mRNA_P-wetherbeei_contig9910.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9910.1.1
Unique NamemRNA_P-wetherbeei_contig9910.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig9910.1.1 vs. uniprot
Match: D7G4V9_ECTSI (MORN repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.110e-12
Identity = 128/165 (77.58%), Postives = 140/165 (84.85%), Query Frame = 1 
Query:    4 VYGPPGQAPPLRNVPQSEGNHAYFTYTGQWKNGRMHGFGTYRYTDGTVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYASKNLGVAYDGSWERGGIAGYGTLTMPNGEKV 498
            ++GPPG APP   +  SEG H YF+Y G W+NG M+GFGTYR+ DG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR+ S NL V Y+G W  G I G+GTLTMP+G K+
Sbjct:  120 LFGPPGLAPPQHQILNSEGRHKYFSYDGDWENGNMNGFGTYRFADGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFESANLKVTYEGWWVDGFIRGHGTLTMPDGTKL 284
[Close]
BLAST of mRNA_P-wetherbeei_contig9910.1.1 vs. uniprot
Match: A0A835ZCZ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCZ9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.490e-10
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    4 VYGPPGQAPPLRNVPQSEGNHAYFTYTGQWKNGRMHGFGTYRYTDGTVY 150
             +GPPG APP+ N+P SEG   +F Y G+WK+G+M G+G YR+ DG  Y
Sbjct:  222 TFGPPGLAPPITNIPHSEGQEKFFHYKGEWKDGKMCGYGVYRFADGKTY 270
[Close]
BLAST of mRNA_P-wetherbeei_contig9910.1.1 vs. uniprot
Match: A0A7S2BRN8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BRN8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.610e-9
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 IVYGPPGQAPPLRNVPQSEGNHAYFTYTGQWKNGRMHGFGTYRYTDGTVY 150
            +V GP G AP    +P SEGN  +++Y GQWKNG MHG GTY++ DG+ Y
Sbjct:  128 VVCGPVGTAPAPTLLPNSEGNERFYSYDGQWKNGTMHGRGTYKFQDGSTY 177
[Close]
BLAST of mRNA_P-wetherbeei_contig9910.1.1 vs. uniprot
Match: A0A7S2FV39_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV39_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.080e-7
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    4 VYGPPGQAPPLRNVPQSEGNHAYFTYTGQWKNGRMHGFGTYRYTDG 141
            V GP G A P + +  SE NH +++Y G+WKNG+MHG+GTY++ DG
Sbjct:  294 VRGPVGTAAPPKRILNSEDNHFFYSYDGEWKNGKMHGWGTYKFADG 339
[Close]
BLAST of mRNA_P-wetherbeei_contig9910.1.1 vs. uniprot
Match: A0A7S2RCX9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCX9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.520e-5
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    7 YGPPGQAPPLRNVPQSEGNHAYFTYTGQWKNGRMHGFGTYRYTDGT 144
            + PPG A P R V +S GNH + +Y G+W+ GRMHGFG YR+ DG+
Sbjct:  195 HAPPGLADP-RPVLRSLGNHRWHSYRGEWQEGRMHGFGEYRFADGS 239
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9910.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G4V9_ECTSI5.110e-1277.58MORN repeat-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZCZ9_9STRA4.490e-1053.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BRN8_9STRA1.610e-954.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2FV39_9STRA2.080e-752.17Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RCX9_9STRA1.520e-554.35Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9910contigP-wetherbeei_contig9910:478..1370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G4V9
PFAMsMORN
Model size525
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.38e-13
EggNOG OGsCOG5253@1|root,KOG0229@2759|Eukaryota
Description1-phosphatidylinositol-4-phosphate 5-kinase activity
Cds size525
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187116.4508717-CDS-P-wetherbeei_contig9910:477..6051683187116.4508717-CDS-P-wetherbeei_contig9910:477..605Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9910 478..605 +
1683187116.4623384-CDS-P-wetherbeei_contig9910:698..8121683187116.4623384-CDS-P-wetherbeei_contig9910:698..812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9910 699..812 +
1683187116.4721403-CDS-P-wetherbeei_contig9910:1087..13701683187116.4721403-CDS-P-wetherbeei_contig9910:1087..1370Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9910 1088..1370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9910.1.1prot_P-wetherbeei_contig9910.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9910 478..1370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9910.1.1

