mRNA_P-wetherbeei_contig9840.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9840.1.1
Unique NamemRNA_P-wetherbeei_contig9840.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9840.1.1 vs. uniprot
Match: A0A6U5LA03_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5LA03_9STRA)

HSP 1 Score: 112 bits (279), Expect = 9.190e-25
Identity = 57/88 (64.77%), Postives = 69/88 (78.41%), Query Frame = 3 
Query:  696 VYDVTQRATFEHLGRWLAEARQNADNPHLVVMCIANKGDLDHARQVSAEEGRAFAEENGLQFAEVSAKNSTQVEEVFVRTAERIFEEL 959
            VYDVT+R TFEH+GRWL EARQNA + ++VVM I NK DL+H R V+ EEG+AFAEENGL FAE SAK +  VE  FV TAE+I+E +
Sbjct:   85 VYDVTRRDTFEHVGRWLEEARQNAQS-NMVVMLIGNKNDLEHRRAVTTEEGKAFAEENGLIFAETSAKTADGVEGAFVDTAEKIYENI 171
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BLAST of mRNA_P-wetherbeei_contig9840.1.1 vs. uniprot
Match: F0Y2Q0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Q0_AURAN)

HSP 1 Score: 110 bits (275), Expect = 2.690e-24
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 3 
Query:  696 VYDVTQRATFEHLGRWLAEARQNADNPHLVVMCIANKGDLDHARQVSAEEGRAFAEENGLQFAEVSAKNSTQVEEVFVRTAERIFEELETNPRPKHKGGIKMKPPDSRKQKSE 1034
            VYDVT+R +F+HL RWL EA+QNA NP+LV+M + NK DL+ +RQ+S  EG+AFA+ +G+ F E++AKN   VE VFV +A+R+      NPR K    +K++P +SR +K +
Sbjct:   92 VYDVTRRESFDHLPRWLNEAKQNASNPNLVLMLVGNKADLEGSRQISRAEGKAFADLHGMLFVELTAKNQNLVESVFVESAQRVLAVQRANPRAKS-AAVKLQP-ESRAKKDD 202
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BLAST of mRNA_P-wetherbeei_contig9840.1.1 vs. uniprot
Match: A0A7S2CHD5_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2CHD5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.760e-24
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 3 
Query:  696 VYDVTQRATFEHLGRWLAEARQNADNPHLVVMCIANKGDLDHARQVSAEEGRAFAEENGLQFAEVSAKNSTQVEEVFVRTAERIFEEL 959
            VYD+T+R TF HL RWL EA+QN+ NP++V+M I NK DLDH R VS +EG  FAEENGL F E SAK +  VE+ F++TAE+I+E++
Sbjct:   85 VYDITRRDTFNHLTRWLEEAKQNS-NPNMVIMLIGNKSDLDHRRAVSTKEGEQFAEENGLIFLETSAKTAANVEQAFIKTAEKIYEKI 171
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BLAST of mRNA_P-wetherbeei_contig9840.1.1 vs. uniprot
Match: A0A8J2S4D0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4D0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.610e-24
Identity = 53/93 (56.99%), Postives = 68/93 (73.12%), Query Frame = 3 
Query:  696 VYDVTQRATFEHLGRWLAEARQNADNPHLVVMCIANKGDLDHARQVSAEEGRAFAEENGLQFAEVSAKNSTQVEEVFVRTAERIFEELETNPR 974
            VYDVT+R +F+HLGRWL EARQNA NP LV+M + NK DL+  RQ+S  EG+AFA+ +G+ F E+SAKN   VE VFV +A+R+      NPR
Sbjct:   91 VYDVTRRESFDHLGRWLQEARQNAANPDLVLMLVGNKADLESKRQISRAEGKAFADLHGMLFVELSAKNEKLVESVFVESAQRVLNVRRDNPR 183
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BLAST of mRNA_P-wetherbeei_contig9840.1.1 vs. uniprot
Match: A0A0G4IZI2_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophoridae TaxID=37358 RepID=A0A0G4IZI2_PLABS)

HSP 1 Score: 108 bits (270), Expect = 1.290e-23
Identity = 51/90 (56.67%), Postives = 69/90 (76.67%), Query Frame = 3 
Query:  696 VYDVTQRATFEHLGRWLAEARQNADNPHLVVMCIANKGDLDHARQVSAEEGRAFAEENGLQFAEVSAKNSTQVEEVFVRTAERIFEELET 965
            VYD+T+R TF HL RWL EARQN  N ++ +M I NK DL+H RQ+S EEG AFA++NGL F E SAK +  VEE F++TAE+I+E++++
Sbjct:   85 VYDITRRETFAHLARWLEEARQNG-NRNMTIMLIGNKSDLEHRRQISKEEGEAFAKDNGLIFFETSAKTAANVEEAFIQTAEQIYEKIQS 173
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BLAST of mRNA_P-wetherbeei_contig9840.1.1 vs. uniprot
Match: A0A6V1NY85_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NY85_HETAK)

