mRNA_P-wetherbeei_contig9837.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9837.3.1
Unique NamemRNA_P-wetherbeei_contig9837.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9837.3.1 vs. uniprot
Match: A0A0S8B0V0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B0V0_9PROT)

HSP 1 Score: 94.7 bits (234), Expect = 2.540e-23
Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   43 MGAALEGDGGGVGVPHGTLLVEFGEAMLRGDEARRARARDALCAGMGTAALVDAAAIVASFNSVVKLADGSGIPLEDFKSEAT 291
            MGAAL G G    VP   LLVEF E++LRG+  R+  AR+ L   +G AALVDAAAIVASFN+VVK+ADG+GIPLE  K+ AT
Sbjct:    1 MGAALPGSGADARVPQAALLVEFAESLLRGEAVRQRAARETLARALGAAALVDAAAIVASFNAVVKIADGTGIPLEAAKAAAT 83          
BLAST of mRNA_P-wetherbeei_contig9837.3.1 vs. uniprot
Match: A0A2D6T2Y1_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6T2Y1_9PROT)

HSP 1 Score: 86.3 bits (212), Expect = 9.280e-20
Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    1 LLRASGKHAGEEYDMGAAL-EGDGGGVGVPHGTLLVEFGEAMLRGDEARRARARDALCAGMGTAALVDAAAIVASFNSVVKLADGSGIPLEDFKSEAT 291
            LLRASG+  G +YD+ A L EGDG   GVPHG LL  F EA+L  D+A     R  L   +G  ALVD A ++A+FNS+ ++AD +GIPLE+ K+E T
Sbjct:    2 LLRASGQFTGNDYDLRAVLGEGDG---GVPHGRLLTLFAEAVLDDDDAALDAVRSELRQTLGDEALVDTAGVIATFNSIDRVADATGIPLEEKKAEVT 96          
BLAST of mRNA_P-wetherbeei_contig9837.3.1 vs. uniprot
Match: A0A382ALR4_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382ALR4_9ZZZZ)

HSP 1 Score: 83.6 bits (205), Expect = 1.010e-18
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    4 LRASGKHAGEEYDMGAALEGDGGGVGVPHGTLLVEFGEAMLRGDEARRARARDALCAGMGTAALVDAAAIVASFNSVVKLADGSGIPLEDFKSEAT 291
            L  SG+H G+EY +  A+  + G  G+P G+LL EF EA+   DE+  A+ R+ +   +G AA+VD AA++A+FN   + AD +GIPLED+K EAT
Sbjct:    3 LSLSGEHTGDEYALSTAVGSETGDGGLPMGSLLNEFIEAVCSQDESGIAQGRENIMRELGEAAMVDTAAVIAAFNGYPRAADATGIPLEDYKEEAT 98          
BLAST of mRNA_P-wetherbeei_contig9837.3.1 vs. uniprot
Match: A0A7X4C060_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7X4C060_9PROT)

HSP 1 Score: 79.3 bits (194), Expect = 4.430e-17
Identity = 43/94 (45.74%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 LLRASGKHAGEEYDMGAALEGDGGGVGVPHGTLLVEFGEAMLRGDEARRARARDALCAGMGTAALVDAAAIVASFNSVVKLADGSGIPLEDFKS 282
            LLR SG+H G++YD+ A   GDG G GV  G  L  + ++      A    ARD L   +G  ALVDAA ++A FN+VV++AD +GIPLE+ K+
Sbjct:    2 LLRESGRHTGDDYDLAAMAAGDGTGGGVAAGAALTAYADSFYEEGRAGFPAARDRLHEEIGAEALVDAAGVLAIFNAVVRVADATGIPLEEQKA 95          
BLAST of mRNA_P-wetherbeei_contig9837.3.1 vs. uniprot
Match: UPI000B7FD53B (hypothetical protein n=1 Tax=Candidatus Entotheonella palauensis TaxID=93172 RepID=UPI000B7FD53B)