>prot_P-wetherbeei_contig9910.1.1 ID=prot_P-wetherbeei_contig9910.1.1|Name=mRNA_P-wetherbeei_contig9910.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
IVYGPPGQAPPLRNVPQSEGNHAYFTYTGQWKNGRMHGFGTYRYTDGTVY
VGHMRDGWPDGPGKATYADGSEYDGEWKAGRHHGQGTFRYASGSIYAGGW
ADGRRHGRGRLTYQSGTTCVGDFVGGAMHGRARYASKNLGVAYDGSWERG
GIAGYGTLTMPNGEKVSLLLLFFS*
back to top

mRNA from alignment at P-wetherbeei_contig9910:478..1370+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9910.1.1 ID=mRNA_P-wetherbeei_contig9910.1.1|Name=mRNA_P-wetherbeei_contig9910.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=893bp|location=Sequence derived from alignment at P-wetherbeei_contig9910:478..1370+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGTGTACGGCCCTCCTGGTCAGGCTCCTCCACTTCGGAATGTCCCACA
GAGCGAGGGAAATCATGCCTACTTTACTTACACTGGCCAGTGGAAAAACG
GGAGGATGCACGGCTTCGGCACGTACAGGTGCGATTCAAAATACTTCCGT
TATTGTGGCTGCTTTCCTCGTCATGCTTCTCAAAAACGTCTGAGAATATA
CTCTCTTTTGCTTGTCTGCAGGTACACTGACGGCACCGTCTACGTGGGTC
ACATGAGAGACGGATGGCCCGACGGTCCCGGGAAGGCTACCTACGCCGAC
GGTTCCGAGTATGACGGGGAGTGGAAGGCCGGAAGGTGCGCGTTAGGCAG
GGCTGAAAAGAAGATTTCTTGTGGCCGAAGCTTTGCTTGACAAGGTTTTG
CGGGGCTCCGCCACTCCCAAGCCTGTCAACACGGCCGCCAAGAAGCCGAA
CAATCCCTTCTTCAACCTTCAAGAAAAAATCGGTGTATCTTGGAGGAACG
AGCCACCTTACAGCAGCAAGCTCCCCTTTTGCGTGCTATTTATCCAATGA
ATTGTTGCTCGGCAGCTGTAATGCATTTCCTTCTTTCAATAAAACCCCAT
GCACTGGCAGGCACCACGGCCAAGGAACTTTCCGGTACGCGAGCGGCAGC
ATATACGCCGGCGGCTGGGCCGACGGCCGGCGGCACGGTAGGGGACGGCT
TACATACCAAAGCGGAACCACCTGCGTCGGAGATTTCGTCGGCGGCGCCA
TGCATGGCCGTGCGCGGTATGCCTCCAAGAATCTTGGTGTGGCCTACGAC
GGGAGCTGGGAGCGCGGCGGTATCGCCGGCTACGGCACGCTGACCATGCC
GAACGGGGAGAAGGTGAGTCTGCTGCTCCTCTTCTTTTCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9910:478..1370+

>mRNA_P-wetherbeei_contig9910.1.1 ID=mRNA_P-wetherbeei_contig9910.1.1|Name=mRNA_P-wetherbeei_contig9910.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig9910:478..1370+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGTGTACGGCCCTCCTGGTCAGGCTCCTCCACTTCGGAATGTCCCACA
GAGCGAGGGAAATCATGCCTACTTTACTTACACTGGCCAGTGGAAAAACG
GGAGGATGCACGGCTTCGGCACGTACAGGTACACTGACGGCACCGTCTAC
GTGGGTCACATGAGAGACGGATGGCCCGACGGTCCCGGGAAGGCTACCTA
CGCCGACGGTTCCGAGTATGACGGGGAGTGGAAGGCCGGAAGGCACCACG
GCCAAGGAACTTTCCGGTACGCGAGCGGCAGCATATACGCCGGCGGCTGG
GCCGACGGCCGGCGGCACGGTAGGGGACGGCTTACATACCAAAGCGGAAC
CACCTGCGTCGGAGATTTCGTCGGCGGCGCCATGCATGGCCGTGCGCGGT
ATGCCTCCAAGAATCTTGGTGTGGCCTACGACGGGAGCTGGGAGCGCGGC
GGTATCGCCGGCTACGGCACGCTGACCATGCCGAACGGGGAGAAGGTGAG
TCTGCTGCTCCTCTTCTTTTCGTGA
back to top