mRNA_P-wetherbeei_contig9819.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9819.1.1
Unique NamemRNA_P-wetherbeei_contig9819.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9819.1.1 vs. uniprot
Match: A0A6H5L0I6_9PHAE (tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.000e-22
Identity = 78/197 (39.59%), Postives = 102/197 (51.78%), Query Frame = 2 
Query:   17 LFWKDVLREVVHSLGMPAMRDKAIGTFIDHVGGTQDPAP-RACWLELRAEYRVYIEAGVLYIFRPDVF--PREPHSEACAGRQVPL-GGTVRAGPWLITAMATVAAAATRAHHQEEDGADXGAADAGREAAAGAVMETAPPFSGIAEFMNGRFSYCVRAE--PGRRLEIQDAAAAAAAASPAWRGVNKRIREGVPRV 589
            LFWK+VLR++VH +GMP +RDK +G F+          P +  W+ELR EY  ++  G LYIFR  VF  P   + E   G  VPL GG V+ GPW IT   T     T+   + +D       + GR  AA A+     PF+ + E M+G  SY V     P   L +Q    A A   PAWR V+ RIR G+P V
Sbjct:  395 LFWKEVLRQLVHKMGMPMVRDKTLGMFVRDTLQRDTHVPLKDKWVELRKEYVGFLCGGSLYIFRMGVFLPPNTSYGEKAEGTPVPLDGGLVQVGPWRITTAETE----TKPPQELQD------FERGRPPAANAL-----PFASMDELMDGELSYVVAVPDTPEAALTVQPGLRAKA---PAWRDVDPRIRRGMPLV 573
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BLAST of mRNA_P-wetherbeei_contig9819.1.1 vs. uniprot
Match: D8LRA1_ECTSI (tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA1_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.060e-21
Identity = 78/195 (40.00%), Postives = 99/195 (50.77%), Query Frame = 2 
Query:   17 LFWKDVLREVVHSLGMPAMRDKAIGTFIDHVGGTQDPAP-RACWLELRAEYRVYIEAGVLYIFRPDVF--PREPHSEACAGRQVPL-GGTVRAGPWLITAMATVAAAATRAHHQEEDGADXGAADAGREAAAGAVMETAPPFSGIAEFMNGRFSYCVRAE--PGRRLEIQDAAAAAAAASPAWRGVNKRIREGVP 583
            LFWK+VLR++VH +GMP +RDK +G F+          P +  W+ELR EY  ++  G LYIFR  VF  P   + E   G  VPL GG V+ GPW IT   T          QE  G + G     R  AA A+     PF+ + E M+G  SY V     P   L +Q    A A   PAWR V+ RIR G+P
Sbjct:  260 LFWKEVLRQLVHKMGMPMVRDKTLGMFVRDTLQRDTHVPLKDKWVELRKEYVGFLCGGSLYIFRMGVFLPPNTSYGEKAEGTPVPLDGGLVQVGPWRITTAETETKLP-----QELQGFERG-----RPPAANAL-----PFASMEELMDGELSYVVAVPDTPEAALTVQPGLRAKA---PAWRDVDPRIRRGMP 436
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BLAST of mRNA_P-wetherbeei_contig9819.1.1 vs. uniprot
Match: A0A8J9XCK8_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9XCK8_PHATR)

HSP 1 Score: 63.2 bits (152), Expect = 8.360e-8
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 2 
Query:   20 FWKDVLREVVHSLGMPAMRDKAIGTFIDHVGGTQDPAPRACWLELRAEYRVYIEA-GVLYIFRPDVFPREPHSEACAGRQ-VPLGGT--VRAGPWLI 298
            FWK VLRE +HS+G+    DK++ +F+   G  Q    R  WL+ R +Y VY++  G +Y+F P  FP  P       +  V  GG+  V  GPW I
Sbjct:  156 FWKFVLRETLHSVGLGMFSDKSVASFL---GRVQAETIREGWLQCRKDYAVYLQKNGHVYVFFPKSFPFRPSDAFKIPKDPVDFGGSNAVHVGPWRI 249
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BLAST of mRNA_P-wetherbeei_contig9819.1.1 vs. uniprot
Match: B7G6Z6_PHATC (tRNA(Ile)-lysidine synthetase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G6Z6_PHATC)

