mRNA_P-wetherbeei_contig9808.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9808.1.1
Unique NamemRNA_P-wetherbeei_contig9808.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9808.1.1 vs. uniprot
Match: A0A7S2R3K6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3K6_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.570e-33
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 LAKKLKDMDAKIYGAYWCSHCEHQARHAKREGKEMFGAEAFEKYITYIECSRQGVDNQADLCRAKDVPGYPTWEIKGKLFPGEKTLEEIEEIV 279
            LAK L+ +DA +Y AYWCSHC  Q        K+ FG EAF  YITY+ECS+ G D Q  LC+ K++PGYPTWEIKGKL+PGE++LEE+EEIV
Sbjct:  177 LAKSLRKLDATMYSAYWCSHCYEQ--------KQAFGKEAFTNYITYVECSKDGFDAQNKLCKDKNLPGYPTWEIKGKLYPGEQSLEELEEIV 261          
BLAST of mRNA_P-wetherbeei_contig9808.1.1 vs. uniprot
Match: A0A6H5K243_9PHAE (VKc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K243_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 2.370e-33
Identity = 57/93 (61.29%), Postives = 72/93 (77.42%), Query Frame = 1
Query:    1 LAKKLKDMDAKIYGAYWCSHCEHQARHAKREGKEMFGAEAFEKYITYIECSRQGVDNQADLCRAKDVPGYPTWEIKGKLFPGEKTLEEIEEIV 279
            + KKLK +DAK+YGAYWC+HC +Q        KEM G EA  K + YIECS +GVDNQ D+C+A D+PG+PTW+I GKL+PGE+TLEE+EEIV
Sbjct:  319 IGKKLKSLDAKMYGAYWCTHCFNQ--------KEMLGKEAMSK-VKYIECSNRGVDNQVDMCKAADIPGFPTWDIDGKLYPGEQTLEELEEIV 402          
BLAST of mRNA_P-wetherbeei_contig9808.1.1 vs. uniprot
Match: D7G9E2_ECTSI (Possible vitamin K epoxide reductase, plastid protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E2_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.250e-33
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 1
Query:    1 LAKKLKDMDAKIYGAYWCSHCEHQARHAKREGKEMFGAEAFEKYITYIECSRQGVDNQADLCRAKDVPGYPTWEIKGKLFPGEKTLEEIEEIV 279
            + KKLK +DAK+YGAYWC+HC +Q        KEM G +   K + YIECS +GVDNQ D+C+A D+PG+PTW+I GKL+PGE+TLEE+EEIV
Sbjct:  230 IGKKLKSLDAKMYGAYWCTHCFNQ--------KEMLGKQVMSK-VKYIECSNRGVDNQVDMCKAADIPGFPTWDIDGKLYPGEQTLEELEEIV 313          
BLAST of mRNA_P-wetherbeei_contig9808.1.1 vs. uniprot
Match: M2X8Y0_GALSU (VKc domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X8Y0_GALSU)

HSP 1 Score: 121 bits (303), Expect = 6.420e-31
Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = 1
Query:    1 LAKKLKDMDAKIYGAYWCSHCEHQARHAKREGKEMFGAEAFEKYITYIECSRQGVDNQADLCRAKDVPGYPTWEIKGKLFPGEKTLEEIEEI 276
            LA++LK   A++YGA+WC HC HQ        K+MFG EAFEK I Y+ECS+ G D+Q +LCR KDVPGYPTWEI G+L+PGE+++EE+EE+
Sbjct:  293 LAERLKSKKARMYGAFWCEHCYHQ--------KQMFGQEAFEK-IEYVECSKNGRDSQYNLCREKDVPGYPTWEIDGELYPGEQSVEELEEL 375          
BLAST of mRNA_P-wetherbeei_contig9808.1.1 vs. uniprot
Match: A0A7S4VPD6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPD6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.000e-30
Identity = 50/96 (52.08%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 LAKKLKDMDAKIYGAYWCSHCEHQARHAKREGKEMFGAEAFEKYITYIECSRQGVDNQADLCRAKDVPGYPTWEIKGKLFPGEKTLEEIEEIVASL 288
            LA  L+ ++AK+YGAYWCSHC  Q        K+ FG EA  +Y+ Y+EC R+G+++Q  LC+A D+PGYPTWEI GKL+PGE+ L+E+E+IV  +
Sbjct:  321 LATDLQKLNAKMYGAYWCSHCYEQ--------KQKFGLEAMRQYVPYVECDREGINSQGKLCKAMDIPGYPTWEIDGKLYPGEQELDELEDIVKEI 408          
BLAST of mRNA_P-wetherbeei_contig9808.1.1 vs. uniprot
Match: A0A1Z5JS18_FISSO (VKc domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS18_FISSO)

