mRNA_P-wetherbeei_contig9811.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9811.1.1
Unique NamemRNA_P-wetherbeei_contig9811.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9811.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9811contigP-wetherbeei_contig9811:825..2422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1358
Hectar predicted targeting categoryother localisation
Exons2
Cds size684
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187111.6629467-UTR-P-wetherbeei_contig9811:824..9121683187111.6629467-UTR-P-wetherbeei_contig9811:824..912Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9811 825..912 +
1683187111.6717217-UTR-P-wetherbeei_contig9811:1152..13041683187111.6717217-UTR-P-wetherbeei_contig9811:1152..1304Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9811 1153..1304 +
1683187111.688172-UTR-P-wetherbeei_contig9811:1988..24221683187111.688172-UTR-P-wetherbeei_contig9811:1988..2422Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9811 1989..2422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187111.680215-CDS-P-wetherbeei_contig9811:1304..19881683187111.680215-CDS-P-wetherbeei_contig9811:1304..1988Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9811 1305..1988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9811.1.1prot_P-wetherbeei_contig9811.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9811 1305..1988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9811.1.1

>prot_P-wetherbeei_contig9811.1.1 ID=prot_P-wetherbeei_contig9811.1.1|Name=mRNA_P-wetherbeei_contig9811.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=228bp
MTETSPSVCPFGISLFCLAPSGVDLYFSLCHASLFLSRKAIPYRIRPGAG
AQIYTWTVALDVGNTMVFGPLSVPGCYRIAPVALSTICTTTAHYISALHR
IPPINHCPFSLRITRCSFFAIAFSRAPWNNNTLRDWKRHVPEAGAGRSRA
PMSPSSASGRVRASSATRRRGWHSTASTSPTQCSTMAALATLPARATMPQ
AAGTAAGRGGGGRAMPYRPTHALALHA*
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mRNA from alignment at P-wetherbeei_contig9811:825..2422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9811.1.1 ID=mRNA_P-wetherbeei_contig9811.1.1|Name=mRNA_P-wetherbeei_contig9811.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1598bp|location=Sequence derived from alignment at P-wetherbeei_contig9811:825..2422+ (Phaeothamnion wetherbeei SAG_119_79)
TGTGTTTTTGCACAAGAGACCTGCCTCTGTCTTCATATTCCAGCGGGACC
AGATGCGGTCGTGCGAACGTGCGAACACTGTGGCAAAGGCAAGTGACGTC
GCGCTGCGATACTTGGAAGAACAGATAGTGCGAAACGAAGGGATGCAACG
ACGAGGAGGCAGATCGCCCCTTCAGTTTGTTCGGCAGAACAACGTTCATA