HSP 1 Score: 62.0 bits (149), Expect = 6.510e-7
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 2 
Query:   20 FWKDVLREVVHSLGMPAMRDKAIGTFIDHVGGTQDPAPRACWLELRAEYRVYIEA-GVLYIFRPDVFPREPHSEACAGRQVPL----GGTVRAGPWLI 298
            FWK VLRE +HS+G+    DK++ +F+   G  Q    R  WL+ R +Y VY++  G +Y+F P  FP  P S+A    + P+       V  GPW I
Sbjct:  658 FWKFVLRETLHSVGLGMFSDKSVASFL---GRVQAETIREGWLQCRKDYAVYLQKNGHVYVFFPKSFPFRP-SDAFKIPKDPVDFGASNAVHVGPWRI 751
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BLAST of mRNA_P-wetherbeei_contig9819.1.1 vs. uniprot
Match: A0A1E7FFE3_9STRA (tRNA(Ile)-lysidine synthetase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFE3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.650e-6
Identity = 34/101 (33.66%), Postives = 53/101 (52.48%), Query Frame = 2 
Query:    2 RGRPPLFWKDVLREVVHSLGMPAMRDKAIGTFIDHVGGTQDPAPRACWLELRAEYRVYIEA-GVLYIFRPDVFPREPHSEACAGRQVPLGGTVR-AGPWLI 298
            + +P  FWK VLRE +HS+G+    DK++  F+  +   +    +A WL+ R +Y VY+E  G +++F P  FP           QV    TV+  GPW +
Sbjct:  739 KDQPVFFWKVVLREALHSVGLGMFSDKSVTAFLQRIKAKK---LKAAWLQCRKDYGVYLETDGRVFVFYPSSFPWSKKDAYGLDGQVLDFETVKIVGPWKV 836
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BLAST of mRNA_P-wetherbeei_contig9819.1.1 vs. uniprot
Match: A0A7S3GZQ9_9STRA (tRNA(Ile)-lysidine synthetase (Fragment) n=4 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZQ9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.470e-5
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 2 
Query:    2 RGRPPLFWKDVLREVVHSLGMPAMRDKAIGTFIDHVGGTQDPAPR--ACWLELRAEYRVYI-EAGVLYIFRPDVFPREPHSEAC 244
            R +P  FW++ L++++HS+ MP +RD A+G F++ +   Q P+ R  A WLELR     ++ E+G L I R  V  +  H   C
Sbjct:  370 RQQPQCFWREALKQLMHSMNMPMVRDSAVGNFVERL---QKPSARLLAGWLELRKGVHSFLTESGELVILREGVLRK--HLSLC 448
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9819.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L0I6_9PHAE3.000e-2239.59tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus s... [more]
D8LRA1_ECTSI1.060e-2140.00tRNA(Ile)-lysidine synthetase n=1 Tax=Ectocarpus s... [more]
A0A8J9XCK8_PHATR8.360e-838.14Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7G6Z6_PHATC6.510e-737.76tRNA(Ile)-lysidine synthetase n=1 Tax=Phaeodactylu... [more]
A0A1E7FFE3_9STRA1.650e-633.66tRNA(Ile)-lysidine synthetase n=1 Tax=Fragilariops... [more]
A0A7S3GZQ9_9STRA2.470e-536.90tRNA(Ile)-lysidine synthetase (Fragment) n=4 Tax=S... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9819contigP-wetherbeei_contig9819:77..2037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size989
Hectar predicted targeting categoryother localisation
Exons5
Cds size885
