mRNA_P-wetherbeei_contig9856.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9856.1.1
Unique NamemRNA_P-wetherbeei_contig9856.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9856.1.1 vs. uniprot
Match: A0A6H5KVI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI4_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.290e-33
Identity = 63/140 (45.00%), Postives = 91/140 (65.00%), Query Frame = 1
Query:   22 RDLGCLPFPVGDTLLIGETRHLHLYEARFLALFERAMKTHHGCMAAVTVVEDGNLLSVASICNVIRWRRKQVGVSVTLRCVGRARLVGVSQSLPYLSAVASELVDVPDGDAPYPK------LSAEIHELHRQCRQLEAKI 423
            R++G LPFP+ D +  GET+ LHLYEARFL+LFE A+K H GC+     V+DG L+ V  +C+++ W R++VGVSV LRC+GR  +  V+   PY+ A   E+ DV   D P  +      +S+++  LHRQC +LE K+
Sbjct:   66 REIGLLPFPIDDVMCPGETKALHLYEARFLSLFENAIKNHGGCVGGAIFVDDGVLVRVGQLCDIVAWEREEVGVSVALRCIGRCEIGDVTNVDPYIRANVREVRDVVGMDEPDEEGEDNGVVSSDVFSLHRQCVELEGKM 205          
BLAST of mRNA_P-wetherbeei_contig9856.1.1 vs. uniprot
Match: A0A7S3Y7C9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7C9_HETAK)

HSP 1 Score: 100 bits (249), Expect = 1.580e-22
Identity = 56/139 (40.29%), Postives = 81/139 (58.27%), Query Frame = 1
Query:   25 DLGCLPFPVGDTLLIGETRHLHLYEARFLALFERAMKTHHGCMAAVTVVEDGN---LLSVASICNVIRWRRKQVGVSVTLRCVGRARLVGVSQSLPYLSAVASELVDVPDGDAPYPKLSA---EIHELHRQCRQLEAKI 423
            +LG LPFP+ D + +GE++ LHLYE+RFL LF+ AM           +VE  +    LSVAS+  +  W +  VGV+ T++C GR RL GV+Q+ PYLSA  + L D   G++    + A   E+  LH  CR L  ++
Sbjct:   84 ELGVLPFPIQDLMTLGESKTLHLYESRFLELFQDAMIDREELAVQAIIVEQPSGIGFLSVASLLKIEEWDKLAVGVTATVKCTGRVRLRGVTQAEPYLSADVAYLTDDAPGESQGDAIRALTEEVVGLHASCRGLHLRL 222          
BLAST of mRNA_P-wetherbeei_contig9856.1.1 vs. uniprot
Match: A0A7S3X878_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X878_EMIHU)

HSP 1 Score: 94.4 bits (233), Expect = 2.080e-20
Identity = 57/145 (39.31%), Postives = 81/145 (55.86%), Query Frame = 1
Query:    4 SGESLGRDLGCLPFPVGDTLLIGETRHLHLYEARFLALFERAMKTHHGCMAAVTVVEDGNLLSVASICNVIRWRR--KQVGVSVTLRCVGRARLVGVSQS-LPYLSAVASELVD-VPDGD-APYPKLSAEIHELHRQCRQLEAKI 423
            SG  L  +LG LPFP+   LL GETR +HLYEARF+ LF  A   HH C+ AV     GN+ SV S+  +  +R   +++GV   L+CVGR +L  +  +   YLS       D +P  + A     +AE+ ELH   R++E ++
Sbjct:   47 SGSPL--ELGFLPFPLDQALLPGETRQVHLYEARFITLFSEAASKHHDCLGAVLFTPQGNVASVTSLLEIEEFRTGAEEIGVWANLKCVGRVKLKELETTEFDYLSGGVELFTDSLPTEERAEDDAAAAELRELHASVREMEERL 189          
BLAST of mRNA_P-wetherbeei_contig9856.1.1 vs. uniprot
Match: A0A7S0TK28_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TK28_HEMAN)

