mRNA_P-wetherbeei_contig9849.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9849.1.1
Unique NamemRNA_P-wetherbeei_contig9849.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9849.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9849contigP-wetherbeei_contig9849:144..1822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1679
Hectar predicted targeting categoryother localisation
Exons1
Cds size948
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.040282-UTR-P-wetherbeei_contig9849:143..1491683187113.040282-UTR-P-wetherbeei_contig9849:143..149Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9849 144..149 +
1683187113.0778143-UTR-P-wetherbeei_contig9849:1097..18221683187113.0778143-UTR-P-wetherbeei_contig9849:1097..1822Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9849 1098..1822 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187113.0561411-CDS-P-wetherbeei_contig9849:149..10971683187113.0561411-CDS-P-wetherbeei_contig9849:149..1097Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9849 150..1097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9849.1.1prot_P-wetherbeei_contig9849.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9849 150..1097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9849.1.1

>prot_P-wetherbeei_contig9849.1.1 ID=prot_P-wetherbeei_contig9849.1.1|Name=mRNA_P-wetherbeei_contig9849.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=316bp
MGELAEAQGEDFWGRVAAAAAAADGATAAAAAVAAAGSPAGVVGGGDGAI
VGTASPTVGLDDGFGYVSVSSDKIDLEVCSSGSAEPVLEPTPATVGATVA
ASTGNDAGRAGAAAAGGDADLRGDAEGGSDIADATKGAVISSNEDCGASS
SSGAAAADGGDSAPATSPGYSPMNVEVAPAVSEGSGGGGASGETTIATAA
PAAVAAVADCANGGGKGEVASDPVSRCDIAGDKRRSPKKPAAASRGAAEP
RGAARGGGKKSESRGGASAAQGATAATADAVPVAATGDVAASPRSDVGAG
AGARTKRTARGGARR*
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mRNA from alignment at P-wetherbeei_contig9849:144..1822+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9849.1.1 ID=mRNA_P-wetherbeei_contig9849.1.1|Name=mRNA_P-wetherbeei_contig9849.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1679bp|location=Sequence derived from alignment at P-wetherbeei_contig9849:144..1822+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCATGGGCGAGCTGGCGGAGGCGCAGGGAGAGGACTTTTGGGGCCG
CGTCGCCGCGGCTGCCGCGGCCGCCGACGGTGCCACGGCGGCGGCGGCAG
CGGTGGCGGCCGCCGGCAGTCCGGCCGGTGTCGTCGGCGGTGGCGATGGC
GCCATAGTGGGCACGGCGTCGCCGACGGTGGGGCTGGACGACGGCTTTGG
ATACGTCTCCGTGTCAAGCGATAAGATCGATTTGGAGGTGTGCAGCAGCG
GGAGCGCCGAGCCCGTGCTCGAACCTACGCCCGCTACTGTCGGTGCTACC
GTCGCTGCCAGCACTGGCAACGACGCGGGCCGTGCCGGCGCCGCTGCTGC
GGGCGGCGACGCTGACCTTCGTGGCGATGCCGAAGGCGGCTCGGATATTG
CCGACGCTACTAAGGGTGCCGTCATCTCTAGCAATGAGGACTGCGGTGCC
