mRNA_P-wetherbeei_contig9793.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9793.2.1
Unique NamemRNA_P-wetherbeei_contig9793.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9793.2.1 vs. uniprot
Match: D7FQB3_ECTSI (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB3_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 4.210e-12
Identity = 63/182 (34.62%), Postives = 83/182 (45.60%), Query Frame = 1
Query:   19 RLDDDYCD--DGIDESSTPACSSGGNRQTFRCRETGPLAMEVPASRVWDGICDCCD---------GSDERD----APWGIPPCVATAS-------CGAAIAAAQEKARQRYKTVLEGAQRREAVAAEAAVTVAVWEAAAADLPVDAA-------GLTKLAVQLKVYLHQEERLERQERITLA 477
            +++DDYCD  DG DE+ TPACS  G  + F C +TGPL   +P SR+WD                G  ER     A  G     A A+       C   +  A+  A + Y+ V  G + R+     +   VA W+A      VD          + KL V LKVYL  EER ER+ER+ LA
Sbjct:   38 KVNDDYCDCLDGADETLTPACSHTGQAR-FACTDTGPLNHTIPTSRLWDXXXXXXXXXXXLVERGGVGERSIGAAAAAGXXXSAARATATCDRNGCERVLEDARTTAMEAYRRVEAGLEARKGAEERSERVVAEWQATLNAGEVDEEVQKQELKAVEKLEVLLKVYLQDEERKERRERVQLA 218          
BLAST of mRNA_P-wetherbeei_contig9793.2.1 vs. uniprot
Match: A0A3R7KCK9_9TRYP (Protein kinase C substrate protein n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A3R7KCK9_9TRYP)

HSP 1 Score: 69.7 bits (169), Expect = 1.430e-10
Identity = 40/84 (47.62%), Postives = 48/84 (57.14%), Query Frame = 1
Query:    4 GGAVI---RLDDDYCD--DGIDESSTPACSSGGNRQ------TFRCRETGPLAMEVPASRVWDGICDCCDGSDERDAPWGIPPC 222
            G A I   +++DDYCD  DG DE  T AC++ G R        FRC+  G    EVP +R+ DGICDCCDGSDE     GI  C
Sbjct:   46 GNATIMGYQVNDDYCDCPDGSDEPGTSACTNPGMRVKFPAKWNFRCKNLGFKPKEVPHNRINDGICDCCDGSDEYS---GIAVC 126          
BLAST of mRNA_P-wetherbeei_contig9793.2.1 vs. uniprot
Match: A0A7S0A6U8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A6U8_9DINO)

HSP 1 Score: 67.8 bits (164), Expect = 6.120e-10
Identity = 44/112 (39.29%), Postives = 56/112 (50.00%), Query Frame = 1
Query:   16 IRLDDDYCD---DGIDESSTPACSSGGNRQTFRCRETGPLAMEVPASRVWDGICDCCDGSDERDAPWGIPPCVATASCGAAIAAAQEKARQRYKTVL---EGAQRREAVAAE 333
              ++DDYCD   DG DE  T AC  G     F C   G +   V  + + DG+CDCCDGSDE    W + P  A    GA +A A+  AR+  + +    EG Q   A AAE
Sbjct:   35 FAVNDDYCDCPEDGSDEPGTDACELG----RFYCANAGSVPQLVRTALLNDGVCDCCDGSDE----WALEPPAAKCRAGACVAEAETIARRLARLLAAEAEGEQLGNAAAAE 138          
BLAST of mRNA_P-wetherbeei_contig9793.2.1 vs. uniprot
Match: A0A6H5KIQ9_9PHAE (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ9_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 6.900e-10
Identity = 47/114 (41.23%), Postives = 59/114 (51.75%), Query Frame = 1
Query:   19 RLDDDYCD---DGIDESSTPACSSGGNRQTFRCRETGPLAMEVPASRVWDGICDCCDGSDERDAPWGIPPCVATASCGAAIAAAQEKARQRYKTVLEGAQRREAVAAEAAVTVA 351
            +++D++CD   DG DE  T ACS+G     F C   G  ++ +P+SRV DG+CDCCDGSDE       P  V  ASC  A          R   V +G  RR   A EAAV  A
Sbjct:  102 KINDNFCDCPHDGSDEPGTSACSNG----VFECANRGHWSVRLPSSRVGDGVCDCCDGSDE-------PAGVCKASCEEAAEEWVAGLADRVVKVEQGTARRVGYA-EAAVEAA 203          
BLAST of mRNA_P-wetherbeei_contig9793.2.1 vs. uniprot
Match: A0A7R8HBA4_LEPSM (PRKCSH n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8HBA4_LEPSM)

