mRNA_P-wetherbeei_contig991.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig991.2.1
Unique NamemRNA_P-wetherbeei_contig991.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig991.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig991contigP-wetherbeei_contig991:2261..2585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size325
Hectar predicted targeting categorysignal peptide
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187116.2302458-CDS-P-wetherbeei_contig991:2260..25841683187116.2302458-CDS-P-wetherbeei_contig991:2260..2584Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig991 2261..2584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig991.2.1prot_P-wetherbeei_contig991.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig991 2261..2584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig991.2.1

>prot_P-wetherbeei_contig991.2.1 ID=prot_P-wetherbeei_contig991.2.1|Name=mRNA_P-wetherbeei_contig991.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
RDANSFWGPHVAFFGAGLAPTIAAPFIARSFRCGIRLYILKTSSWCFERI
AMARISEALKHRAESTDPKDVSGKLPWCLNRFRDERFSFILVLTSSSLGC
GALYAVQA
back to top

mRNA from alignment at P-wetherbeei_contig991:2261..2585+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig991.2.1 ID=mRNA_P-wetherbeei_contig991.2.1|Name=mRNA_P-wetherbeei_contig991.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=325bp|location=Sequence derived from alignment at P-wetherbeei_contig991:2261..2585+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGATGCCAATTCTTTTTGGGGACCGCACGTTGCTTTCTTTGGCGCTGG
TCTTGCTCCGACTATTGCGGCTCCTTTCATCGCTCGCAGCTTCCGTTGCG
GTATTCGCCTCTATATCTTGAAAACATCGTCGTGGTGTTTTGAGAGAATA
GCAATGGCACGAATTTCTGAGGCTCTTAAGCATCGTGCGGAAAGTACCGA
TCCGAAAGACGTTTCCGGGAAGCTTCCTTGGTGCTTGAATCGATTTCGCG
ACGAACGCTTTTCTTTCATTCTTGTTCTGACTTCGTCGTCATTGGGCTGC
GGTGCGCTTTATGCTGTTCAGGCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig991:2261..2585+

>mRNA_P-wetherbeei_contig991.2.1 ID=mRNA_P-wetherbeei_contig991.2.1|Name=mRNA_P-wetherbeei_contig991.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig991:2261..2585+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGATGCCAATTCTTTTTGGGGACCGCACGTTGCTTTCTTTGGCGCTGG
TCTTGCTCCGACTATTGCGGCTCCTTTCATCGCTCGCAGCTTCCGTTGCG
GTATTCGCCTCTATATCTTGAAAACATCGTCGTGGTGTTTTGAGAGAATA
GCAATGGCACGAATTTCTGAGGCTCTTAAGCATCGTGCGGAAAGTACCGA
TCCGAAAGACGTTTCCGGGAAGCTTCCTTGGTGCTTGAATCGATTTCGCG
ACGAACGCTTTTCTTTCATTCTTGTTCTGACTTCGTCGTCATTGGGCTGC
GGTGCGCTTTATGCTGTTCAGGCC
back to top