mRNA_P-wetherbeei_contig9809.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9809.1.1
Unique NamemRNA_P-wetherbeei_contig9809.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9809.1.1 vs. uniprot
Match: D7FL55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL55_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.710e-29
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 1
Query:    1 LLLLYGPAVAAFTYCLSFLFSSHTAAQNAILLLNFITGLALMVTSFVLALIDRTRATNAWLKGLYRLFPGFCLGDGLAQLVL 246
            L LLYGPAVA FTYC+SF F S ++AQN +L +NF+TGLALMVTSFVL L++ TR  NA LK +YRLFPGFCLGDGLAQLVL
Sbjct: 1625 LFLLYGPAVAPFTYCISFFFKSASSAQNMVLFINFVTGLALMVTSFVLNLVESTRDINASLKWIYRLFPGFCLGDGLAQLVL 1706          
BLAST of mRNA_P-wetherbeei_contig9809.1.1 vs. uniprot
Match: A0A835ZC34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC34_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.940e-29
Identity = 63/92 (68.48%), Postives = 70/92 (76.09%), Query Frame = 1
Query:   10 LYGPAVAAFTYCLSFLFSSHTAAQNAILLLNFITGLALMVTSFVLALIDRTRATNAWLKGLY-------------RLFPGFCLGDGLAQLVL 246
            LYGPAVA FTYCLSF F SH++AQN +LLLNF+TGLALMVTSFVL+L+D TRATN  L+  Y             RLFPGFCLGDGLAQLVL
Sbjct: 1623 LYGPAVAPFTYCLSFAFDSHSSAQNVVLLLNFLTGLALMVTSFVLSLLDSTRATNLRLRWFYSMXXXXXXXXXXXRLFPGFCLGDGLAQLVL 1714          
BLAST of mRNA_P-wetherbeei_contig9809.1.1 vs. uniprot
Match: A0A7S1UE30_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE30_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.550e-25
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    4 LLLYGPAVAAFTYCLSFLFSSHTAAQNAILLLNFITGLALMVTSFVLALIDRTRATNAWLKGLYRLFPGFCLGDGLAQLVL 246
            LLLYGPA AAFTY LS+ FSSH+ AQN +L  NFITGL LM+TSFVL +I+ T+  N  L+ LYRLFPGFCLGD LAQ+ +
Sbjct:  799 LLLYGPATAAFTYILSYGFSSHSTAQNFVLFFNFITGLCLMITSFVLNIIENTQEVNYSLRFLYRLFPGFCLGDALAQIAV 879          
BLAST of mRNA_P-wetherbeei_contig9809.1.1 vs. uniprot
Match: A0A7S3YL20_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YL20_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 7.740e-25
Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 LLLLYGPAVAAFTYCLSFLFSSHTAAQNAILLLNFITGLALMVTSFVLALIDRTRATNAWLKGLYRLFPGFCLGD 225
            L++ +GPA A+ TYC+SFLF SH+ AQN  L  NF+TGLALM+TSFVL L+D TRA N  LK L+RLFP FCLGD
Sbjct:   88 LIVSFGPAAASLTYCMSFLFDSHSTAQNLTLFFNFLTGLALMITSFVLDLLDSTRAANLALKHLWRLFPPFCLGD 162          
BLAST of mRNA_P-wetherbeei_contig9809.1.1 vs. uniprot
Match: A0A7R9U9S9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9S9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 8.980e-25
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1
Query:    7 LLYGPAVAAFTYCLSFLFSSHTAAQNAILLLNFITGLALMVTSFVLALIDRTRATNAWLKGLYRLFPGFCLGDGLAQLVL 246
            LLYGPA AAFTY LS+ F SH++AQN +L  NFITGL LM+TSFVL L++ T+A N +LK ++R+FP FCLGDGLAQL +
Sbjct:  419 LLYGPASAAFTYMLSYAFKSHSSAQNVVLFFNFITGLCLMITSFVLNLLESTQAINYYLKYVFRIFPIFCLGDGLAQLAV 498          
BLAST of mRNA_P-wetherbeei_contig9809.1.1 vs. uniprot
Match: A0A7S2S251_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S251_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.190e-23
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 LLLLYGPAVAAFTYCLSFLFSSHTAAQNAILLLNFITGLALMVTSFVLALIDRTRATNAWLKGLYRLFPGFCLGDGLAQLVL 246
            L LLYG A+  FTY +SFLF SH+ AQN +L+LNFITGL L++ SFV+++I+ T+ATN  LK LYRLFPG+ LGDGL  L +
Sbjct: 1303 LFLLYGCAIIPFTYLVSFLFESHSTAQNIVLILNFITGLVLLIASFVMSVIESTKATNNTLKYLYRLFPGYTLGDGLLSLTV 1384          
BLAST of mRNA_P-wetherbeei_contig9809.1.1 vs. uniprot
Match: A0A1Y1HQP2_KLENI (ABC transporter A family n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HQP2_KLENI)