HSP 1 Score: 65.9 bits (159), Expect = 8.720e-10
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   13 VIRLDDDYCD---DGIDESSTPACSSGGNRQTFRCRETGPLAMEVPASRVWDGICDCCDGSDERD 198
            V +L+DDYCD    G DE ST ACS G     F+C  +    +++P+S V DGICDCCDGSDE D
Sbjct:   92 VAKLNDDYCDCESTGFDEPSTNACSMG----VFQCSGSN---VQIPSSSVNDGICDCCDGSDEYD 149          
BLAST of mRNA_P-wetherbeei_contig9793.2.1 vs. uniprot
Match: A0A0K2VAP2_LEPSM (Glucosidase 2 subunit betalike [Musca domestica] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2VAP2_LEPSM)

HSP 1 Score: 65.9 bits (159), Expect = 1.080e-9
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   13 VIRLDDDYCD---DGIDESSTPACSSGGNRQTFRCRETGPLAMEVPASRVWDGICDCCDGSDERD 198
            V +L+DDYCD    G DE ST ACS G     F+C  +    +++P+S V DGICDCCDGSDE D
Sbjct:  104 VAKLNDDYCDCESTGFDEPSTNACSMG----VFQCSGSN---VQIPSSSVNDGICDCCDGSDEYD 161          
BLAST of mRNA_P-wetherbeei_contig9793.2.1 vs. uniprot
Match: W7TKS8_9STRA (Glucosidase 2 subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKS8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.220e-9
Identity = 56/150 (37.33%), Postives = 70/150 (46.67%), Query Frame = 1
Query:   28 DDYCDD---GIDESSTPACSSGGNRQTFRCRE--TGPLAMEVPASRVWDGICDCCDGSDERDAPWGIPPCVATASCGAAIAAAQEKARQRYKTVLEGAQRREAVAAEAAVTVAVWEAAAADLPVDAAGLTKLAVQLKVYLHQEERLERQE 462
            D+YCDD   G DE  T ACS      TF C    TG   + +PASRV D ICDCCDGSDE  AP   P      +C +        A Q Y+ V  G +RR+A  AEA   +  W+     +    +    L  +L+     EER E  E
Sbjct:   36 DNYCDDLVNGCDEPKTSACSMVKRASTFACDASVTGEPHL-LPASRVGDTICDCCDGSDE--APGTCPN-----TCESLQEEYLNDAFQWYEDVTVGKERRDAAMAEAQAILGGWQVEMNKIEASVSAHRSLLTKLRKLRAIEERKEGWE 177          
BLAST of mRNA_P-wetherbeei_contig9793.2.1 vs. uniprot
Match: Q76C53_9TRYP (Putative type-II membrane or secretory protein A24 n=1 Tax=Trypanosoma brucei TaxID=5691 RepID=Q76C53_9TRYP)

HSP 1 Score: 65.1 bits (157), Expect = 1.310e-9
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    4 GGAVIR---LDDDYCD--DGIDESSTPACSSGGNRQTF------RCRETGPLAMEVPASRVWDGICDCCDGSDE 192
            G  VI+   ++DD+CD  DG DE  T AC++   +  F      RCR  G  + E+P +RV DG+CDCCDGSDE
Sbjct:   50 GSKVIKGDQINDDFCDCPDGSDEPGTSACTNHFTKVKFPDGWKFRCRNIGFKSKEIPHNRVNDGLCDCCDGSDE 123          
BLAST of mRNA_P-wetherbeei_contig9793.2.1 vs. uniprot
Match: A0A1X0NSB3_9TRYP (Glucosidase 2 subunit beta n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NSB3_9TRYP)

HSP 1 Score: 67.8 bits (164), Expect = 1.510e-9
Identity = 37/76 (48.68%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   19 RLDDDYCD--DGIDESSTPACSSGGN------RQTFRCRETGPLAMEVPASRVWDGICDCCDGSDERDAPWGIPPC 222
            +++DDYCD  DG DE  T AC+S  N         FRC+  G    EVP +RV DGICDCCDGSDE     G+  C
Sbjct:   55 QVNDDYCDCPDGSDEPGTSACTSQENIIKFPSDWKFRCKNEGFRLQEVPHNRVNDGICDCCDGSDEYS---GVKDC 127          
BLAST of mRNA_P-wetherbeei_contig9793.2.1 vs. uniprot
Match: A0A2D4BUU8_PYTIN (Glucosidase 2 subunit beta n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUU8_PYTIN)