HSP 1 Score: 94.0 bits (232), Expect = 3.460e-20
Identity = 54/141 (38.30%), Postives = 76/141 (53.90%), Query Frame = 1
Query:   10 ESLGRDLGCLPFPVGDTLLIGETRHLHLYEARFLALFERAMKTHHGCMAAVTVVEDGNLLSVASICNVIRWRRKQVGVSVTLRCVGRARLVGVSQSLPYLSAVASELVDVP---DGDAPYPKLSAEIHELHRQCRQLEAKI 423
            ++ G  LGCLPFP+ D LL GET+ LHL+EARFL LFE A   + G +  + +V   +LL+V     VI W    VGV V + CVGR ++  V    PY SA+     D P   D    + +  A+  E H  C  + +++
Sbjct:   84 DAEGMTLGCLPFPIQDLLLPGETKSLHLFEARFLKLFEEATGKNKGRLVQL-IVNGQDLLNVGCALEVIDWHPLDVGVKVKVVCVGRVQVTKVVGMAPYPSALVQAYSDTPLDVDQQEEFDQCLAQCFEAHDDCVTISSRL 223          
BLAST of mRNA_P-wetherbeei_contig9856.1.1 vs. uniprot
Match: R1E1S0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E1S0_EMIHU)

HSP 1 Score: 94.0 bits (232), Expect = 1.220e-19
Identity = 54/138 (39.13%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   25 DLGCLPFPVGDTLLIGETRHLHLYEARFLALFERAMKTHHGCMAAVTVVEDGNLLSVASICNVIRWRR--KQVGVSVTLRCVGRARLVGVSQS-LPYLSAVASELVD-VPDGD-APYPKLSAEIHELHRQCRQLEAKI 423
            +LG LPFP+   LL GETR +HLYEARF+ LF  A   HH C+ AV     GN+ SV S+  +  +R   +++GV   L+CVGR +L  +  +   YLS       D +P  + A     +AE+ ELH   R++E ++
Sbjct:  360 ELGFLPFPLDQALLPGETRQVHLYEARFITLFSEAASKHHDCLGAVLFTPQGNVASVTSLLEIEEFRTGAEEIGVWANLKCVGRVKLKELETTEFDYLSGGVELFTDSLPTEERAEDDAAAAELRELHASVREMEERL 497          
BLAST of mRNA_P-wetherbeei_contig9856.1.1 vs. uniprot
Match: A0A7S0LS06_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LS06_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 1.610e-18
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   28 LGCLPFPVGDTLLIGETRHLHLYEARFLALFERAMKTHHGCMAAVTVVEDGNLLSVASICNVIRWRRKQVGVSVTLRCVGRARLVGVSQS 297
            LG LPFP+ + LL GET+ +HLYEARF  LFE A + H GC+  + +   GN+ +V S+  V   RR+++GV   L+CVGR RL  + Q+
Sbjct:   79 LGLLPFPLSEALLPGETKQVHLYEARFTRLFEDAAREHGGCLGQLLLTPAGNVAAVTSLLEVEESRRQEIGVWAQLKCVGRVRLTSLRQT 168          
BLAST of mRNA_P-wetherbeei_contig9856.1.1 vs. uniprot
Match: A0A7S3WM88_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WM88_9SPIT)