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9819.1.1prot_P-wetherbeei_contig9819.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9819 181..2037 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187111.83687-UTR-P-wetherbeei_contig9819:76..1801683187111.83687-UTR-P-wetherbeei_contig9819:76..180Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9819 77..180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187111.847607-CDS-P-wetherbeei_contig9819:180..5571683187111.847607-CDS-P-wetherbeei_contig9819:180..557Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9819 181..557 -
1683187111.8580263-CDS-P-wetherbeei_contig9819:735..8971683187111.8580263-CDS-P-wetherbeei_contig9819:735..897Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9819 736..897 -
1683187111.8682399-CDS-P-wetherbeei_contig9819:1026..11611683187111.8682399-CDS-P-wetherbeei_contig9819:1026..1161Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9819 1027..1161 -
1683187111.878613-CDS-P-wetherbeei_contig9819:1531..16061683187111.878613-CDS-P-wetherbeei_contig9819:1531..1606Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9819 1532..1606 -
1683187111.8885903-CDS-P-wetherbeei_contig9819:1901..20371683187111.8885903-CDS-P-wetherbeei_contig9819:1901..2037Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9819 1902..2037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9819.1.1

>prot_P-wetherbeei_contig9819.1.1 ID=prot_P-wetherbeei_contig9819.1.1|Name=mRNA_P-wetherbeei_contig9819.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=295bp
QGPAASLLERRTAGGGALARHARHARQGHRNLHRPRRRNTGPRATGVLAG
APGGISRVYRGRSPLHLPPRRVPERTALGGVRWPAGAAGRDRPGRPVAHH
RDGHCRRRCHQGAPSGGRRGRRRRRGRRQRGGSGGCDGNGAAVFRHRRIY
ERPLFVLRPCRARASVGNPGRGGGGGGGQSGVAGREQAHPGGRAARRRLA
GGGSRRGEKRRRKGREKPTGHRRSIREPAGRNGGGGGGDGFGGGGQCGSD
GSGVVRILHRRRLRDHFQLRTSIVGRVCPRPQPCIALISKARIR*
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mRNA from alignment at P-wetherbeei_contig9819:77..2037-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9819.1.1 ID=mRNA_P-wetherbeei_contig9819.1.1|Name=mRNA_P-wetherbeei_contig9819.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1961bp|location=Sequence derived from alignment at P-wetherbeei_contig9819:77..2037- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGGCCGGCCGCCTCTCTTCTGGAAAGACGTACTGCGGGAGGTGGTGC
ACTCGCTCGGCATGCCCGCCATGCGCGACAAGGCCATCGGAACCTTCATC
GACCACGTCGGCGGAACACAGGACCCCGCGCCACGGGTAAGCCTGAGAGG
CCTTGGCTCCTCGATTCTGTCTTTCGGTTGTCATCTTCTCAATTCTATCG
ATTCCTTCTGTTCTGTTGGGTATTTGGGTTGTGTCGGGGTTCTCGGGTCG
GTCGGCTTTTTCGGGTCGGTGGGTCTTTTCGGGAGATCTTGAGTTGAGAT
GGTTTCTTGATTTACCTTCGATCAAAAAATGATTGCTATTTCTGATGTGG
GGCTTCGAGCTGGCTCAGGTTTAGTTTTGATGCTGTCTCACTTTAATTTT
CTCTACTTGAACCCTAACTGCTACTTGGCAGGCGTGCTGGCTGGAGCTCC
GGGCGGAATATCGCGTGTATATCGAGGCAGGAGTCCTCTACATCTTCCGC
CCCGACGTAGAGTTTTTTTTTGTTGACTCTCTTTTCTTCTTTGTTTTCCG