HSP 1 Score: 67.8 bits (164), Expect = 1.740e-9
Identity = 48/117 (41.03%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  133 EVPASRVWDGICDCCDGSDERDAPWGIPPCVATASCGAAIAAAQEKARQRYKTVLEGAQRREAVAAEAAVTVAVWEAAAADLPV--DAAGLTKLAVQLKVYLHQEERLERQERITLA 477
            ++P S + DGICDCCDGSDE DA  G   C  T  C     A +EKA+QR K V  G Q+R+A A +  V       A +D  +    A L  L  +++V+  QEER ER+ R+  A
Sbjct:  196 KIPTSLLNDGICDCCDGSDEFDAAAGAATCXNT--CAQDAIAFREKAQQRLKEVESGFQKRQA-ALQGVVAAHFDXIAGSDATIAQSLASLEALKTRVEVFKAQEERRERKMRLEAA 309          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9793.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB3_ECTSI4.210e-1234.62Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sili... [more]
A0A3R7KCK9_9TRYP1.430e-1047.62Protein kinase C substrate protein n=1 Tax=Trypano... [more]
A0A7S0A6U8_9DINO6.120e-1039.29Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A6H5KIQ9_9PHAE6.900e-1041.23Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. ... [more]
A0A7R8HBA4_LEPSM8.720e-1052.31PRKCSH n=2 Tax=Lepeophtheirus salmonis TaxID=72036... [more]
A0A0K2VAP2_LEPSM1.080e-952.31Glucosidase 2 subunit betalike [Musca domestica] n... [more]
W7TKS8_9STRA1.220e-937.33Glucosidase 2 subunit beta n=3 Tax=Monodopsidaceae... [more]
Q76C53_9TRYP1.310e-945.95Putative type-II membrane or secretory protein A24... [more]
A0A1X0NSB3_9TRYP1.510e-948.68Glucosidase 2 subunit beta n=1 Tax=Trypanosoma the... [more]
A0A2D4BUU8_PYTIN1.740e-941.03Glucosidase 2 subunit beta n=2 Tax=Pythium insidio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9793contigP-wetherbeei_contig9793:930..2232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQB3
Preferred nameGNPTG
PFAMsPRKCSH-like,PRKCSH_1
Model size687
Max annot lvl2759|Eukaryota
KEGG koko:K04246,ko:K05546,ko:K08288,ko:K10087
KEGG ReactionR05980,R05981
KEGG Pathwayko00510,ko01100,ko01522,ko04141,ko04142,ko04915,map00510,map01100,map01522,map04141,map04142,map04915
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006605,GO:0006622,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0007034,GO:0007041,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016051,GO:0016256,GO:0016310,GO:0017177,GO:0019538,GO:0031090,GO:0031974,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0036211,GO:0042742,GO:0042802,GO:0042803,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046835,GO:0046907,GO:0046983,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0061462,GO:0070013,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0098542,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons3
Evalue1.12e-13
EggNOG OGsKOG2397@1|root,KOG2397@2759|Eukaryota
EC3.2.1.84
DescriptionN-glycan processing
Cds size687
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko04030,ko04091
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187110.691684-CDS-P-wetherbeei_contig9793:929..10211683187110.691684-CDS-P-wetherbeei_contig9793:929..1021Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9793 930..1021 +
1683187110.7050512-CDS-P-wetherbeei_contig9793:1312..16431683187110.7050512-CDS-P-wetherbeei_contig9793:1312..1643Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9793 1313..1643 +
1683187110.7167535-CDS-P-wetherbeei_contig9793:1968..22321683187110.7167535-CDS-P-wetherbeei_contig9793:1968..2232Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9793 1969..2232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9793.2.1prot_P-wetherbeei_contig9793.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9793 930..2232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9793.2.1