HSP 1 Score: 86.3 bits (212), Expect = 2.440e-17
Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   22 RDLGCLPFPVGDTLLIGETRHLHLYEARFLALFERAMKTHHGCMAAVTVVEDGNLLSVASICNVIRWRRKQVGVSVTLRCVGRARLVGVSQS-LPYLSAVASELVDVPDGDAPYPK-----------LSAEIHELHRQCRQLEAKI 423
            R+LG LPF + + LL GET+ +HLYEARFL LF  A +   GC+  + +   GN  +++ +  V   RR+ VGV   L+CV R RLV +  +   +  A+A  + D  +G A   +           L A+I+ ++  C  ++ K+
Sbjct:   56 RELGLLPFSIEEALLPGETKEVHLYEARFLKLFTDATQKQAGCLGQLLITPGGNAAAISPLLVVDESRRRDVGVWARLKCVARVRLVEIQGTDYDFAQAIAELIFDAYEGSAWTQEERCAEGDESIDLEAQIYSVYESCFNMQQKL 201          
BLAST of mRNA_P-wetherbeei_contig9856.1.1 vs. uniprot
Match: A0A7S2BRE0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BRE0_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 3.300e-16
Identity = 37/90 (41.11%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   28 LGCLPFPVGDTLLIGETRHLHLYEARFLALFERAMKTHHGCMAAVTVVEDGNLLSVASICNVIRWRRKQVGVSVTLRCVGRARLVGVSQS 297
            LG LPFPV + LL GET+ +HLYEARF+ LF  A + H  C+  +   + G + ++  +  +  +R+++ GV   L+CVGRARL+ + Q+
Sbjct:   47 LGLLPFPVDEALLPGETKQVHLYEARFIELFANAAEHHGSCVGMLLFGDGGTVDAITPVLMIEEFRKQEFGVWAQLKCVGRARLLELRQT 136          
BLAST of mRNA_P-wetherbeei_contig9856.1.1 vs. uniprot
Match: A0A7S4C4Z2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C4Z2_CHRCT)

HSP 1 Score: 83.6 bits (205), Expect = 4.230e-16
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   19 GRDLGCLPFPVGDTLLIGETRHLHLYEARFLALFERAMKTHHGCMAAVTVVEDGNLLSVASICNVIRWRRKQVGVSVTLRCVGRARLVGVSQS 297
            G+ LG LPF V D +L GET+ +HLYEARF  LFE A + +HGC+  + V  D  + +V S+  V   RR+ +GV   L+CV R RL  + ++
Sbjct:  106 GQKLGLLPFGVADAMLPGETKQVHLYEARFTHLFESATR-NHGCLGQLLVTRDSGVAAVTSLLEVEESRRQDIGVWAQLKCVARVRLTSLEET 197          
BLAST of mRNA_P-wetherbeei_contig9856.1.1 vs. uniprot
Match: A0A7S4J6Y4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J6Y4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.670e-16
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   22 RDLGCLPFPVGDTLLIGETRHLHLYEARFLALFERAMKTHHGCMAAVTVVEDGNLLSVASICNVIRWRRKQ--VGVSVTLRCVGRARLVGVSQSLPYLSAVASELVDVPDGDAPYPKLSA 375
            R++  LPFP  D LL GET+ L LYE RF  LFE AM  H G + A+ ++ D  ++    +C +  + R     G+ +T+R VGRARLV ++Q  PY+ AV  E+ D    D   P + A
Sbjct:  119 REICVLPFPYTDVLLQGETKELRLYEDRFTRLFEDAMDRHGG-VVAMGLLADSGIVQTVPVCEIEAFNRMGDGFGIFLTMRAVGRARLVELTQQEPYIKAVCVEVSDGVPADLELPTVVA 237          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9856.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVI4_9PHAE2.290e-3345.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3Y7C9_HETAK1.580e-2240.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3X878_EMIHU2.080e-2039.31Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S0TK28_HEMAN3.460e-2038.30Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
R1E1S0_EMIHU1.220e-1939.13Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S0LS06_9EUKA1.610e-1846.67Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S3WM88_9SPIT2.440e-1733.56Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S2BRE0_9EUKA3.300e-1641.11Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S4C4Z2_CHRCT4.230e-1644.09Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4J6Y4_9STRA4.670e-1640.00Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9856contigP-wetherbeei_contig9856:507..1074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr43043
Model size423
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.96e-18
EggNOG OGs2CV5B@1|root,2RRBJ@2759|Eukaryota,2XCGV@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-18_000330.1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.364851-CDS-P-wetherbeei_contig9856:506..8591683187113.364851-CDS-P-wetherbeei_contig9856:506..859Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9856 507..859 -
1683187113.3745768-CDS-P-wetherbeei_contig9856:1004..10741683187113.3745768-CDS-P-wetherbeei_contig9856:1004..1074Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9856 1005..1074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9856.1.1prot_P-wetherbeei_contig9856.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9856 507..1074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9856.1.1