HSP 1 Score: 106 bits (264), Expect = 9.300e-23
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:  696 VYDVTQRATFEHLGRWLAEARQNADNPHLVVMCIANKGDLDHARQVSAEEGRAFAEENGLQFAEVSAKNSTQVEEVFVRTAERIFEEL 959
            VYD+T+R TF HL RWL EARQN+ N ++V+M I NK DL+H R VS +EG  FAEENGL F E SAK +  VE+ F++TAE+I+E +
Sbjct:   85 VYDITRRDTFNHLTRWLEEARQNS-NSNMVIMLIGNKADLEHRRAVSTKEGEQFAEENGLIFLETSAKTAQNVEDAFIKTAEKIYENI 171
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BLAST of mRNA_P-wetherbeei_contig9840.1.1 vs. uniprot
Match: A0A6A7GBT2_9CRUS (Rab2 family GTPase (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GBT2_9CRUS)

HSP 1 Score: 106 bits (264), Expect = 1.100e-22
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 3 
Query:  696 VYDVTQRATFEHLGRWLAEARQNADNPHLVVMCIANKGDLDHARQVSAEEGRAFAEENGLQFAEVSAKNSTQVEEVFVRTAERIFEELET 965
            VYDVT+R TF HL RWL EARQN  N ++ +M I NK DLDH RQVS EEG  FA+ENGL F E SAK +  VE  F+ TA++I+E+++T
Sbjct:   90 VYDVTRRETFNHLERWLKEARQNG-NENMTIMLIGNKLDLDHRRQVSQEEGENFAKENGLIFLETSAKTADNVEAAFINTAQKIYEKIQT 178
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BLAST of mRNA_P-wetherbeei_contig9840.1.1 vs. uniprot
Match: A0A7S3DPV0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DPV0_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.380e-22
Identity = 49/90 (54.44%), Postives = 69/90 (76.67%), Query Frame = 3 
Query:  696 VYDVTQRATFEHLGRWLAEARQNADNPHLVVMCIANKGDLDHARQVSAEEGRAFAEENGLQFAEVSAKNSTQVEEVFVRTAERIFEELET 965
            VYD+T+R TF+HLGRWL EA+Q+A  P++V++ I NK DL+H R VS EEG+AFA+ NGL F E SAK +  VE+ F++TAE I  ++++
Sbjct:   86 VYDITRRDTFQHLGRWLEEAKQHAQ-PNMVILLIGNKNDLEHRRAVSTEEGKAFADANGLLFMETSAKTAYNVEQAFLKTAEEIHSKIQS 174
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BLAST of mRNA_P-wetherbeei_contig9840.1.1 vs. uniprot
Match: A0A7S2V0L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0L3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.620e-22
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 3 
Query:  696 VYDVTQRATFEHLGRWLAEARQNADNPHLVVMCIANKGDLDHARQVSAEEGRAFAEENGLQFAEVSAKNSTQVEEVFVRTAERIFEEL 959
            VYD+T+R TF HL RWL EARQN+ N ++V+M I NK DL+H R VS +EG  FAEENGL F E SAK +  VE  F++TAE+I+E +
Sbjct:  115 VYDITRRETFSHLTRWLEEARQNS-NSNMVIMLIGNKSDLEHRRAVSTKEGEQFAEENGLIFLETSAKTAENVEAAFIKTAEKIYENI 201
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BLAST of mRNA_P-wetherbeei_contig9840.1.1 vs. uniprot
Match: D8M4Y0_BLAHO (Uncharacterized protein n=3 Tax=Blastocystis TaxID=12967 RepID=D8M4Y0_BLAHO)

