mRNA_P-wetherbeei_contig981.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig981.3.1
Unique NamemRNA_P-wetherbeei_contig981.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig981.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig981contigP-wetherbeei_contig981:4412..5227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size818
Hectar predicted targeting categoryother localisation
Exons1
Cds size795
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187111.5610976-CDS-P-wetherbeei_contig981:4411..52061683187111.5610976-CDS-P-wetherbeei_contig981:4411..5206Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig981 4412..5206 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187111.5703259-UTR-P-wetherbeei_contig981:5206..52271683187111.5703259-UTR-P-wetherbeei_contig981:5206..5227Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig981 5207..5227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig981.3.1prot_P-wetherbeei_contig981.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig981 4412..5206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig981.3.1

>prot_P-wetherbeei_contig981.3.1 ID=prot_P-wetherbeei_contig981.3.1|Name=mRNA_P-wetherbeei_contig981.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=265bp
MVLSRARSPAARPAATPSPAGAAAPSPAASAPSPAAATAGARPEVHLGRW
QIVISKSSGKAYYWDGGIRSQYEKPADFDRQQAEAAAAAAPTAAAAGRSP
DLAEAEQRFSRAVAEAAAARAVGGGGGEHGGPGGHENSSGNATGRGGGLR
PWGPAMAYERVQASSVPPASAGPRPVELAAAGGPLSGSKRPVDAATNGDF
GGGNGGAGGDGGAKRKCQREAAAAAVAAPSVAGKRPREDNDVADRCCLDR
PTVGRVPASFGMSPA
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mRNA from alignment at P-wetherbeei_contig981:4412..5227-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig981.3.1 ID=mRNA_P-wetherbeei_contig981.3.1|Name=mRNA_P-wetherbeei_contig981.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=816bp|location=Sequence derived from alignment at P-wetherbeei_contig981:4412..5227- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCACCCGCTGCGGCTGCGATGGTGCTGTCGCGTGCCAGAAGTCCTGC
CGCGCGGCCGGCAGCGACGCCATCCCCGGCGGGTGCGGCGGCACCGTCGC
CGGCAGCATCGGCGCCCTCGCCAGCGGCGGCGACTGCGGGAGCGCGGCCG
GAAGTTCACTTGGGGAGGTGGCAAATTGTCATCAGCAAGAGTTCCGGCAA
GGCGTACTACTGGGACGGCGGGATCCGCTCCCAGTACGAGAAGCCGGCGG
ACTTCGACCGCCAGCAGGCCGAAGCGGCGGCGGCGGCGGCTCCAACGGCT
GCGGCGGCGGGGCGTTCGCCGGACCTGGCCGAAGCGGAGCAACGGTTCAG
CCGCGCGGTCGCCGAGGCGGCGGCTGCCAGAGCGGTCGGCGGCGGCGGCG
GCGAGCATGGCGGCCCAGGCGGCCATGAGAACAGCAGCGGCAACGCCACT
GGCAGAGGTGGAGGGCTCAGGCCATGGGGTCCGGCGATGGCGTATGAGCG
GGTACAGGCCAGCTCCGTCCCGCCGGCGTCCGCAGGGCCCCGCCCGGTGG
AGCTTGCCGCGGCGGGTGGACCGCTCTCCGGCAGCAAGCGGCCGGTCGAT
GCAGCCACCAACGGCGATTTTGGTGGCGGCAACGGCGGCGCTGGTGGCGA
CGGCGGAGCGAAGCGTAAATGCCAGCGGGAAGCGGCGGCCGCGGCAGTGG
CGGCACCATCCGTTGCCGGCAAGCGCCCGCGCGAGGACAATGACGTCGCC
GACCGCTGCTGTCTCGACCGCCCTACTGTTGGCCGTGTGCCGGCGTCATT
CGGCATGTCTCCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig981:4412..5227-

>mRNA_P-wetherbeei_contig981.3.1 ID=mRNA_P-wetherbeei_contig981.3.1|Name=mRNA_P-wetherbeei_contig981.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig981:4412..5227- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTGTCGCGTGCCAGAAGTCCTGCCGCGCGGCCGGCAGCGACGCC
ATCCCCGGCGGGTGCGGCGGCACCGTCGCCGGCAGCATCGGCGCCCTCGC
CAGCGGCGGCGACTGCGGGAGCGCGGCCGGAAGTTCACTTGGGGAGGTGG
CAAATTGTCATCAGCAAGAGTTCCGGCAAGGCGTACTACTGGGACGGCGG
GATCCGCTCCCAGTACGAGAAGCCGGCGGACTTCGACCGCCAGCAGGCCG
AAGCGGCGGCGGCGGCGGCTCCAACGGCTGCGGCGGCGGGGCGTTCGCCG
GACCTGGCCGAAGCGGAGCAACGGTTCAGCCGCGCGGTCGCCGAGGCGGC
GGCTGCCAGAGCGGTCGGCGGCGGCGGCGGCGAGCATGGCGGCCCAGGCG
GCCATGAGAACAGCAGCGGCAACGCCACTGGCAGAGGTGGAGGGCTCAGG
CCATGGGGTCCGGCGATGGCGTATGAGCGGGTACAGGCCAGCTCCGTCCC
GCCGGCGTCCGCAGGGCCCCGCCCGGTGGAGCTTGCCGCGGCGGGTGGAC
CGCTCTCCGGCAGCAAGCGGCCGGTCGATGCAGCCACCAACGGCGATTTT
GGTGGCGGCAACGGCGGCGCTGGTGGCGACGGCGGAGCGAAGCGTAAATG
CCAGCGGGAAGCGGCGGCCGCGGCAGTGGCGGCACCATCCGTTGCCGGCA
AGCGCCCGCGCGAGGACAATGACGTCGCCGACCGCTGCTGTCTCGACCGC
CCTACTGTTGGCCGTGTGCCGGCGTCATTCGGCATGTCTCCCGCC
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