HSP 1 Score: 78.2 bits (191), Expect = 3.350e-16
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    4 LRASGKHAGEEYDMGAALEGDGGGVGVPHGTLLVEFGEAMLRGDEARRARARDALCAGMGTAALVDAAAIVASFNSVVKLADGSGIPLEDFKSEAT 291
            LR SG+  G  Y++ A +     G G+ H  L+  F EA+   D  R +  R+AL   +G A +VDAAA++A+FN+  ++AD +GIPLED K EAT
Sbjct:    3 LRVSGEQTGNTYNLQAVMGATVSGAGIAHHELMNHFAEAICAMDTMRTSDVREALTQALGEAVMVDAAAVIAAFNAYPRMADATGIPLEDAKREAT 98          
BLAST of mRNA_P-wetherbeei_contig9837.3.1 vs. uniprot
Match: A0A848W731_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A848W731_9PROT)

HSP 1 Score: 76.6 bits (187), Expect = 4.930e-16
Identity = 41/90 (45.56%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    4 LRASGKHAGEEYDMGAALEGDGGGVGVPHGTLLVEFGEAMLRGDEARRARARDALCAGMGTAALVDAAAIVASFNSVVKLADGSGIPLED 273
            LRASG+ +G +YD+ AA+    G  GVP G +L  F E +++GDE + ARAR+++ A  G A +VDAAAI A F+++ ++AD +G+ L+D
Sbjct:    4 LRASGQKSGHDYDLAAAVGQAVGNGGVPGGEVLRRFAETIIKGDENQLARARNSVRAAFGDAGMVDAAAIAAQFDALDRVADATGMYLDD 93          
BLAST of mRNA_P-wetherbeei_contig9837.3.1 vs. uniprot
Match: A0A6A7M669_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7M669_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 3.780e-15
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    1 LLRASGKHAGEEYDMGAALEGDGGGVGVPHGTLLVEFGEAMLRGDEARRARARDALCAGMGTAALVDAAAIVASFNSVVKLADGSGIPLEDFKSEAT 291
            LLR SG+H+G +Y     ++G+G G GV H   L+ F ++ L G        R AL A +G+ A+ DAAA++A F+++ ++ADGSGIPLE  ++EAT
Sbjct:    3 LLRGSGRHSGTDYRFEGIVDGNG-GSGVAHEAELLAFADSAL-GVAGHVDETRSALVAVLGSDAMTDAAAVIAGFDAITRVADGSGIPLEPARAEAT 97          
BLAST of mRNA_P-wetherbeei_contig9837.3.1 vs. uniprot
Match: A0A2E5NR99_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5NR99_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 3.880e-15
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 LLRASGKHAGEEYDMGAALEG-DGGGVGVPHGTLLVEFGEAMLRGDEARRARARDALCAGMGTAALVDAAAIVASFNSVVKLADGSGIPLEDFKSE 285
            LLRASG+    + D+G  + G D     +PHG +L++F EA + G E     AR A+   +G A LVDAAA+V +F   V++AD +GIPL++F  E
Sbjct:    3 LLRASGEATRTKVDLGVVMTGRDPTNTEIPHGEILLKFAEAAVAGGEEEMVAARQAVLTALGPAELVDAAAVVGNFERNVRVADATGIPLDEFLEE 98          
BLAST of mRNA_P-wetherbeei_contig9837.3.1 vs. uniprot
Match: A0A317HNJ7_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317HNJ7_9PROT)

HSP 1 Score: 73.2 bits (178), Expect = 4.580e-15
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   43 MGAALEGDGGGVGVPHGTLLVEFGEAMLRGDEARRARARDALCAGMGTAALVDAAAIVASFNSVVKLADGSGIPLEDFKSEAT 291
            MGA  +G+     + HG LLV F +A+L GD+ R A  R  +   +G AALVDAAA+VA+FN++ ++AD +GIP+E  K EAT
Sbjct:    1 MGAPGDGN-----IAHGALLVSFADAVLDGDDRRLATVRSEIADRLGAAALVDAAAVVATFNAIDRVADATGIPIEPAKVEAT 78          
BLAST of mRNA_P-wetherbeei_contig9837.3.1 vs. uniprot
Match: A0A6B1HJY2_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6B1HJY2_9PROT)

