mRNA_P-wetherbeei_contig9834.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9834.1.1
Unique NamemRNA_P-wetherbeei_contig9834.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9834.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9834contigP-wetherbeei_contig9834:991..1782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size583
Hectar predicted targeting categoryother localisation
Exons2
Cds size579
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187112.3839772-CDS-P-wetherbeei_contig9834:992..11001683187112.3839772-CDS-P-wetherbeei_contig9834:992..1100Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9834 993..1100 -
1683187112.3937907-CDS-P-wetherbeei_contig9834:1311..17821683187112.3937907-CDS-P-wetherbeei_contig9834:1311..1782Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9834 1312..1782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9834.1.1prot_P-wetherbeei_contig9834.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9834 993..1782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9834.1.1

>prot_P-wetherbeei_contig9834.1.1 ID=prot_P-wetherbeei_contig9834.1.1|Name=mRNA_P-wetherbeei_contig9834.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
SNTDTKKPNTFPGWAKDSNSEDGWSSKVNGTGYFVKKDDKDLWKATSFDS
VVSLGKEIQKPLFKDDITSFPSAVSTIPQYVDVRSMPYFKWTDGAVSNYF
ARVITGQNVTYMCDQTTKIKTNWETVGDVWDVIFFFDWTNSTTKNDVTRM
QFAAFDVYDYLLDWGYEADPSEAKNNKTAGLGDYVEYWPWGYK
back to top

mRNA from alignment at P-wetherbeei_contig9834:991..1782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9834.1.1 ID=mRNA_P-wetherbeei_contig9834.1.1|Name=mRNA_P-wetherbeei_contig9834.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=792bp|location=Sequence derived from alignment at P-wetherbeei_contig9834:991..1782- (Phaeothamnion wetherbeei SAG_119_79)
TCCAACACGGACACCAAGAAGCCCAACACGTTCCCCGGCTGGGCCAAGGA
CAGCAACTCGGAGGACGGCTGGTCCTCCAAGGTGAACGGAACGGGCTACT
TCGTAAAAAAAGACGACAAGGATTTGTGGAAGGCCACGAGCTTCGACAGC
GTCGTCAGCCTAGGAAAGGAGATCCAGAAGCCGCTTTTCAAGGACGACAT
TACCTCGTTTCCGAGCGCCGTCTCGACCATCCCACAGTACGTGGACGTCC
GGAGCATGCCGTACTTCAAGTGGACGGACGGCGCCGTCTCCAACTACTTT
GCGCGCGTCATCACCGGCCAGAACGTGACTTACATGTGCGATCAGACCAC
CAAGATCAAGACCAACTGGGAGACCGTCGGCGACGTGTGGGATGTCATTT
TTTTCTTCGACTGGACCAACTCTACCACCAAGAACGACGTTACGCGCATG
CAGTTTGCGGCCTTCGATGTGGTGAGTGGATGGGGCCACCCGGCCAGCCG
CGCGGCTGGGCGGGCTGCTGCTGCGAGGAGAGGCATGTTGCCTTGGCCGA
ACTTTGAGCCTGGGTGGACTTTGACCTGAGAAGCGCATACGAACGTCGCC
GCCGCCACCGCTGCCGCTGCCGCTCGCTGCGCGCTGCTACCATCGCCGCC
GCCGCCGCCGCCGCCGCTCCCGCGGTGCACAGTATGACTACCTGCTCGAC
TGGGGCTATGAGGCCGACCCGTCCGAAGCTAAGAACAACAAGACGGCCGG
CCTCGGAGACTATGTGGAGTATTGGCCATGGGGATACAAGAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9834:991..1782-

>mRNA_P-wetherbeei_contig9834.1.1 ID=mRNA_P-wetherbeei_contig9834.1.1|Name=mRNA_P-wetherbeei_contig9834.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig9834:991..1782- (Phaeothamnion wetherbeei SAG_119_79)
TCCAACACGGACACCAAGAAGCCCAACACGTTCCCCGGCTGGGCCAAGGA
CAGCAACTCGGAGGACGGCTGGTCCTCCAAGGTGAACGGAACGGGCTACT
TCGTAAAAAAAGACGACAAGGATTTGTGGAAGGCCACGAGCTTCGACAGC
GTCGTCAGCCTAGGAAAGGAGATCCAGAAGCCGCTTTTCAAGGACGACAT
TACCTCGTTTCCGAGCGCCGTCTCGACCATCCCACAGTACGTGGACGTCC
GGAGCATGCCGTACTTCAAGTGGACGGACGGCGCCGTCTCCAACTACTTT
GCGCGCGTCATCACCGGCCAGAACGTGACTTACATGTGCGATCAGACCAC
CAAGATCAAGACCAACTGGGAGACCGTCGGCGACGTGTGGGATGTCATTT
TTTTCTTCGACTGGACCAACTCTACCACCAAGAACGACGTTACGCGCATG
CAGTTTGCGGCCTTCGATGTGTATGACTACCTGCTCGACTGGGGCTATGA
GGCCGACCCGTCCGAAGCTAAGAACAACAAGACGGCCGGCCTCGGAGACT
ATGTGGAGTATTGGCCATGGGGATACAAG
back to top