mRNA_P-wetherbeei_contig9858.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9858.1.1
Unique NamemRNA_P-wetherbeei_contig9858.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9858.1.1 vs. uniprot
Match: A0A1V9ZV51_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV51_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.150e-14
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:   37 LAHSLREAAALVGVGGPTHLILRASPDLLCRNLFCEHVGGPCTCRLAMSLEKVQNVEVLDISDNSLKVLPDVICALQKLR 276
            +A SLR+AA          L+LR S DL+CRNL CE VG  C C+L++ LE++  +E LD+S+N L++LP  I  L KL+
Sbjct:    2 IAKSLRDAA--THTSSVQKLVLRKSQDLVCRNLMCERVGEACVCKLSLVLERLPQLEELDVSENKLQMLPPSIFQLSKLK 79
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BLAST of mRNA_P-wetherbeei_contig9858.1.1 vs. uniprot
Match: A0A225WFI4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WFI4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.370e-13
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:    1 ERKGGFSAMAQRLAHSLREAAALVGVGGPTHLILRASPDLLCRNLFCEHVGGPCTCRLAMSLEKVQNVEVLDISDNSLKVLPDVICALQKLR 276
            +R+    A    LA SLR+ A          L L  S DL+CR L CEHVG  C CRLA++LE+V  +++LD+S N L+ LPD + AL+ L+
Sbjct:   14 QRRNFSDASVSVLATSLRDIAR--SGARVVELELPQSGDLVCRQLMCEHVGDACACRLALALERVPRLQLLDLSANQLRDLPDAVFALKSLK 103
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BLAST of mRNA_P-wetherbeei_contig9858.1.1 vs. uniprot
Match: A0A662XZS3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZS3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.710e-12
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   94 LILRASPDLLCRNLFCEHVGGPCTCRLAMSLEKVQNVEVLDISDNSLKVLPDVICALQKL 273
            L L  SPDL+CRNL CEHVG  C CRL++ LE+V  ++ LD+S+N+L+ LP    +LQ+L
Sbjct:   53 LQLPQSPDLVCRNLMCEHVGDACACRLSLVLERVPQLQRLDLSNNALRALPASTFSLQEL 112
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BLAST of mRNA_P-wetherbeei_contig9858.1.1 vs. uniprot
Match: A0A662YEN8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEN8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.710e-12
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   16 FSAMAQRLAHSLREAAALVGVGGPTHLILRASPDLLCRNLFCEHVGGPCTCRLAMSLEKVQNVEVLDISDNSLKVLPDVICALQK 270
             SA +  +A S R+ A  VG    + L L  SPDL+CRNL CEHVG  C CRL++ LE+V  ++ LD+S N+L+ LP    +LQ+
Sbjct:   29 LSASSTSVARSFRDVAR-VGAA-VSSLQLPQSPDLVCRNLMCEHVGDACACRLSLVLERVPQLQQLDLSSNALRALPASTFSLQE 111
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BLAST of mRNA_P-wetherbeei_contig9858.1.1 vs. uniprot
Match: T0QH27_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QH27_SAPDV)

HSP 1 Score: 69.7 bits (169), Expect = 1.940e-12
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:   37 LAHSLREAAALVGVGGPTHLILRASPDLLCRNLFCEHVGGPCTCRLAMSLEKVQNVEVLDISDNSLKVLPDVICALQKL 273
            +A SLR+AA          L+LR S DLLC NL CE VG  C C+L++ LE++  +E LD+S N+LK LP  I +L+ L
Sbjct:    2 IAKSLRDAA--THTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLKSLPPAIFSLRHL 78
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BLAST of mRNA_P-wetherbeei_contig9858.1.1 vs. uniprot
Match: K3WPL3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPL3_GLOUD)

HSP 1 Score: 67.4 bits (163), Expect = 2.280e-11
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   34 RLAHSLREAAALVGVGGPTH-LILRASPDLLCRNLFCEHVGGPCTCRLAMSLEKVQNVEVLDISDNSLKVLPD 249
            R A SLRE    V  G   H L+L +S DL+C+N+ CEHVG  C C+L++ LE++  ++ +D+S+N L+ LP+
Sbjct:   18 RTARSLRE----VARGHAVHSLLLPSSQDLICKNMMCEHVGSSCACKLSLVLERLPQLQEMDLSNNKLRFLPE 86
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BLAST of mRNA_P-wetherbeei_contig9858.1.1 vs. uniprot
Match: A0A067CF62_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CF62_SAPPC)

