mRNA_P-wetherbeei_contig9790.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9790.1.1
Unique NamemRNA_P-wetherbeei_contig9790.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9790.1.1 vs. uniprot
Match: A0A835ZH90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH90_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.270e-48
Identity = 74/137 (54.01%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    4 RQMGDYDLEFVTSIRNGDMQTLARLQREGRSMNACNRFGESVLHLAARRGCLEVMRAML--AGGASVAVSDDYGRTPLHDACWTSRPRFDVVQLILDCDVNLLRVVDSRGVPPLGYIKRDLWAAWAAFLDEVQDRYW 408
            +Q+ DY ++ V ++R GD+ TL  +   G SMNACN+F ESV+H+AAR G  EVM  M+   G  S+A+SDDYGRTPLHDACWTS P FD+V  ILD +V +L V D RG  PL Y+K++LW AW  F+D ++D+YW
Sbjct:   36 KQVEDYSIDLVNAVRAGDLDTLREMHAAGCSMNACNKFAESVVHMAARIGAREVMEFMIECTGVESLAISDDYGRTPLHDACWTSEPFFDMVTFILDHEVEMLLVKDKRGFTPLLYVKKELWGAWHTFIDAIKDKYW 172          
BLAST of mRNA_P-wetherbeei_contig9790.1.1 vs. uniprot
Match: A0A7S2DD81_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DD81_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.860e-45
Identity = 65/135 (48.15%), Postives = 103/135 (76.30%), Query Frame = 1
Query:    4 RQMGDYDLEFVTSIRNGDMQTLARLQREGRSMNACNRFGESVLHLAARRGCLEVMRAMLAGGASVAVSDDYGRTPLHDACWTSRPRFDVVQLILDCDVNLLRVVDSRGVPPLGYIKRDLWAAWAAFLDEVQDRYW 408
            +Q+ DYD++FV ++R  D++T++++   G  +NACN+FGES++H+A RRG  +V+  +++ GA++++SDDYGRTP+HDACW + P FDVV L+L+ D+ LLRV+D RG  PL Y++ + +A W AFLD  +D +W
Sbjct:  165 KQVHDYDMDFVAAVRASDVKTISKMLDRGHHVNACNKFGESIIHIACRRGNFKVLEQLVSHGATLSISDDYGRTPMHDACWNAEPCFDVVALLLNRDLELLRVLDKRGATPLSYVRPEHYAIWCAFLDYQKDVWW 299          
BLAST of mRNA_P-wetherbeei_contig9790.1.1 vs. uniprot
Match: A0A836CA41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA41_9STRA)

HSP 1 Score: 150 bits (379), Expect = 4.020e-44
Identity = 67/135 (49.63%), Postives = 88/135 (65.19%), Query Frame = 1
Query:   10 MGDYDLEFVTSIRNGDMQTLARLQREGRSMNACNRFGESVLHLAARRGCLEVMRAML--AGGASVAVSDDYGRTPLHDACWTSRPRFDVVQLILDCDVNLLRVVDSRGVPPLGYIKRDLWAAWAAFLDEVQDRYW 408
            M DY +  + ++R  D+  L  L  EG  MNACN+F ES++H+A R G   VM  ++   G   + + DDYGRTPLHDACW + P FD+V  ILD D ++L VVD RG  PL Y+KRD W AW AF+D V+D+YW
Sbjct:    1 MHDYTMATINAVRQADLDALRMLHAEGHGMNACNKFAESLVHMAGRSGNCAVMEFLIDCTGPEGLTICDDYGRTPLHDACWATEPCFDLVSFILDHDSSMLMVVDRRGYTPLSYVKRDQWGAWHAFIDAVKDKYW 135          
BLAST of mRNA_P-wetherbeei_contig9790.1.1 vs. uniprot
Match: A0A835ZG28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG28_9STRA)

HSP 1 Score: 147 bits (371), Expect = 6.400e-43
Identity = 69/125 (55.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:   37 TSIRNGDMQTLARL-QREGRSMNACNRFGESVLHLAARRGCLEVMRAMLAGGASVAVSDDYGRTPLHDACWTSRPRFDVVQLILDCDVNLLRVVDSRGVPPLGYIKRDLWAAWAAFLDEVQDRYW 408