HSP 1 Score: 117 bits (292), Expect = 1.610e-29
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    1 LAKKLKDMDAKIYGAYWCSHCEHQARHAKREGKEMFGAEAFEKYITYIECSRQGVDNQADLCRAKDVPGYPTWEIKGKLFPGEKTLEEIEEIV 279
            LAKK++ MD + YGA+WCSHC  Q        K+  G EA    I YIECSR G++ Q  LC+ KDVPGYPTWEI GKL+PGEKTL+E+EEIV
Sbjct:  259 LAKKMQTMDTRFYGAFWCSHCFDQ--------KQAMGKEAM-AMIPYIECSRDGLNAQTKLCKEKDVPGYPTWEINGKLYPGEKTLDELEEIV 342          
BLAST of mRNA_P-wetherbeei_contig9808.1.1 vs. uniprot
Match: A0A0G4EVC6_VITBC (VKc domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EVC6_VITBC)

HSP 1 Score: 117 bits (293), Expect = 5.110e-29
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    1 LAKKLKDMDAKIYGAYWCSHCEHQARHAKREGKEMFGAEAFEKYITYIECSRQGVDNQADLCRAKDVPGYPTWEIKGKLFPGEKTLEEIEEI 276
            LAKKL+ M A++YGAYWC HC  Q        K+ FG EAFE YI Y+EC+R+G++++ D C  +DVPGYPTWEI G+L+PGEK+L  +E+I
Sbjct:  313 LAKKLQTMGARMYGAYWCPHCYDQ--------KQTFGKEAFEGYIEYVECAREGLNSERDRCDKRDVPGYPTWEINGELYPGEKSLATLEKI 396          
BLAST of mRNA_P-wetherbeei_contig9808.1.1 vs. uniprot
Match: A0A1E7F3L8_9STRA (VKOR-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3L8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.460e-29
Identity = 52/97 (53.61%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    1 LAKKLKDMDAKIYGAYWCSHCEHQARHAKREGKEMFGAEAFEKY-ITYIECSRQGVDNQADLCRAKDVPGYPTWEIKGKLFPGEKTLEEIEEIVASL 288
            LAK L  MDAK+YGAYWCSHC  Q    +  GK++F  +   K+ I Y+EC++ G ++Q  LC++K+VPGYPTWEIKGKL+PGE+ L+E+E++V S+
Sbjct:  314 LAKTLNTMDAKMYGAYWCSHCFDQK---EVFGKQVFNRDEASKFNIEYVECAKDGSNSQTKLCKSKEVPGYPTWEIKGKLYPGEQELDELEDLVKSI 407          
BLAST of mRNA_P-wetherbeei_contig9808.1.1 vs. uniprot
Match: A0A7S1H4M8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4M8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 8.570e-29
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 LAKKLKDMDAKIYGAYWCSHCEHQARHAKREGKEMFGAEAFEKYITYIECSRQGVDNQADLCRAKDVPGYPTWEIKGKLFPGEKTLEEIEEIVASLK 291
            + K+LK ++A++YGA+WCSHC  Q        K+  G EAF   + YIEC++ GVD+Q+ LC+ + +PGYPTW I G+ FPGE  LEE++EI+  +K
Sbjct:   23 VGKELKALNAQMYGAFWCSHCYDQ--------KQTLGQEAFTSSVAYIECAKDGVDSQSQLCKEQGIPGYPTWVIGGQQFPGESDLEELQEIIQKVK 111          
BLAST of mRNA_P-wetherbeei_contig9808.1.1 vs. uniprot
Match: A0A7S0YBA4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0YBA4_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.120e-28
Identity = 43/97 (44.33%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    1 LAKKLKDMDAKIYGAYWCSHCEHQARHAKREGKEMFGAEAFEKYITYIECSRQGVDNQADLCRAKDVPGYPTWEIKGKLFPGEKTLEEIEEIVASLK 291
            +A+ L+D DAK+YGA+WCSHC  Q +     GK++F     +  + Y+ECS+ G++ Q+ +C+AK+VPGYPTWEI+G L+PGE++++E+E+++  ++
Sbjct:  225 VARSLRDFDAKMYGAHWCSHCYDQKQTL---GKQVFDKSKGKPLVEYVECSKDGINAQSKVCKAKEVPGYPTWEIRGNLYPGEQSIDELEDLIKDIR 318          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9808.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2R3K6_9STRA1.570e-3360.22Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6H5K243_9PHAE2.370e-3361.29VKc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G9E2_ECTSI5.250e-3359.14Possible vitamin K epoxide reductase, plastid prot... [more]
M2X8Y0_GALSU6.420e-3158.70VKc domain-containing protein n=1 Tax=Galdieria su... [more]
A0A7S4VPD6_9STRA2.000e-3052.08Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1Z5JS18_FISSO1.610e-2959.14VKc domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A0G4EVC6_VITBC5.110e-2955.43VKc domain-containing protein n=2 Tax=Vitrella bra... [more]
A0A1E7F3L8_9STRA5.460e-2953.61VKOR-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S1H4M8_9STRA8.570e-2947.42Hypothetical protein (Fragment) n=1 Tax=Thalassion... [more]
A0A7S0YBA4_9STRA4.120e-2844.33Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9808contigP-wetherbeei_contig9808:3..811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G9E2
PFAMsVKOR
Model size294
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003955,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010207,GO:0015979,GO:0016043,GO:0016491,GO:0016651,GO:0016655,GO:0019684,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0065003,GO:0071840
Exons3
Evalue4.24e-31
EggNOG OGsCOG4243@1|root,2QRER@2759|Eukaryota
DescriptionVitamin K epoxide reductase family
Cds size273
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187111.4755921-UTR-P-wetherbeei_contig9808:2..231683187111.4755921-UTR-P-wetherbeei_contig9808:2..23Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9808 3..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187111.4848044-CDS-P-wetherbeei_contig9808:23..981683187111.4848044-CDS-P-wetherbeei_contig9808:23..98Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9808 24..98 +
1683187111.496018-CDS-P-wetherbeei_contig9808:344..4461683187111.496018-CDS-P-wetherbeei_contig9808:344..446Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9808 345..446 +
1683187111.5042646-CDS-P-wetherbeei_contig9808:715..8111683187111.5042646-CDS-P-wetherbeei_contig9808:715..811Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9808 716..811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9808.1.1prot_P-wetherbeei_contig9808.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9808 24..811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9808.1.1