HSP 1 Score: 103 bits (258), Expect = 6.350e-22
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 3 
Query:  696 VYDVTQRATFEHLGRWLAEARQNADNPHLVVMCIANKGDLDHARQVSAEEGRAFAEENGLQFAEVSAKNSTQVEEVFVRTAERIFEELET 965
            VYD+T+R TF  L +WL EAR+N  + ++V+M I NK DL+H R VS EEG  FAEENGL F E SAK +  VEE FV+TAE+I+  +ET
Sbjct:   85 VYDITRRETFTQLTKWLTEARENGSS-NMVIMLIGNKSDLNHRRTVSTEEGEKFAEENGLIFLETSAKTAANVEEAFVKTAEKIYHNIET 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9840.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U5LA03_9STRA9.190e-2564.77Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
F0Y2Q0_AURAN2.690e-2449.56Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2CHD5_9STRA2.760e-2459.09Hypothetical protein n=3 Tax=Dictyochophyceae TaxI... [more]
A0A8J2S4D0_9STRA3.610e-2456.99Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0G4IZI2_PLABS1.290e-2356.67Uncharacterized protein n=2 Tax=Plasmodiophoridae ... [more]
A0A6V1NY85_HETAK9.300e-2357.95Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6A7GBT2_9CRUS1.100e-2258.89Rab2 family GTPase (Fragment) n=1 Tax=Hirondellea ... [more]
A0A7S3DPV0_9STRA3.380e-2254.44Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2V0L3_9STRA3.620e-2257.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8M4Y0_BLAHO6.350e-2256.67Uncharacterized protein n=3 Tax=Blastocystis TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9840contigP-wetherbeei_contig9840:151..2455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIT3
Preferred nameRab2
PFAMsRas,Roc
Model size1514
Max annot lvl2759|Eukaryota
KEGG koko:K07877
KEGG Pathwayko04152,map04152
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000331,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0006810,GO:0006897,GO:0006909,GO:0006950,GO:0006970,GO:0008150,GO:0008219,GO:0009628,GO:0009987,GO:0012505,GO:0016020,GO:0016192,GO:0017157,GO:0030587,GO:0031090,GO:0031164,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032879,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045921,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0060627,GO:0065007,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0099120,GO:1903530,GO:1903532
Exons3
Evalue2.3e-18
EggNOG OGsCOG1100@1|root,KOG0098@2759|Eukaryota
Ec32 ortholog descriptionRab2A, RAB family GTPase
Ec32 orthologEc-25_000850.1
DescriptionGTPase activity
Cds size261
COG categoryF
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187112.8269036-UTR-P-wetherbeei_contig9840:150..6151683187112.8269036-UTR-P-wetherbeei_contig9840:150..615Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9840 151..615 -
1683187112.8729289-UTR-P-wetherbeei_contig9840:1667..24551683187112.8729289-UTR-P-wetherbeei_contig9840:1667..2455Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9840 1668..2455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187112.84015-CDS-P-wetherbeei_contig9840:615..7531683187112.84015-CDS-P-wetherbeei_contig9840:615..753Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9840 616..753 -
1683187112.850671-CDS-P-wetherbeei_contig9840:1033..11211683187112.850671-CDS-P-wetherbeei_contig9840:1033..1121Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9840 1034..1121 -
1683187112.864148-CDS-P-wetherbeei_contig9840:1632..16671683187112.864148-CDS-P-wetherbeei_contig9840:1632..1667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9840 1633..1667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9840.1.1prot_P-wetherbeei_contig9840.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9840 616..1667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9840.1.1