GGCTGCTACTTCCTCGAAATTGTTCATTTCTTGCTTTCACATCTCCTCCA
GCTCAAACTGTTGCACATTTCCGCCCTTTAGCGTCTAGGAGCCGCACTAA
AAGGACCCTTCTATCGACTCCCGCTCAGGTACTGCTCAGCTGCCTGCCAT
TGAGCAGCGGCCGCCGCCGCCACTGCGAGCGCCGGTGGCGACAGTACGCT
TTTCGGCAAATGCCCCTGCCAAAGCCCCAAATGTGTCAAGCAATTACGGA
CATCCGCACGCCCTGGAGCGAGTTACTACGATGACGGAAACAAGTCCATC
TGTTTGCCCTTTTGGAATTAGCTTGTTCTGCCTTGCTCCTTCTGGCGTCG
ATTTATATTTCTCGCTTTGTCATGCGTCTCTCTTCTTGTCGAGAAAAGCA
ATACCTTATCGCATAAGACCTGGCGCTGGGGCACAAATTTACACTTGGAC
TGTGGCACTAGATGTGGGAAACACGATGGTCTTTGGGCCTCTTTCCGTCC
CGGGCTGTTATCGGATTGCGCCCGTGGCTTTGTCAACCATTTGCACTACT
ACTGCTCACTACATAAGTGCGCTCCACCGCATTCCTCCAATCAATCACTG
TCCCTTCTCCCTCCGCATCACCCGCTGCTCCTTTTTTGCAATCGCCTTCT
CACGTGCCCCGTGGAACAACAACACGCTCCGCGATTGGAAGCGACACGTA
CCTGAAGCCGGCGCAGGTCGTAGTCGTGCGCCGATGTCACCTTCTTCCGC
CTCTGGAAGAGTCCGAGCGAGCAGTGCCACCCGGCGGCGTGGATGGCACT
CGACGGCATCGACGTCGCCAACGCAATGCTCTACGATGGCAGCGCTAGCA
ACGCTGCCAGCGAGGGCGACAATGCCCCAAGCTGCAGGCACCGCCGCCGG
TCGTGGCGGAGGCGGACGCGCTATGCCTTATCGCCCAACGCATGCTCTAG
CGCTGCATGCCTGACAGCGTCCAGCGCCAGCGGCTGGAAACCACAGTCAA
GGGCCTGGGGCTCTCGGCACTGACAAGGAAAACGACGGTGGGAGGCGAGA
AGTTCGGCGGCAAGGCCGTCGCCACCCGGGAACTGCTGCCGGAAAGCGCC
GAGCGGAAGGTTCCGGCCGGCACATGCCTGGTCCCAGCGGGCCCAGACCC
GTGCAAGCAGATGCGCGATTCGGTCTACAAGAGGAACGAGGCGGAAGGGT
CCCTAGTGCACTCGTTGTCGGCGCTGGCGGACTGCTAGCTCGCGCGTGGT
GGCGGCGCGGCGACGCGGCGACGCTCGCCGTGGCTGAAAGGGCCGTATGC
TGTCGCGGTGGATCGACGCCGGCCGCCCGCTGTGTTGGGAGGCGCAGCTC
GTCCTCAACTGCCTCTTCTGCCTCTGCGAGTGCCTTCCGCTGGGAGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9811:825..2422+

>mRNA_P-wetherbeei_contig9811.1.1 ID=mRNA_P-wetherbeei_contig9811.1.1|Name=mRNA_P-wetherbeei_contig9811.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig9811:825..2422+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGAAACAAGTCCATCTGTTTGCCCTTTTGGAATTAGCTTGTTCTG
CCTTGCTCCTTCTGGCGTCGATTTATATTTCTCGCTTTGTCATGCGTCTC
TCTTCTTGTCGAGAAAAGCAATACCTTATCGCATAAGACCTGGCGCTGGG
GCACAAATTTACACTTGGACTGTGGCACTAGATGTGGGAAACACGATGGT
CTTTGGGCCTCTTTCCGTCCCGGGCTGTTATCGGATTGCGCCCGTGGCTT
TGTCAACCATTTGCACTACTACTGCTCACTACATAAGTGCGCTCCACCGC
ATTCCTCCAATCAATCACTGTCCCTTCTCCCTCCGCATCACCCGCTGCTC
CTTTTTTGCAATCGCCTTCTCACGTGCCCCGTGGAACAACAACACGCTCC
GCGATTGGAAGCGACACGTACCTGAAGCCGGCGCAGGTCGTAGTCGTGCG
CCGATGTCACCTTCTTCCGCCTCTGGAAGAGTCCGAGCGAGCAGTGCCAC
CCGGCGGCGTGGATGGCACTCGACGGCATCGACGTCGCCAACGCAATGCT
CTACGATGGCAGCGCTAGCAACGCTGCCAGCGAGGGCGACAATGCCCCAA
GCTGCAGGCACCGCCGCCGGTCGTGGCGGAGGCGGACGCGCTATGCCTTA
TCGCCCAACGCATGCTCTAGCGCTGCATGCCTGA
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