>prot_P-wetherbeei_contig9808.1.1 ID=prot_P-wetherbeei_contig9808.1.1|Name=mRNA_P-wetherbeei_contig9808.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MDAKIYGAYWCSHCEHQARHAKREGKEMFGAEAFEKYITYIECSRQGVDN
QADLCRAKDVPGYPTWEIKGKLFPGEKTLEEIEEIVASLK*
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mRNA from alignment at P-wetherbeei_contig9808:3..811+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9808.1.1 ID=mRNA_P-wetherbeei_contig9808.1.1|Name=mRNA_P-wetherbeei_contig9808.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=809bp|location=Sequence derived from alignment at P-wetherbeei_contig9808:3..811+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGAAGAAGCTGAAGGATATGGACGCCAAGATATACGGTGCTTACTG GTGCTCCCACTGCGAACACCAGGCACGTCATGCGAAACGGGAAGGAGTAG GGTGATATTCGAAAACGTGGGATTTGAAACCGAAGTTTCGGGAAGGCGGC AGCTCTTGCTTACTCGGCGGCGCCTCATTCGTCTTCTCACGCGGCCTGCG TGCATTGCCGTTCTTTCTATGAAATGAATTTTAAGTAGGGGCGTCCCGCC AGGCGGCTCTGCACGTTTTCAGACCCATCCTTAGTCTCTTTTGCCCCTCC CGCCGGTTGCTTCGCTCCTGCGCCCCTGTTGACGTTTCGCAGAAGGAGAT GTTCGGGGCGGAGGCGTTTGAAAAATACATCACTTACATTGAGTGCAGCA GGCAGGGGGTTGACAACCAGGCGGACTTGTGCCGGGCGAAGGACGTGAGT CTATGTGTGCATGGCTACTCATCTTCATGGCCCTTCCATGCGTTTTTTTG GTTAATCACTGGTCACTTCCGCTATTGGGCCTTCGTTTTCCTCGTGTTGT TTGTGTTTTGGTGAGTTTTTCACCTAATTGCTTCATCGCCACAGAGCGCA GTGGGATGCCCGGAGCCCTCATGTGTGCGCGTGTGTTGATGTCTTGCGCC GCGCATCTTTTGTGCGTTCCTTACCATCTCTGGTGCTTCTGCCTCCTCCT CTTGGCGTGACAGGTGCCCGGGTACCCAACATGGGAGATCAAGGGGAAAC TATTCCCGGGGGAAAAAACCTTAGAGGAGATCGAGGAGATCGTTGCCAGC CTGAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9808:3..811+

>mRNA_P-wetherbeei_contig9808.1.1 ID=mRNA_P-wetherbeei_contig9808.1.1|Name=mRNA_P-wetherbeei_contig9808.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig9808:3..811+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGCCAAGATATACGGTGCTTACTGGTGCTCCCACTGCGAACACCA
GGCACGTCATGCGAAACGGGAAGGAAAGGAGATGTTCGGGGCGGAGGCGT
TTGAAAAATACATCACTTACATTGAGTGCAGCAGGCAGGGGGTTGACAAC
CAGGCGGACTTGTGCCGGGCGAAGGACGTGCCCGGGTACCCAACATGGGA
GATCAAGGGGAAACTATTCCCGGGGGAAAAAACCTTAGAGGAGATCGAGG
AGATCGTTGCCAGCCTGAAATAG
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