HSP 1 Score: 100 bits (250), Expect = 5.200e-23
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 LLLLYGPAVAAFTYCLSFLFSSHTAAQNAILLLNFITGLALMVTSFVLALIDRTRATNAWLKGLYRLFPGFCLGDGLAQLVL 246
            LLL YGPAVAA TYCL+F F+ H AAQNA+LL++  TGL L + SF+++LI  TR T+  LK  +RLFPGFCL DGL+ L L
Sbjct: 1262 LLLAYGPAVAALTYCLTFAFTHHAAAQNAVLLVHLFTGLLLSLASFIMSLIKNTRHTSHTLKAFFRLFPGFCLADGLSSLAL 1343          
BLAST of mRNA_P-wetherbeei_contig9809.1.1 vs. uniprot
Match: A0A7J6H8P5_CANSA (Uncharacterized protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6H8P5_CANSA)

HSP 1 Score: 93.6 bits (231), Expect = 1.920e-22
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   13 YGPAVAAFTYCLSFLFSSHTAAQNAILLLNFITGLALMVTSFVLALIDRTRATNAWLKGLYRLFPGFCLGDGLAQLVL 246
            YG AVA+ TYCLSF FS HT AQN +LL+NF +GL LMV SF++ LI    + N++LK  +RL PGFC  DGLA L L
Sbjct:   52 YGLAVASSTYCLSFFFSDHTMAQNVVLLINFFSGLILMVISFIMGLIKSIVSANSFLKNFFRLSPGFCYADGLASLAL 129          
BLAST of mRNA_P-wetherbeei_contig9809.1.1 vs. uniprot
Match: A0A2P5AGA1_PARAD (ABC transporter A, ABCA n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5AGA1_PARAD)

HSP 1 Score: 99.0 bits (245), Expect = 2.460e-22
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   13 YGPAVAAFTYCLSFLFSSHTAAQNAILLLNFITGLALMVTSFVLALIDRTRATNAWLKGLYRLFPGFCLGDGLAQLVL 246
            YG AVA+ TYCLSF FS HT AQN +LL+NF TGL LMV SF++ LI  T + N++LK  +RL PGFC  DGLA L L
Sbjct: 1275 YGLAVASSTYCLSFFFSDHTMAQNVVLLINFFTGLVLMVISFIMGLIKTTASANSFLKNFFRLSPGFCFADGLASLAL 1352          
BLAST of mRNA_P-wetherbeei_contig9809.1.1 vs. uniprot
Match: A0A097P9N9_HEVBR (ABC transporter family protein n=3 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A097P9N9_HEVBR)