>prot_P-wetherbeei_contig9840.1.1 ID=prot_P-wetherbeei_contig9840.1.1|Name=mRNA_P-wetherbeei_contig9840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MCIANKGDLDHARQVSAEEGRAFAEENGLQFAEVSAKNSTQVEEVFVRTA
ERIFEELETNPRPKHKGGIKMKPPDSRKQKSECCDF*
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mRNA from alignment at P-wetherbeei_contig9840:151..2455-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9840.1.1 ID=mRNA_P-wetherbeei_contig9840.1.1|Name=mRNA_P-wetherbeei_contig9840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2305bp|location=Sequence derived from alignment at P-wetherbeei_contig9840:151..2455- (Phaeothamnion wetherbeei SAG_119_79)
CGGAGCTATTACCGATCTTCTTTCGGGTGCCTCTTGGCAAGTGGTTTGCA
ATCGCGGCATCTATTTCCAAACGTGAAGGTTTTTAAACAGTGGTTTGCGT
CATCACTCGTCCCTCGATTTCAGTTGCCACGGCATCGCTTCCCCTGCTTA
CTTCTAAGACCCTTGCCCCACTTCAGAATTTCCCAATCTCAGAATTATTT
GGCCTAGAGCTTGGAACGGAATTTTTTGGCATCCACGCCCCCCCCGATTT
GCCGAGGGGGCAGGGGGAGGGGGTGTATGATACCCTGATGCTAAAGGATA
TTAAGGAAGGCGATATGAGCCTTCTCCCGCTGTTACCGATATTTTCGCCT
AAAAAGGGAAAAACAAAATGTTCGCGCGATGGAATAAAGTAGTTGCATCG
CGTAAACTTTCGCTAACAACACCCGAACCCTGACCCGTGTTGGCAGTCTA
GCGCCTGACACCTAATATATATGTAGCATAAGTGTGCGCCGCAATCAGTT
CTCCCCCATCGTTCCCGTTCAACTTTTCGGGTTTTTTGGGGGGGGTATGG
ACGCCAAAAATCCCTCCCCTGGATAAGTGGAATAGTTGTCCCTTAGAACT
TGGTTGGCTCACACCGTTTTCTGTTCCATTCTTCTGCACGCTGCATTTCT
GCGTGGCGCGTTCCTGCATGCCGGTTCTGCCGCTTTCATCGGCAGGTGTA
CGACGTGACGCAGCGGGCGACGTTTGAGCACCTGGGGCGGTGGCTGGCGG
AGGCGCGGCAGAATGCCGACAACCCCCACCTCGTCGTCATGTGCATCGCC
AACAAGGGCGACCTCGACCACGCGTGAGTAGTTTCCTTTCGTCCGGTTGA
AAAGAGCTCTAACTGATCAGTGACGTAAACGGGGTTGGTTGAAAAGGGGA
ATGTTCCTGAGCGCAACTGATCCAAGGCTGCTTCTGTTGGAGTTTAAGGT
TGGAGCGTTTGGGGCTTGAGCGTGCAAAATTAGTGAGTGATGTGCCTTGC
GGCGGCCGCGCCGCTTCTGCGGCAGAACGGGGCCGCGGCGGCAGTTATTG
CAGATGTTGGGTGCATGCTGATTTCCCTCCTCCCCTCTTTTCTATCTGCC
TGCCTTTCGTTTTAGAGTTTGCGTAGGGATGGCTGGCGCTCGTCCGTGTT
CTGTCCGTTTGTCCCGTATTTTTTTAATATCATGGTTTCATGGCGTTCAG
AGTGGGGCTCACGTTATCGCCGAGCGCTCTGGAGGATGAATCAGGCAGTT
TGTGCATCAGTGCGTGTCGTTAAGCCTTCTTGCTTCTCGTTGTCCGTGCC
TCAAACGGTTTCTTCTGCCGGACCGGCTCATCAGGCGGCAAGTCTCCGCG
GAGGAAGGGCGGGCGTTTGCGGAAGAGAATGGCTTGCAGTTCGCAGAAGT
CAGCGCAAAGAACAGCACCCAGGTATGGCCAAATCCCCTCCCAACCCTGA
TGGTTGGTTTCCGTTCATTGAGTTGTGACCACTCTCAATCTTGATAGATC
AGAGTGCGCCCCTGCTTTAAGTGTGTTGTTGAGGGTCTGATGAAACACAC
TGCGTGCGGAGGCGGCCTTTTGTTGTCTTCGTTCCTGCGCGTGGCCGCGG
CCGCAGGTCGTAGCTGCAAGGCGCGTCAAACCGAATCAATTGCTAAACAA
ATTACAATTGCGGGGGCCCAACTGGAACGAAACCCAAAAAATCCTCGGAC
AGGTAGAAGAGGTGTTTGTGCGGACAGCGGAGCGCATTTTTGAAGAGCTT
GAGACGAATCCGCGCCCCAAACACAAGGGGGGCATCAAGATGAAGCCACC
AGACTCGAGGAAGCAGAAGTCAGAGTGCTGCGACTTTTAGCCTGCTGCCG
CCACCGTCGCCGCCGCTGCTGCCGCCGTCGCTGCTGCTGCCGCCGCTGGC
ACTGGCTTATTGGCTCCGTGCCGTGGCGGAGTGGGGCTAAGCCTTCCACA
ATGGGTCCAGCATTGGGCGAATAGAAGGAAGAAGGAACGAGGGAGAGATT
GTTCTTCGGAGGCGCTTTTCGCATGCCAGCCGCGGGAAGAACACAGCTTG
GCGGATTTGTGCCCTTCTTGTCCCGCCGGCGCCGCAAAAGCCAAAGCGGA
GGGTTCGCTTGTATTCGAGAAGCTTTAGCTGCCGCATGGTGCCGCGCGGC
GGGGGCGGGTGGGCGCACCCGTGAGCGGGCAGGCATCTCACAGTCCCGTT
CGCCGGTTGAGGCAGCGCGGTATGTCGTTGGGGAGACGTTGAGACAGGCT
GAGGCTGCGATCCGCCGCAGTCGTCGCATGTAATGACCAACTTTTGAATC
CCCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9840:151..2455-

>mRNA_P-wetherbeei_contig9840.1.1 ID=mRNA_P-wetherbeei_contig9840.1.1|Name=mRNA_P-wetherbeei_contig9840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig9840:151..2455- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCATCGCCAACAAGGGCGACCTCGACCACGCGCGGCAAGTCTCCGC
GGAGGAAGGGCGGGCGTTTGCGGAAGAGAATGGCTTGCAGTTCGCAGAAG
TCAGCGCAAAGAACAGCACCCAGGTAGAAGAGGTGTTTGTGCGGACAGCG
GAGCGCATTTTTGAAGAGCTTGAGACGAATCCGCGCCCCAAACACAAGGG
GGGCATCAAGATGAAGCCACCAGACTCGAGGAAGCAGAAGTCAGAGTGCT
GCGACTTTTAG
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