HSP 1 Score: 73.9 bits (180), Expect = 6.230e-15
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 LLRASGKHAGEEYDMGAAL---EGDGG-GVGVPHGTLLVEFGEAMLRGDEARRARARDALCAGMGTAALVDAAAIVASFNSVVKLADGSGIPLEDFKSE 285
            LLR SG+H G++YD+ A +   E DGG G        L  + +A   G +   A ARD L A +G AALVDAA ++A FN+VV++AD +GIPLED K+E
Sbjct:    2 LLRGSGEHTGDDYDLAAIVPDREKDGGSGXXXXXXAALTAYADAFFDGGQ-DFAAARDRLHAEIGGAALVDAAGVLAIFNAVVRIADATGIPLEDQKAE 99          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9837.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S8B0V0_9PROT2.540e-2361.45Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A2D6T2Y1_9PROT9.280e-2051.02Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A382ALR4_9ZZZZ1.010e-1845.83Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A7X4C060_9PROT4.430e-1745.74Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
UPI000B7FD53B3.350e-1642.71hypothetical protein n=1 Tax=Candidatus Entotheone... [more]
A0A848W731_9PROT4.930e-1645.56Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A6A7M669_9PROT3.780e-1543.30Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A2E5NR99_9ACTN3.880e-1542.71Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A317HNJ7_9PROT4.580e-1548.19Uncharacterized protein (Fragment) n=1 Tax=Proteob... [more]
A0A6B1HJY2_9PROT6.230e-1547.47Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9837contigP-wetherbeei_contig9837:2170..2460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size291
Hectar predicted targeting categoryother localisation
Exons1
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187112.5854418-CDS-P-wetherbeei_contig9837:2169..24601683187112.5854418-CDS-P-wetherbeei_contig9837:2169..2460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9837 2170..2460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9837.3.1prot_P-wetherbeei_contig9837.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9837 2170..2460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9837.3.1

>prot_P-wetherbeei_contig9837.3.1 ID=prot_P-wetherbeei_contig9837.3.1|Name=mRNA_P-wetherbeei_contig9837.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
LLRASGKHAGEEYDMGAALEGDGGGVGVPHGTLLVEFGEAMLRGDEARRA
RARDALCAGMGTAALVDAAAIVASFNSVVKLADGSGIPLEDFKSEAT
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mRNA from alignment at P-wetherbeei_contig9837:2170..2460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9837.3.1 ID=mRNA_P-wetherbeei_contig9837.3.1|Name=mRNA_P-wetherbeei_contig9837.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig9837:2170..2460+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTCCGTGCGAGCGGCAAGCATGCAGGCGAGGAGTACGACATGGGTGC CGCGCTCGAGGGCGACGGCGGCGGGGTCGGGGTTCCCCATGGCACGCTGC TCGTCGAGTTCGGCGAGGCGATGCTGCGCGGCGACGAGGCGCGGCGCGCG AGGGCGCGCGACGCGCTTTGCGCCGGGATGGGCACCGCGGCGCTGGTCGA TGCGGCCGCGATCGTCGCGTCCTTCAATTCGGTGGTGAAGCTCGCCGACG GGAGCGGGATCCCGCTGGAGGATTTCAAATCGGAGGCGACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9837:2170..2460+

>mRNA_P-wetherbeei_contig9837.3.1 ID=mRNA_P-wetherbeei_contig9837.3.1|Name=mRNA_P-wetherbeei_contig9837.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig9837:2170..2460+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTCCGTGCGAGCGGCAAGCATGCAGGCGAGGAGTACGACATGGGTGC
CGCGCTCGAGGGCGACGGCGGCGGGGTCGGGGTTCCCCATGGCACGCTGC
TCGTCGAGTTCGGCGAGGCGATGCTGCGCGGCGACGAGGCGCGGCGCGCG
AGGGCGCGCGACGCGCTTTGCGCCGGGATGGGCACCGCGGCGCTGGTCGA
TGCGGCCGCGATCGTCGCGTCCTTCAATTCGGTGGTGAAGCTCGCCGACG
GGAGCGGGATCCCGCTGGAGGATTTCAAATCGGAGGCGACC
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