mRNA_P-wetherbeei_contig9858.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9858.3.1
Unique NamemRNA_P-wetherbeei_contig9858.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9858.3.1 vs. uniprot
Match: D7G994_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G994_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.870e-17
Identity = 71/193 (36.79%), Postives = 90/193 (46.63%), Query Frame = 1 
Query:   22 EDFGLPFIIPG--TLAPYETSYVKERCHAGMNVLCARIHPAHSDLIASGGVDMTVQFSTFAP---------DDARYASSSVR--------LPAPVLSMDFRPTS-----------GGGLLAGCMDGSSHLLSWGRLGNAIAAYGSTGAEDENDDDYGGDGGGSEGEPRIVASFKDHAKYVVCNRWSADGQLFA 510
            +D   PF++PG  T    + S     CH G NVLCAR  P    ++ASGG DM++Q S  A          D    ASSS R        L APVLSMDF P+S            G LLAG MDGSSHL+S         ++G         ++  G          ++AS K+HAKYVV  R+S   + FA
Sbjct:   66 DDPAAPFVVPGDRTACVRQVSDTLVGCHGGTNVLCARACPGLPGIVASGGADMSLQVSRLAQGLGDNEGNADSGGSASSSSRSTELHRLKLAAPVLSMDFCPSSVPFRGGXXXXXXGLLLAGGMDGSSHLVS------IDGSHGGDAXXXXXXEETNG--------VALLASMKNHAKYVVVCRYSTYRRTFA 244
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9858.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G994_ECTSI2.870e-1736.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9858contigP-wetherbeei_contig9858:1877..2386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5786.XP_003292858.1
PFAMsWD40
Model size510
Max annot lvl554915|Amoebozoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.39e-10
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota,3XC4V@554915|Amoebozoa
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_011380.1
DescriptionWD domain, G-beta repeat
Cds size510
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.5537024-CDS-P-wetherbeei_contig9858:1876..23861683187113.5537024-CDS-P-wetherbeei_contig9858:1876..2386Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9858 1877..2386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9858.3.1prot_P-wetherbeei_contig9858.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9858 1877..2386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9858.3.1

>prot_P-wetherbeei_contig9858.3.1 ID=prot_P-wetherbeei_contig9858.3.1|Name=mRNA_P-wetherbeei_contig9858.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
MTDPAEDEDFGLPFIIPGTLAPYETSYVKERCHAGMNVLCARIHPAHSDL
IASGGVDMTVQFSTFAPDDARYASSSVRLPAPVLSMDFRPTSGGGLLAGC
MDGSSHLLSWGRLGNAIAAYGSTGAEDENDDDYGGDGGGSEGEPRIVASF
KDHAKYVVCNRWSADGQLFA
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mRNA from alignment at P-wetherbeei_contig9858:1877..2386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9858.3.1 ID=mRNA_P-wetherbeei_contig9858.3.1|Name=mRNA_P-wetherbeei_contig9858.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig9858:1877..2386+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGACCCCGCGGAGGACGAGGACTTTGGCTTGCCCTTCATAATCCC
GGGCACTCTTGCTCCGTATGAGACGAGCTACGTGAAGGAGCGTTGCCACG
CCGGGATGAACGTCCTGTGCGCCAGAATACACCCGGCGCACTCCGACCTC
ATTGCGAGCGGCGGGGTGGACATGACGGTGCAGTTCTCGACGTTTGCGCC
GGATGACGCCCGTTACGCCTCGAGCTCTGTCCGGCTGCCGGCTCCTGTAC
TCTCGATGGACTTCCGCCCAACGTCCGGCGGCGGCCTCCTGGCGGGCTGC
ATGGACGGCTCTTCCCACCTTTTGTCATGGGGGCGCCTCGGCAACGCAAT
CGCCGCCTACGGTAGTACAGGGGCAGAAGACGAAAATGACGACGACTACG
GCGGCGACGGCGGTGGCAGCGAAGGCGAACCGCGGATCGTGGCGTCCTTC
AAGGACCACGCCAAGTACGTGGTCTGCAACCGCTGGTCGGCCGACGGGCA
GCTCTTCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9858:1877..2386+

>mRNA_P-wetherbeei_contig9858.3.1 ID=mRNA_P-wetherbeei_contig9858.3.1|Name=mRNA_P-wetherbeei_contig9858.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig9858:1877..2386+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGACCCCGCGGAGGACGAGGACTTTGGCTTGCCCTTCATAATCCC
GGGCACTCTTGCTCCGTATGAGACGAGCTACGTGAAGGAGCGTTGCCACG
CCGGGATGAACGTCCTGTGCGCCAGAATACACCCGGCGCACTCCGACCTC
ATTGCGAGCGGCGGGGTGGACATGACGGTGCAGTTCTCGACGTTTGCGCC
GGATGACGCCCGTTACGCCTCGAGCTCTGTCCGGCTGCCGGCTCCTGTAC
TCTCGATGGACTTCCGCCCAACGTCCGGCGGCGGCCTCCTGGCGGGCTGC
ATGGACGGCTCTTCCCACCTTTTGTCATGGGGGCGCCTCGGCAACGCAAT
CGCCGCCTACGGTAGTACAGGGGCAGAAGACGAAAATGACGACGACTACG
GCGGCGACGGCGGTGGCAGCGAAGGCGAACCGCGGATCGTGGCGTCCTTC
AAGGACCACGCCAAGTACGTGGTCTGCAACCGCTGGTCGGCCGACGGGCA
GCTCTTCGCC
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