mRNA_P-wetherbeei_contig98.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig98.5.1
Unique NamemRNA_P-wetherbeei_contig98.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig98.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig98contigP-wetherbeei_contig98:6494..7570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1077
Hectar predicted targeting categoryother localisation
Exons1
Cds size801
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187110.9764836-UTR-P-wetherbeei_contig98:6493..67691683187110.9764836-UTR-P-wetherbeei_contig98:6493..6769Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig98 6494..6769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187110.9859385-CDS-P-wetherbeei_contig98:6769..75701683187110.9859385-CDS-P-wetherbeei_contig98:6769..7570Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig98 6770..7570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig98.5.1prot_P-wetherbeei_contig98.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig98 6770..7570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig98.5.1

>prot_P-wetherbeei_contig98.5.1 ID=prot_P-wetherbeei_contig98.5.1|Name=mRNA_P-wetherbeei_contig98.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
MACILSSKQERELYFEALDEWLNAVDFWERSVLRRALQKWRTSPGQQQKC
ERKENGFALESHSHENSKDSSTPEARRRQENPQWHTRPLRPKDAPLVRAC
FRWISTCCRGRPYAWRRPPAEALSAALSAGMPLYAVRWRVDGRSSSLWPF
GESDKVWPSSGSVVRRRLIGRLALPPCNVPVLLYAHALADGAVALACFRN
WAAPALANRRRLAVLRALRLRRSLRLWRGRASNARSRSDTVAAASIVAAE
RTAHRALLRWHGQARRR
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mRNA from alignment at P-wetherbeei_contig98:6494..7570+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig98.5.1 ID=mRNA_P-wetherbeei_contig98.5.1|Name=mRNA_P-wetherbeei_contig98.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1077bp|location=Sequence derived from alignment at P-wetherbeei_contig98:6494..7570+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCGTTCTTTGCGTCACGTGGCACATGGCTCCTTTTCATCCGTCCCTGG
GTTGCGTCCAGATCAGCACTCCGTATGGGATTTGCCGGTTAGGAAAACGA
TATTTTCCGCCAGCCAGCAATTATTGTGGTCTTTCAATAACTACGGAACA
TGGCATTAACTAGGCCACTTCATAAGGGAAAAAAGGGATATACGCGCGCT
TTCCGCATCCAGCAATTATCATGGCTCTTTCATCACTAAATAGGCATAAC
TGGGCCACTTTATCGCCCAAAAAGGCATGGCTTGCATCCTTTCCTCTAAA
CAGGAGAGGGAGCTCTACTTCGAGGCTTTGGACGAATGGTTGAATGCAGT
CGATTTCTGGGAACGCTCCGTGTTGCGCAGGGCTCTGCAGAAGTGGCGAA
CGTCGCCCGGTCAGCAGCAGAAATGCGAACGCAAGGAGAACGGCTTTGCT
CTCGAGTCGCATAGCCATGAGAACAGCAAAGACAGCAGCACCCCCGAGGC
CCGGCGCCGACAGGAAAATCCGCAGTGGCATACGCGACCTCTGCGCCCCA
AAGATGCGCCGCTCGTCCGCGCCTGCTTTCGCTGGATATCAACGTGCTGC
CGCGGAAGGCCCTATGCCTGGCGACGCCCGCCGGCCGAGGCACTGTCCGC
GGCCCTCTCGGCCGGAATGCCGCTCTACGCCGTGCGCTGGCGCGTCGACG
GCCGCAGCAGCTCGCTCTGGCCGTTCGGAGAAAGCGACAAGGTGTGGCCC
TCTAGTGGCAGCGTCGTGCGCCGCCGCCTCATCGGGCGCCTCGCGCTGCC
GCCCTGCAACGTCCCGGTCCTGCTGTACGCGCACGCCCTTGCCGACGGGG
CGGTCGCTTTGGCGTGTTTCCGGAACTGGGCAGCTCCGGCTCTAGCTAAC
CGTCGCCGATTGGCTGTCTTGAGGGCGCTACGGCTGCGGAGGTCTCTGCG
GCTCTGGCGTGGCCGCGCCAGCAATGCTCGCAGCCGGAGCGACACTGTTG
CAGCTGCCTCCATCGTTGCTGCTGAACGCACAGCGCACCGGGCCTTGCTG
CGATGGCATGGCCAGGCACGCCGACGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig98:6494..7570+

>mRNA_P-wetherbeei_contig98.5.1 ID=mRNA_P-wetherbeei_contig98.5.1|Name=mRNA_P-wetherbeei_contig98.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig98:6494..7570+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTGCATCCTTTCCTCTAAACAGGAGAGGGAGCTCTACTTCGAGGC
TTTGGACGAATGGTTGAATGCAGTCGATTTCTGGGAACGCTCCGTGTTGC
GCAGGGCTCTGCAGAAGTGGCGAACGTCGCCCGGTCAGCAGCAGAAATGC
GAACGCAAGGAGAACGGCTTTGCTCTCGAGTCGCATAGCCATGAGAACAG
CAAAGACAGCAGCACCCCCGAGGCCCGGCGCCGACAGGAAAATCCGCAGT
GGCATACGCGACCTCTGCGCCCCAAAGATGCGCCGCTCGTCCGCGCCTGC
TTTCGCTGGATATCAACGTGCTGCCGCGGAAGGCCCTATGCCTGGCGACG
CCCGCCGGCCGAGGCACTGTCCGCGGCCCTCTCGGCCGGAATGCCGCTCT
ACGCCGTGCGCTGGCGCGTCGACGGCCGCAGCAGCTCGCTCTGGCCGTTC
GGAGAAAGCGACAAGGTGTGGCCCTCTAGTGGCAGCGTCGTGCGCCGCCG
CCTCATCGGGCGCCTCGCGCTGCCGCCCTGCAACGTCCCGGTCCTGCTGT
ACGCGCACGCCCTTGCCGACGGGGCGGTCGCTTTGGCGTGTTTCCGGAAC
TGGGCAGCTCCGGCTCTAGCTAACCGTCGCCGATTGGCTGTCTTGAGGGC
GCTACGGCTGCGGAGGTCTCTGCGGCTCTGGCGTGGCCGCGCCAGCAATG
CTCGCAGCCGGAGCGACACTGTTGCAGCTGCCTCCATCGTTGCTGCTGAA
CGCACAGCGCACCGGGCCTTGCTGCGATGGCATGGCCAGGCACGCCGACG
G
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