TCTTCATCCTCTGGAGCCGCCGCTGCAGACGGCGGTGACTCGGCTCCGGC
GACCTCACCTGGGTACTCGCCCATGAACGTCGAGGTCGCGCCGGCAGTGT
CGGAGGGAAGTGGCGGTGGTGGCGCCTCCGGTGAAACTACGATAGCTACT
GCTGCCCCAGCCGCCGTTGCCGCTGTCGCTGATTGCGCAAACGGCGGCGG
CAAGGGCGAAGTGGCAAGCGATCCCGTCAGCCGCTGCGACATCGCGGGTG
ACAAGAGGCGCTCTCCGAAGAAGCCCGCCGCCGCCTCCCGCGGGGCGGCC
GAGCCACGAGGCGCTGCAAGAGGCGGAGGCAAGAAGAGCGAATCAAGAGG
CGGCGCCTCTGCTGCACAAGGTGCTACGGCGGCCACGGCCGACGCTGTTC
CGGTCGCCGCAACGGGCGATGTTGCTGCCAGTCCCAGGAGTGATGTCGGC
GCCGGCGCCGGCGCTCGAACGAAACGAACAGCGCGTGGCGGTGCTCGCCG
GTGACAGCAGGCGATGCCTTCGTATGCCCCGTGCAAACTGACTACTCGAG
GCAGCGTGGGTGGCCGCGGAAGGAACTTGAAAGCGGATTGGCGAGGCTGT
GTCTTTAGTTGCCGCTGTCTCGCCGTCCGGCCAAGGGTTACGCACTTTAC
TTTCGCCGGGGGATTAGTGGCGGGGCGTCGCTAGTGCGGAGGATGGCGGG
TTGAAATTAGTCGGGTGGGTGGGGACGGGACGCGGCGGGATGATATTGCT
TTCGGCGCCTAGGCAGGTTACGGGAAGCGATTAGGGTTTTGCACCACACG
CCAGACCTGCTCACAATTGGCAGCGGGGCGGCCACTCAGCGGGTTTCCCA
CTGTCTTGGGCGCCGGTTCCCATGCCGGGATGGGGGGAAGGAACACAGCG
GCATCGAGCCGCGCGGGTAGATTTGAGACTGCATTTTCCTCTGGCTTCCA
AAGGGAAAAACCCCTAGCCCGTGGAAGACGACCCCCGCTGTGCCGAATCG
AGGCACCCGATGCGGCATCCAGCGGCGTGCGACGCAAGCGAGCGACGGAC
TGGGAATGGAAAGATGGGTTGGTGGCGGCAGGGGCTTAAAAAGACCGCCT
CTCTGCTCCCGGCGGGGATGGCATCACTCAGAACGACGCCTGCCGGAATG
GCGGGATGGGGAAAAAAGGGAGACCGGCGTGGCGCTTTTAGACAGAAGCC
GCCGCGCCGGGCTGCTGGCTGAGGCTGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9849:144..1822+

>mRNA_P-wetherbeei_contig9849.1.1 ID=mRNA_P-wetherbeei_contig9849.1.1|Name=mRNA_P-wetherbeei_contig9849.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=948bp|location=Sequence derived from alignment at P-wetherbeei_contig9849:144..1822+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGAGCTGGCGGAGGCGCAGGGAGAGGACTTTTGGGGCCGCGTCGC
CGCGGCTGCCGCGGCCGCCGACGGTGCCACGGCGGCGGCGGCAGCGGTGG
CGGCCGCCGGCAGTCCGGCCGGTGTCGTCGGCGGTGGCGATGGCGCCATA
GTGGGCACGGCGTCGCCGACGGTGGGGCTGGACGACGGCTTTGGATACGT
CTCCGTGTCAAGCGATAAGATCGATTTGGAGGTGTGCAGCAGCGGGAGCG
CCGAGCCCGTGCTCGAACCTACGCCCGCTACTGTCGGTGCTACCGTCGCT
GCCAGCACTGGCAACGACGCGGGCCGTGCCGGCGCCGCTGCTGCGGGCGG
CGACGCTGACCTTCGTGGCGATGCCGAAGGCGGCTCGGATATTGCCGACG
CTACTAAGGGTGCCGTCATCTCTAGCAATGAGGACTGCGGTGCCTCTTCA
TCCTCTGGAGCCGCCGCTGCAGACGGCGGTGACTCGGCTCCGGCGACCTC
ACCTGGGTACTCGCCCATGAACGTCGAGGTCGCGCCGGCAGTGTCGGAGG
GAAGTGGCGGTGGTGGCGCCTCCGGTGAAACTACGATAGCTACTGCTGCC
CCAGCCGCCGTTGCCGCTGTCGCTGATTGCGCAAACGGCGGCGGCAAGGG
CGAAGTGGCAAGCGATCCCGTCAGCCGCTGCGACATCGCGGGTGACAAGA
GGCGCTCTCCGAAGAAGCCCGCCGCCGCCTCCCGCGGGGCGGCCGAGCCA
CGAGGCGCTGCAAGAGGCGGAGGCAAGAAGAGCGAATCAAGAGGCGGCGC
CTCTGCTGCACAAGGTGCTACGGCGGCCACGGCCGACGCTGTTCCGGTCG
CCGCAACGGGCGATGTTGCTGCCAGTCCCAGGAGTGATGTCGGCGCCGGC
GCCGGCGCTCGAACGAAACGAACAGCGCGTGGCGGTGCTCGCCGGTGA
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