mRNA_P-wetherbeei_contig9815.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9815.1.2
Unique NamemRNA_P-wetherbeei_contig9815.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9815.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9815contigP-wetherbeei_contig9815:505..1568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size267
Hectar predicted targeting categoryother localisation
Exons4
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187111.7175694-CDS-P-wetherbeei_contig9815:504..5441683187111.7175694-CDS-P-wetherbeei_contig9815:504..544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9815 505..544 +
1683187111.7313585-CDS-P-wetherbeei_contig9815:779..8271683187111.7313585-CDS-P-wetherbeei_contig9815:779..827Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9815 780..827 +
1683187111.7396832-CDS-P-wetherbeei_contig9815:1181..12461683187111.7396832-CDS-P-wetherbeei_contig9815:1181..1246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9815 1182..1246 +
1683187111.7524052-CDS-P-wetherbeei_contig9815:1454..15681683187111.7524052-CDS-P-wetherbeei_contig9815:1454..1568Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9815 1455..1568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9815.1.2prot_P-wetherbeei_contig9815.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9815 505..1568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9815.1.2

>prot_P-wetherbeei_contig9815.1.2 ID=prot_P-wetherbeei_contig9815.1.2|Name=mRNA_P-wetherbeei_contig9815.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
PVAGPPAVFCGRIGGRGYVRAGRHGKSREEVLFAGAQQILAGTTLRVVKR
ERHDVEHPASTEYTTASLHTLMQASQAETCLQRQPHSN*
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mRNA from alignment at P-wetherbeei_contig9815:505..1568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9815.1.2 ID=mRNA_P-wetherbeei_contig9815.1.2|Name=mRNA_P-wetherbeei_contig9815.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1064bp|location=Sequence derived from alignment at P-wetherbeei_contig9815:505..1568+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGTGGCAGGGCCGCCGGCGGTATTCTGCGGCCGCATTGGTGAGTGGCT
CTGAATAAAATTTGGTGGGCGGTGGCTGTCGGGCAGCGCAATTTACTATT
TACTGCATAGAATGATGACTTCTTTTACTTTCAATTGTTTGTATAGAGAA
GCGGAGGCGGGACGGCACGGGAGGGAGAGTGGAGGAGGGTGGAACGGTGA
TGTCAGACAAAAAACAAACAAATAGGGAACTGACGGGGGGCGCTTTATTG
GCGGCTGTTGACTCCACTGCCTCAGGTGGGCGAGGTTATGTTCGCGCTGG
CCGGCATGGAAAATCAAGAGAAGGTAGGGGGAAGGGTCTGCCCGTGCTTC
CACTTTTACCGCTTCTCAAAACACCGCTCGAAACGCGTTTTCCCATATTC
GGATCTGCATTATTGCATAATGCGTATATCGCAACGCGTGCGCGCCGTGT
GCATTGCCCTCTCTCTCTACCTAGGGCCACTTACCAGCTGCAGCCCGTAA
CCTACAATCCCAATCCTGGCTCCGAACCTGTCCTGCCTTGGCTGCTCCTC
CTGCTCAACAGCCATATTCCTAAGTTTGAGGTTTGGTCCCAAAAATTGTT
CCAACAACCAAAAATTCGGGGTTGTGTGTCGTTTACGCCCTGATGATTCG
ATCGTGACCCGTTTTGGCCGCCACCAGAAGTACTTTTTGCTGGTGCCCAG
CAAATTTTGGCTGGGACCACGTTGCGTGTTGTGAAAAGAGAGGTAATACT
GTAGTGTTTGCAGTTTTCGGTAGTTTTCAAACATTAGAGAGATTATGGGA
ATGTGCTTCGCGGGGCAGTTGCTGACTGATAATGAAAATTGATTATCATA
GGTCGAAACGGTTACTCATCCCCAGCAGCCTACGGTTTTTTTCATGCACC
TACGACTCTTCCCTACCTCCAACGTACTGAATACCATCTTGGCAAAACAG
AGACACGATGTTGAACATCCCGCAAGCACCGAATACACCACAGCATCACT
TCACACGCTCATGCAGGCGTCACAGGCAGAAACTTGTCTGCAGCGGCAAC
CTCACTCGAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9815:505..1568+

>mRNA_P-wetherbeei_contig9815.1.2 ID=mRNA_P-wetherbeei_contig9815.1.2|Name=mRNA_P-wetherbeei_contig9815.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig9815:505..1568+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGTGGCAGGGCCGCCGGCGGTATTCTGCGGCCGCATTGGTGGGCGAGG
TTATGTTCGCGCTGGCCGGCATGGAAAATCAAGAGAAGAAGTACTTTTTG
CTGGTGCCCAGCAAATTTTGGCTGGGACCACGTTGCGTGTTGTGAAAAGA
GAGAGACACGATGTTGAACATCCCGCAAGCACCGAATACACCACAGCATC
ACTTCACACGCTCATGCAGGCGTCACAGGCAGAAACTTGTCTGCAGCGGC
AACCTCACTCGAACTGA
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