>prot_P-wetherbeei_contig9793.2.1 ID=prot_P-wetherbeei_contig9793.2.1|Name=mRNA_P-wetherbeei_contig9793.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=229bp
DGGAVIRLDDDYCDDGIDESSTPACSSGGNRQTFRCRETGPLAMEVPASR
VWDGICDCCDGSDERDAPWGIPPCVATASCGAAIAAAQEKARQRYKTVLE
GAQRREAVAAEAAVTVAVWEAAAADLPVDAAGLTKLAVQLKVYLHQEERL
ERQERITLAAAAAESEEDDTDTGGGGGGDSAVALDAMRVERERAKVRAKR
TRQARNKEQRRARRSGSSGGSGGGGKSGG
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mRNA from alignment at P-wetherbeei_contig9793:930..2232+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9793.2.1 ID=mRNA_P-wetherbeei_contig9793.2.1|Name=mRNA_P-wetherbeei_contig9793.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1303bp|location=Sequence derived from alignment at P-wetherbeei_contig9793:930..2232+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGAGGAGCCGTGATTCGTCTTGACGACGATTACTGCGATGATGGGAT CGATGAGAGCTCAACACCCGCCTGCTCTAGCGGCGGTAACAGGTAAGTTG TCAACTACCTTCTTCTCCCTCCAGCACAACTTGAATTATCGCATTTAGAT CTTATTCTGGAAAGATGTACTAATATTGCATCACTTAACCGTTTTGCTTT GTTCCAGCGTTTTCGACGCCTGCCACGCAGCTGTGCCCCCACGATGCTTT CAATGCATTCACAGTGCATACGTCTGACATATCGTGTCTTCTTTAAAGAG TCTTCGAACCACGCTCTTGAAAAGACGCCCTCCAAGGTAGCTTCCCCACG ACAATATAACACCATCGTCTGCATTTTCGGCAGGCAAACGTTCCGGTGTC GAGAGACAGGCCCGCTCGCCATGGAAGTTCCAGCCTCCCGAGTGTGGGAC GGCATCTGCGATTGCTGTGACGGTAGCGACGAACGGGATGCACCCTGGGG CATACCTCCGTGCGTCGCCACCGCCAGCTGCGGCGCCGCCATAGCAGCCG CTCAGGAAAAGGCGCGGCAGCGCTACAAGACGGTGCTGGAAGGAGCGCAG CGGCGCGAGGCGGTGGCAGCGGAGGCGGCGGTGACAGTGGCAGTGTGGGA GGCAGCGGCAGCTGACTTGCCGGTCGACGCGGCGGGGCTTACGAAGCTCG CCGTTCAGCTGAAGGTAAGAAGCAGTACATGTTCGACTTTGCCAAGGCTA TCGCAGGATCTGCTTCTGTGAAAGCACGAAGCGTCGTAAGAGGGCCCTTG AGCTATAGCACTATATGAAAGGGGAGTTCTTGTCTCCCCTTTAAGTATGC GGTCCTCGAAAGTGCCTACGTCACCTTTTCCCCCCGTTTTCGCGCTACGC TTCTGTACGCGGACCATCGATTTTCATCCTTCGATCCCTGGTTATGGTTG TGCCGATTATCGCTCCACCTCCCTTTTTTAAATCGCTCCACGTCTACGTC CGTTCTTCTTTTCTTTTTTCCCTGTTCTTACATGCTCAGGTATACTTGCA CCAGGAGGAGCGGTTAGAGCGGCAGGAGCGCATCACCCTCGCGGCAGCTG CAGCGGAATCCGAGGAAGACGACACCGACACTGGCGGCGGCGGCGGCGGC GACAGCGCTGTTGCCCTTGACGCGATGCGGGTTGAGCGGGAGCGCGCTAA GGTTCGCGCCAAGAGAACCAGGCAGGCTCGAAACAAGGAGCAGCGAAGGG CGCGCCGAAGCGGCAGCAGTGGCGGCAGCGGCGGCGGTGGCAAAAGCGGC GGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9793:930..2232+

>mRNA_P-wetherbeei_contig9793.2.1 ID=mRNA_P-wetherbeei_contig9793.2.1|Name=mRNA_P-wetherbeei_contig9793.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig9793:930..2232+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGAGGAGCCGTGATTCGTCTTGACGACGATTACTGCGATGATGGGAT
CGATGAGAGCTCAACACCCGCCTGCTCTAGCGGCGGTAACAGGCAAACGT
TCCGGTGTCGAGAGACAGGCCCGCTCGCCATGGAAGTTCCAGCCTCCCGA
GTGTGGGACGGCATCTGCGATTGCTGTGACGGTAGCGACGAACGGGATGC
ACCCTGGGGCATACCTCCGTGCGTCGCCACCGCCAGCTGCGGCGCCGCCA
TAGCAGCCGCTCAGGAAAAGGCGCGGCAGCGCTACAAGACGGTGCTGGAA
GGAGCGCAGCGGCGCGAGGCGGTGGCAGCGGAGGCGGCGGTGACAGTGGC
AGTGTGGGAGGCAGCGGCAGCTGACTTGCCGGTCGACGCGGCGGGGCTTA
CGAAGCTCGCCGTTCAGCTGAAGGTATACTTGCACCAGGAGGAGCGGTTA
GAGCGGCAGGAGCGCATCACCCTCGCGGCAGCTGCAGCGGAATCCGAGGA
AGACGACACCGACACTGGCGGCGGCGGCGGCGGCGACAGCGCTGTTGCCC
TTGACGCGATGCGGGTTGAGCGGGAGCGCGCTAAGGTTCGCGCCAAGAGA
ACCAGGCAGGCTCGAAACAAGGAGCAGCGAAGGGCGCGCCGAAGCGGCAG
CAGTGGCGGCAGCGGCGGCGGTGGCAAAAGCGGCGGC
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