            T++RNG +Q L RL + EGR+++ACN+FGES+ HLA R+G  +V+  +L  G S+   DD GR P HD CW SRPR+D+VQL L+ D  LL   D+RG  PL Y+KR  WAAW AFLD V+DRYW
Sbjct:    3 TAVRNGSVQELLRLVEEEGRTLSACNKFGESLAHLACRKGSADVVATILRHGGSLTRCDDLGRVPAHDTCWESRPRWDIVQLHLEADAALLLTRDARGWTPLRYVKRANWAAWRAFLDAVKDRYW 127          
BLAST of mRNA_P-wetherbeei_contig9790.1.1 vs. uniprot
Match: W7TFS2_9STRA (Ankyrin repeat-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFS2_9STRA)

HSP 1 Score: 153 bits (387), Expect = 4.320e-42
Identity = 67/135 (49.63%), Postives = 91/135 (67.41%), Query Frame = 1
Query:    4 RQMGDYDLEFVTSIRNGDMQTLARLQREGRSMNACNRFGESVLHLAARRGCLEVMRAMLAGGASVAVSDDYGRTPLHDACWTSRPRFDVVQLILDCDVNLLRVVDSRGVPPLGYIKRDLWAAWAAFLDEVQDRYW 408
            +Q+ DYD+  VT++R GD+ +L  +   GR M+ACNRFGES++H++ RRG  E +R +L  G  V + DD GRTPLHDACW   P FD V  I+D D +L+RVVD RG  PL YI+R+ W  W  F D  +++YW
Sbjct:  219 KQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYW 353          
BLAST of mRNA_P-wetherbeei_contig9790.1.1 vs. uniprot
Match: A0A6H5JNI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI0_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 6.090e-41
Identity = 66/135 (48.89%), Postives = 89/135 (65.93%), Query Frame = 1
Query:    4 RQMGDYDLEFVTSIRNGDMQTLARLQREGRSMNACNRFGESVLHLAARRGCLEVMRAMLAGGASVAVSDDYGRTPLHDACWTSRPRFDVVQLILDCDVNLLRVVDSRGVPPLGYIKRDLWAAWAAFLDEVQDRYW 408
            +Q+ DY +  V ++R  DM  L  L  +G  M A NRFGES++HLA RRG   V+R +L+ G S+ + DDYG+TPLHDA WT+ PRF++V ++L+ D  LLR  D RG  PL Y K + WA+W  FLD V+D  W
Sbjct:  130 KQLDDYQVPLVEAVRRWDMGALEALAADGVDMGASNRFGESIVHLATRRGSTPVLRFLLSHGGSLRICDDYGKTPLHDAFWTAEPRFELVAMMLEMDWGLLRATDVRGATPLRYAKNEHWASWCEFLDRVKDHLW 264          
BLAST of mRNA_P-wetherbeei_contig9790.1.1 vs. uniprot
Match: A0A7S1E3F1_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E3F1_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.320e-40
Identity = 62/136 (45.59%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 PRQMGDYDLEFVTSIRNGDMQTLARLQREGRSMNACNRFGESVLHLAARRGCLEVMRAMLAGGASVAVSDDYGRTPLHDACWTSRPRFDVVQLILDCDVNLLRVVDSRGVPPLGYIKRDLWAAWAAFLDEVQDRYW 408
            P Q   Y +  V ++R  + + L +L + G S N CN FGESV+H+  RRG  ++++ +   G S+ V+DD+GRTPLHDACWT+ P F+ V +ILD D+ LL VVD RG  PL Y+KRD W  W A+     ++YW
Sbjct:   23 PLQKASYGVRIVQAVRQSNAELLEKLLKCGLSPNPCNAFGESVVHMVCRRGDFKLLKVLKDAGCSLQVTDDFGRTPLHDACWTAEPNFETVDMILDTDLRLLNVVDCRGSSPLNYVKRDHWGKWIAYFQSKVEQYW 158          
BLAST of mRNA_P-wetherbeei_contig9790.1.1 vs. uniprot
Match: A0A7S2RMJ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMJ8_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.810e-39
Identity = 63/136 (46.32%), Postives = 93/136 (68.38%), Query Frame = 1
Query:    1 PRQMGDYDLEFVTSIRNGDMQTLARLQREGRSMNACNRFGESVLHLAARRGCLEVMRAMLAGGASVAVSDDYGRTPLHDACWTSRPRFDVVQLILDCDVNLLRVVDSRGVPPLGYIKRDLWAAWAAFLDEVQDRYW 408