>prot_P-wetherbeei_contig9856.1.1 ID=prot_P-wetherbeei_contig9856.1.1|Name=mRNA_P-wetherbeei_contig9856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
MSGESLGRDLGCLPFPVGDTLLIGETRHLHLYEARFLALFERAMKTHHGC
MAAVTVVEDGNLLSVASICNVIRWRRKQVGVSVTLRCVGRARLVGVSQSL
PYLSAVASELVDVPDGDAPYPKLSAEIHELHRQCRQLEAKI
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mRNA from alignment at P-wetherbeei_contig9856:507..1074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9856.1.1 ID=mRNA_P-wetherbeei_contig9856.1.1|Name=mRNA_P-wetherbeei_contig9856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=568bp|location=Sequence derived from alignment at P-wetherbeei_contig9856:507..1074- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGGTGAATCACTCGGCCGAGATCTGGGATGCTTGCCATTCCCCGT CGGCGACACGTTGTTGATAGGTAGGGTCTGATGAACGATGTATTGGCTTC TGGTATATTTGGTCGTAGTTAAGTATCTGGCGGTCTCCCCTTTTGAAGGT CAGAGTGAGCTGCCAGCTTATTTGCCGCACTCTCCGGACAATTTTGCACC CCTGAAAAACAATAGGCGAAACAAGGCATTTGCATCTTTACGAAGCTCGA TTTCTCGCTCTCTTTGAGAGGGCGATGAAGACGCACCACGGATGCATGGC CGCAGTTACTGTTGTGGAGGACGGCAACCTCCTCAGCGTGGCGTCCATTT GCAACGTGATTCGATGGCGGCGCAAGCAGGTCGGCGTCTCCGTCACGCTA CGCTGCGTGGGGCGCGCGCGCCTCGTCGGCGTTTCGCAGTCGCTTCCGTA CCTCTCGGCCGTCGCTAGCGAGCTTGTCGACGTTCCCGACGGCGATGCGC CTTACCCCAAGCTTTCCGCGGAGATTCACGAGCTTCATCGGCAGTGCCGT CAGCTCGAGGCGAAGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9856:507..1074-

>mRNA_P-wetherbeei_contig9856.1.1 ID=mRNA_P-wetherbeei_contig9856.1.1|Name=mRNA_P-wetherbeei_contig9856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig9856:507..1074- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGGTGAATCACTCGGCCGAGATCTGGGATGCTTGCCATTCCCCGT
CGGCGACACGTTGTTGATAGGCGAAACAAGGCATTTGCATCTTTACGAAG
CTCGATTTCTCGCTCTCTTTGAGAGGGCGATGAAGACGCACCACGGATGC
ATGGCCGCAGTTACTGTTGTGGAGGACGGCAACCTCCTCAGCGTGGCGTC
CATTTGCAACGTGATTCGATGGCGGCGCAAGCAGGTCGGCGTCTCCGTCA
CGCTACGCTGCGTGGGGCGCGCGCGCCTCGTCGGCGTTTCGCAGTCGCTT
CCGTACCTCTCGGCCGTCGCTAGCGAGCTTGTCGACGTTCCCGACGGCGA
TGCGCCTTACCCCAAGCTTTCCGCGGAGATTCACGAGCTTCATCGGCAGT
GCCGTCAGCTCGAGGCGAAGATC
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