TTTCTTGTTGAGACTTACCACGTTGTTTTCTGGGTCTCCTCTTGTCCGGT
TTAGCCAGGCTGCGCACGCATCGCGCCATCTTTCTGCTGTTAAAAACGGC
CTCTCTCCTGCGCCTTCACTGTTAGACGTCTTTGCTGGCGTTGCAGTCTC
GAGTTCCCATTTCTTAGTATGCAACAAGTTTATCGTGCATCTCCGTTCAT
GTACATTGAATTGCCGAATGCGTGGCTTCGCGTTGCATCTATTAATTCAA
CTCTCCAATTGTCCTTGCGCCCTTTCCATCACACCCAATCTCTTTCCCCG
CAACAAAACAAAATGAAAACAAACAGGTGTTCCCGAGAGAACCGCACTCG
GAGGCGTGCGCTGGCCGGCAGGTGCCGCTGGGAGGGACCGTCCGGGCAGG
CCCGTGGCTCATCACCGCGATGGCCACTGTCGCCGCCGCTGCCACCAGGG
CGCACCATCAGGTCAGAGACGGACATATCCCGACGAAGAAGCCGCCTTGG
TAGTGAAAGCGCGAGCGCACGACGTGCGTGTCAGCGATGCATCTGATTTT
TACCCATCTTTTTTTCGTTCAACCGTGCGGCTTGGGACAGGAGGAAGACG
GGGCAGACGACGGCGCCGCGGACGCCGGCAGAGAGGCGGCAGCGGGGGCT
GTGATGGAAACGGCGCCGCCGTTTTCAGGCATCGCCGAATTTATGAACGG
CCGCTTTTCGTACTGCGTCCGTGCCGAGCCCGGGCGTCGGTTGGAAATCC
AGGTGCGTTCCATTCCGCCACTGGCGCCGCCACGGTTGCACCCTTTTCTT
CAAAGGCGGGCTTGGAAGAAAAGGATGAAGGTCATTCTTTACCGGCCGTT
CTTCTCCCGGAATGCATAGCCTGAAGTTTTTACGCGTCCGTGCTGCTTTG
TTCCCTTGGCTATTGCTGGTGGGCATACAGGACGCGGCGGCGGCGGCGGC
GGCGGCCAGTCCGGCGTGGCGGGGCGTGAACAAGCGCATCCGGGAGGGCG
TGCCGCGCGTCGGCGCCTCGCGGGAGGAGGGAGTCGGAGAGGCGAGAAGC
GGAGGAGGAAGGGAAGGGAAAAGCCGACGGGTCACCGCCGCAGCATCAGG
GAGCCGGCCGGGAGAAACGGCGGCGGCGGCGGCGGCGACGGCTTCGGCGG
CGGGGGGCAATGCGGATCTGATGGTTCGGGTGTCGTACGAATTCTCCATC
GCAGACGGTTGAGAGATCATTTTCAGCTCCGGACATCGATTGTCGGTCGC
GTTTGCCCTCGTCCGCAGCCGTGCATCGCTCTTATTTCCAAGGCGCGTAT
CCGTTAATGATTAATGGCGAAGGGACTGGCAGACTGGTAGAGTTTCGGGG
GCGCCAAGAGGAAACGCCTAACACGTCACTCAAACACAAAATTGTACAAA
GCAACAGCAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9819:77..2037-

>mRNA_P-wetherbeei_contig9819.1.1 ID=mRNA_P-wetherbeei_contig9819.1.1|Name=mRNA_P-wetherbeei_contig9819.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=885bp|location=Sequence derived from alignment at P-wetherbeei_contig9819:77..2037- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGGCCGGCCGCCTCTCTTCTGGAAAGACGTACTGCGGGAGGTGGTGC
ACTCGCTCGGCATGCCCGCCATGCGCGACAAGGCCATCGGAACCTTCATC
GACCACGTCGGCGGAACACAGGACCCCGCGCCACGGGCGTGCTGGCTGGA
GCTCCGGGCGGAATATCGCGTGTATATCGAGGCAGGAGTCCTCTACATCT
TCCGCCCCGACGTGTTCCCGAGAGAACCGCACTCGGAGGCGTGCGCTGGC
CGGCAGGTGCCGCTGGGAGGGACCGTCCGGGCAGGCCCGTGGCTCATCAC
CGCGATGGCCACTGTCGCCGCCGCTGCCACCAGGGCGCACCATCAGGAGG
AAGACGGGGCAGACGACGGCGCCGCGGACGCCGGCAGAGAGGCGGCAGCG
GGGGCTGTGATGGAAACGGCGCCGCCGTTTTCAGGCATCGCCGAATTTAT
GAACGGCCGCTTTTCGTACTGCGTCCGTGCCGAGCCCGGGCGTCGGTTGG
AAATCCAGGACGCGGCGGCGGCGGCGGCGGCGGCCAGTCCGGCGTGGCGG
GGCGTGAACAAGCGCATCCGGGAGGGCGTGCCGCGCGTCGGCGCCTCGCG
GGAGGAGGGAGTCGGAGAGGCGAGAAGCGGAGGAGGAAGGGAAGGGAAAA
GCCGACGGGTCACCGCCGCAGCATCAGGGAGCCGGCCGGGAGAAACGGCG
GCGGCGGCGGCGGCGACGGCTTCGGCGGCGGGGGGCAATGCGGATCTGAT
GGTTCGGGTGTCGTACGAATTCTCCATCGCAGACGGTTGAGAGATCATTT
TCAGCTCCGGACATCGATTGTCGGTCGCGTTTGCCCTCGTCCGCAGCCGT
GCATCGCTCTTATTTCCAAGGCGCGTATCCGTTAA
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