRNA_P-wetherbeei_contig9919.2.1|Name=mRNA_P-wetherbeei_contig9919.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig9919:1253..1828- (Phaeothamnion wetherbeei SAG_119_79)
GGCGACGGCGGCCGCGGCGGCAGCAATGAAGTCGACAACCACGGCAACAG
CTGCGGCAGCCACGACGCCGAAAGGAGCGACGCCTGCACCAGCGGCACGG
ACGGTGCTGACGGCAGCGGTGACACCGGCTGCAATCGCTTTAACGGCATC
GGCGGCAGCAGGAGCGGGAGCTGTGACGGCAGCAGGAGCGGGAGCTGTGG
TGAGGTCCGCGATGGTAGAGGCTGCTCCGGCGGGAGAGAGCAGAGAGGTG
CACAAAACGCTCTCGGAGAAGAAGCGATCCGAGTACTTCCAGGAGCGCGT
GGTGGCCCTCTACGATTACCAGCCGCGACAGAAGGCCGAGCTGGAGCTGG
TGGTCGGCGATGTCATCCTGTAAGTGGTGCACTTTGGCACACAGTTACAG
GGGAGAACCGACAGATGAGAAGCACTCTTGTTTTTGCCGTCTTCTGCGTT
ACTGAGGAAGCTGGTGAAGTTTCCCGCACATTTCATCAATTACTCTCCAA
ACTCACTCAACCAGACAACCTTCCAACCACGTTCTGTGCAATACCTTGCC
AGCGTGGCCAAGAAGTACGAGTCGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9919:1253..1828-

>mRNA_P-wetherbeei_contig9919.2.1 ID=mRNA_P-wetherbeei_contig9919.2.1|Name=mRNA_P-wetherbeei_contig9919.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig9919:1253..1828- (Phaeothamnion wetherbeei SAG_119_79)
GGCGACGGCGGCCGCGGCGGCAGCAATGAAGTCGACAACCACGGCAACAG
CTGCGGCAGCCACGACGCCGAAAGGAGCGACGCCTGCACCAGCGGCACGG
ACGGTGCTGACGGCAGCGGTGACACCGGCTGCAATCGCTTTAACGGCATC
GGCGGCAGCAGGAGCGGGAGCTGTGACGGCAGCAGGAGCGGGAGCTGTGG
TGAGGTCCGCGATGGTAGAGGCTGCTCCGGCGGGAGAGAGCAGAGAGGTG
CACAAAACGCTCTCGGAGAAGAAGCGATCCGAGTACTTCCAGGAGCGCGT
GGTGGCCCTCTACGATTACCAGCCGCGACAGAAGGCCGAGCTGGAGCTGG
TGGTCGGCGATGTCATCCTCGTGGCCAAGAAGTACGAGTCGGG
back to top