HSP 1 Score: 99.0 bits (245), Expect = 2.460e-22
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   13 YGPAVAAFTYCLSFLFSSHTAAQNAILLLNFITGLALMVTSFVLALIDRTRATNAWLKGLYRLFPGFCLGDGLAQLVL 246
            YG A+A+ TYCL+FLFS HT AQN +LL++F TGL LMV SF++ LI+ TR+ N +LK ++R+ PGFC  DGLA L L
Sbjct: 1271 YGLAIASSTYCLTFLFSDHTMAQNVVLLVHFFTGLVLMVISFIMGLIETTRSANNFLKNIFRISPGFCFADGLASLAL 1348          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9809.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL55_ECTSI1.710e-2973.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZC34_9STRA5.940e-2968.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1UE30_9STRA3.550e-2566.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3YL20_HETAK7.740e-2565.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9U9S9_9STRA8.980e-2565.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2S251_9STRA5.190e-2360.98Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A1Y1HQP2_KLENI5.200e-2360.98ABC transporter A family n=1 Tax=Klebsormidium nit... [more]
A0A7J6H8P5_CANSA1.920e-2258.97Uncharacterized protein n=1 Tax=Cannabis sativa Ta... [more]
A0A2P5AGA1_PARAD2.460e-2261.54ABC transporter A, ABCA n=2 Tax=Cannabaceae TaxID=... [more]
A0A097P9N9_HEVBR2.460e-2258.97ABC transporter family protein n=3 Tax=Hevea brasi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9809contigP-wetherbeei_contig9809:1410..1890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FL55
PFAMsABC2_membrane_3,ABC_tran
Model size246
Max annot lvl2759|Eukaryota
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031090,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0098588,GO:0098805,GO:0099120
Exons2
Evalue2.8e-30
EggNOG OGsCOG1131@1|root,KOG0059@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size246
COG categoryV
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187111.5278137-CDS-P-wetherbeei_contig9809:1409..15351683187111.5278137-CDS-P-wetherbeei_contig9809:1409..1535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9809 1410..1535 +
1683187111.5376477-CDS-P-wetherbeei_contig9809:1770..18901683187111.5376477-CDS-P-wetherbeei_contig9809:1770..1890Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9809 1771..1890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9809.1.1prot_P-wetherbeei_contig9809.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9809 1410..1890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9809.1.1

>prot_P-wetherbeei_contig9809.1.1 ID=prot_P-wetherbeei_contig9809.1.1|Name=mRNA_P-wetherbeei_contig9809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
LLLLYGPAVAAFTYCLSFLFSSHTAAQNAILLLNFITGLALMVTSFVLAL
IDRTRATNAWLKGLYRLFPGFCLGDGLAQLVL
back to top

mRNA from alignment at P-wetherbeei_contig9809:1410..1890+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9809.1.1 ID=mRNA_P-wetherbeei_contig9809.1.1|Name=mRNA_P-wetherbeei_contig9809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=481bp|location=Sequence derived from alignment at P-wetherbeei_contig9809:1410..1890+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGCTGCTATACGGCCCTGCTGTGGCGGCATTCACATACTGCCTCAG CTTTCTGTTTTCGAGCCACACGGCGGCGCAGAACGCGATCCTGCTGCTCA ATTTCATCACAGGGCTCGCGCTTATGGTGAGTTAAGTGGATGAGATACAT GTTTTTGGGGTGCGCGTGCATGAAATCGTTTAGAATTTGGGTCCTGTTTC TAGTGTTGCATGTTGGTGTAACTTGTAAACCTTCCTGGTTTTCGAGGGAA TGCATGTTTTCCTATTCAAAACGGTTTGCTCAGACCTTCCTCGCTTTTTT ATTTTGTTATCGGATTCGGTATCTGACTTCGCCTCTGCCTACCTTCCATA TCTGCCGGCAGGTGACATCGTTCGTGCTAGCGTTGATCGACCGTACGCGC GCCACCAACGCGTGGCTAAAGGGTCTCTATCGTCTCTTTCCGGGCTTCTG CCTCGGAGACGGCCTCGCGCAGCTCGTCCTT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9809:1410..1890+

>mRNA_P-wetherbeei_contig9809.1.1 ID=mRNA_P-wetherbeei_contig9809.1.1|Name=mRNA_P-wetherbeei_contig9809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig9809:1410..1890+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCTGCTGCTATACGGCCCTGCTGTGGCGGCATTCACATACTGCCTCAG
CTTTCTGTTTTCGAGCCACACGGCGGCGCAGAACGCGATCCTGCTGCTCA
ATTTCATCACAGGGCTCGCGCTTATGGTGACATCGTTCGTGCTAGCGTTG
ATCGACCGTACGCGCGCCACCAACGCGTGGCTAAAGGGTCTCTATCGTCT
CTTTCCGGGCTTCTGCCTCGGAGACGGCCTCGCGCAGCTCGTCCTT
back to top