            P+Q+ DYDL FV +IR  +   +     EGRSMNACN++GESV+H+A RRG  +++  M+  G  + ++DDYGRTPLHDACWT  P  DVV  +L+ ++ LL ++D RG  PL Y++R+ +  W +F D ++D +W
Sbjct:  314 PKQIQDYDLAFVDAIRTSNYAAIQSFYDEGRSMNACNKYGESVMHMACRRGDGKLVSFMVELGGLLEITDDYGRTPLHDACWTPEPCLDVVMFLLNKNLRLLHLIDKRGFSPLAYVRREHYDVWTSFFDSMKDTWW 449          
BLAST of mRNA_P-wetherbeei_contig9790.1.1 vs. uniprot
Match: A0A7R9ZHX0_9STRA (Hypothetical protein n=6 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHX0_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.810e-38
Identity = 66/136 (48.53%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    1 PRQMGDYDLEFVTSIRNGDMQTLARLQREGRSMNACNRFGESVLHLAARRGCLEVMRAMLAGGASVAVSDDYGRTPLHDACWTSRPRFDVVQLILDCDVNLLRVVDSRGVPPLGYIKRDLWAAWAAFLDEVQDRYW 408
            P Q   Y L  V ++R+ D  TL+ +   G S N CN FGES++H+  RRG   ++R ML  GA++ VSDD+GRTPLHDACWT+ P F+ V LIL+ DV LLR++D RG  PL Y K++ W+ W  +L+  +D YW
Sbjct:  425 PYQKASYGLALVRAVRSSDGPTLSSMLASGLSRNPCNAFGESLVHMVCRRGDHGLLRVMLDRGATLQVSDDFGRTPLHDACWTAEPSFECVDLILERDVRLLRILDCRGSSPLSYAKKEHWSEWIEYLERKKDTYW 560          
BLAST of mRNA_P-wetherbeei_contig9790.1.1 vs. uniprot
Match: A0A6U1TFH5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1TFH5_TRICV)

HSP 1 Score: 142 bits (357), Expect = 2.920e-38
Identity = 65/131 (49.62%), Postives = 90/131 (68.70%), Query Frame = 1
Query:    1 PRQMGDYDLEFVTSIRNGDMQTLARLQREGRSMNACNRFGESVLHLAARRGCLEVMRAMLA-GGASVAVSDDYGRTPLHDACWTSRPRFDVVQLILDCDVNLLRVVDSRGVPPLGYIKRDLWAAWAAFLDE 390
            P Q+  YD E   ++RN D+ +L  + R G+ +   NRFGES++H+A RRG + V+R +L   G SV V DD+GRTPLHDACWT  P FD+V+++++ D +LL V D RG  PLGY++RD W AW  FL+E
Sbjct:  222 PEQIDAYDNEVTAAVRNEDVDSLRSMLRRGKPLQCSNRFGESIVHMACRRGSVPVVRFLLREAGVSVRVRDDFGRTPLHDACWTRDPAFDLVEMLVERDPDLLLVSDRRGHTPLGYVRRDDWGAWVKFLEE 352          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9790.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZH90_9STRA1.270e-4854.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2DD81_9STRA1.860e-4548.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CA41_9STRA4.020e-4449.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZG28_9STRA6.400e-4355.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TFS2_9STRA4.320e-4249.63Ankyrin repeat-containing protein n=3 Tax=Monodops... [more]
A0A6H5JNI0_9PHAE6.090e-4148.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1E3F1_9STRA2.320e-4045.59Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A7S2RMJ8_9STRA2.810e-3946.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9ZHX0_9STRA2.810e-3848.53Hypothetical protein n=6 Tax=Pseudictyota dubia Ta... [more]
A0A6U1TFH5_TRICV2.920e-3849.62Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9790contigP-wetherbeei_contig9790:1478..2134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FYR4