HSP 1 Score: 67.4 bits (163), Expect = 1.750e-10
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:   37 LAHSLREAAALVGVGGPTHLILRASPDLLCRNLFCEHVGGPCTCRLAMSLEKVQNVEVLDISDNSLKVLPDVICALQKL 273
            +A SLR+AA          L+LR S DLLC NL CE VG  C C+L++ LE++  +E LD+S N+L  LP  I +L+ L
Sbjct:  383 IAKSLRDAA--THTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLMSLPPAIFSLRHL 459
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9858.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A1V9ZV51_9STRA8.150e-1446.25Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A225WFI4_9STRA4.370e-1343.48Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A662XZS3_9STRA1.710e-1253.33Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662YEN8_9STRA1.710e-1245.88Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
T0QH27_SAPDV1.940e-1246.84Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
K3WPL3_GLOUD2.280e-1143.84Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A067CF62_SAPPC1.750e-1045.57Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9858contigP-wetherbeei_contig9858:844..1367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI42897
PFAMsLRR_8
Model size396
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.08e-14
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota,3QFQS@4776|Peronosporales
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-16_001180.1
DescriptionLeucine rich repeat
Cds size372
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.4877849-CDS-P-wetherbeei_contig9858:843..9471683187113.4877849-CDS-P-wetherbeei_contig9858:843..947Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9858 844..947 -
1683187113.5010908-CDS-P-wetherbeei_contig9858:1075..13431683187113.5010908-CDS-P-wetherbeei_contig9858:1075..1343Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9858 1076..1343 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.5166726-UTR-P-wetherbeei_contig9858:1343..13671683187113.5166726-UTR-P-wetherbeei_contig9858:1343..1367Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9858 1344..1367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9858.1.1prot_P-wetherbeei_contig9858.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9858 844..1343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9858.1.1

>prot_P-wetherbeei_contig9858.1.1 ID=prot_P-wetherbeei_contig9858.1.1|Name=mRNA_P-wetherbeei_contig9858.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MAQRLAHSLREAAALVGVGGPTHLILRASPDLLCRNLFCEHVGGPCTCRL
AMSLEKVQNVEVLDISDNSLKVLPDVICALQKLRHLDLSGNELSTLPRGL
GGLPHLEVLRTAGNPLSAKELSAL
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mRNA from alignment at P-wetherbeei_contig9858:844..1367-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9858.1.1 ID=mRNA_P-wetherbeei_contig9858.1.1|Name=mRNA_P-wetherbeei_contig9858.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=524bp|location=Sequence derived from alignment at P-wetherbeei_contig9858:844..1367- (Phaeothamnion wetherbeei SAG_119_79)
GAGCGAAAGGGAGGCTTCTCTGCGATGGCTCAGCGGCTGGCGCATAGCCT
TCGTGAGGCGGCCGCTCTCGTCGGTGTCGGCGGCCCCACGCACCTCATTC
TTCGAGCGAGCCCCGACCTACTCTGCCGCAACCTGTTTTGCGAGCACGTC
GGAGGGCCATGCACGTGCCGCCTGGCCATGAGCCTGGAGAAGGTGCAGAA
CGTCGAAGTCCTGGACATTTCGGACAACTCCTTAAAGGTTCTTCCAGACG
TCATTTGCGCATTGCAGAAGCTGCGCCACCTTGACCTGAGCGGTAAGAAG
GAAGAGAAAGACTATATCTTTGCCGTTTGTTTATGAACTTGATTTCTCCG
ATAAGCATTTCTCTCCCTGCCACCTCACGTTTCATGAATGTTGTCGCTTC
CTTCACATCGCTTGACGCAGGGAATGAGCTAAGCACACTACCGCGCGGTC
TGGGAGGCCTCCCGCACTTAGAGGTGCTCCGGACGGCTGGCAACCCATTG
TCGGCGAAAGAGCTCTCGGCGCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9858:844..1367-

>mRNA_P-wetherbeei_contig9858.1.1 ID=mRNA_P-wetherbeei_contig9858.1.1|Name=mRNA_P-wetherbeei_contig9858.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig9858:844..1367- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTCAGCGGCTGGCGCATAGCCTTCGTGAGGCGGCCGCTCTCGTCGG
TGTCGGCGGCCCCACGCACCTCATTCTTCGAGCGAGCCCCGACCTACTCT
GCCGCAACCTGTTTTGCGAGCACGTCGGAGGGCCATGCACGTGCCGCCTG
GCCATGAGCCTGGAGAAGGTGCAGAACGTCGAAGTCCTGGACATTTCGGA
CAACTCCTTAAAGGTTCTTCCAGACGTCATTTGCGCATTGCAGAAGCTGC
GCCACCTTGACCTGAGCGGGAATGAGCTAAGCACACTACCGCGCGGTCTG
GGAGGCCTCCCGCACTTAGAGGTGCTCCGGACGGCTGGCAACCCATTGTC
GGCGAAAGAGCTCTCGGCGCTA
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