PFAMsAnk_2
Model size426
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.57e-38
EggNOG OGs2C0FJ@1|root,2S48R@2759|Eukaryota
Descriptionankyrin repeats
Cds size417
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187110.549065-CDS-P-wetherbeei_contig9790:1477..16331683187110.549065-CDS-P-wetherbeei_contig9790:1477..1633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9790 1478..1633 -
1683187110.5613954-CDS-P-wetherbeei_contig9790:1864..21251683187110.5613954-CDS-P-wetherbeei_contig9790:1864..2125Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9790 1865..2125 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187110.5713758-UTR-P-wetherbeei_contig9790:2125..21341683187110.5713758-UTR-P-wetherbeei_contig9790:2125..2134Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9790 2126..2134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9790.1.1prot_P-wetherbeei_contig9790.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9790 1478..2125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9790.1.1

>prot_P-wetherbeei_contig9790.1.1 ID=prot_P-wetherbeei_contig9790.1.1|Name=mRNA_P-wetherbeei_contig9790.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MGDYDLEFVTSIRNGDMQTLARLQREGRSMNACNRFGESVLHLAARRGCL
EVMRAMLAGGASVAVSDDYGRTPLHDACWTSRPRFDVVQLILDCDVNLLR
VVDSRGVPPLGYIKRDLWAAWAAFLDEVQDRYWGGGPDG
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mRNA from alignment at P-wetherbeei_contig9790:1478..2134-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9790.1.1 ID=mRNA_P-wetherbeei_contig9790.1.1|Name=mRNA_P-wetherbeei_contig9790.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=657bp|location=Sequence derived from alignment at P-wetherbeei_contig9790:1478..2134- (Phaeothamnion wetherbeei SAG_119_79)
CCCCGTCAGATGGGCGACTACGACCTTGAGTTCGTGACGTCGATCCGCAA CGGTGACATGCAGACGCTGGCGCGGCTGCAGCGCGAAGGCCGCAGCATGA ACGCCTGCAACCGCTTTGGCGAGAGCGTGCTGCACCTGGCTGCACGGCGC GGCTGCCTCGAGGTGATGCGGGCCATGCTGGCGGGTGGCGCCAGCGTCGC TGTCAGCGACGACTATGGGCGCACGCCGCTGCACGACGCCTGCTGGACCT CGCGCCCGCGGTTCGACGTGGTGAGTCAGTCAGAAAGTCTGGTTACGGAA AGTTTGCTGGTTTGCTTCTAGGCGAGTCGCTTCTTTTGTTCGATGTGGTC TAGATGAGCAACGAACGGAGCGGATTTCCCTTTATCGTAGCTTTCTAGCG CAGCCTCATCTGCCAGTGGCTTCTCTCGATTTCTCTTCGTTTGGTTATCC GTGTGACGTTCCCTTGTGCTGCTTCCCGTCTGATACCGTTTTAAAAAACA GGTGCAGCTAATCCTCGACTGCGACGTCAACCTGCTGCGCGTGGTGGACT CGCGCGGTGTCCCGCCGCTCGGCTACATTAAGCGTGATCTCTGGGCAGCT TGGGCCGCCTTTTTGGACGAAGTTCAAGACCGCTACTGGGGCGGCGGCCC CGACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9790:1478..2134-

>mRNA_P-wetherbeei_contig9790.1.1 ID=mRNA_P-wetherbeei_contig9790.1.1|Name=mRNA_P-wetherbeei_contig9790.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig9790:1478..2134- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGACTACGACCTTGAGTTCGTGACGTCGATCCGCAACGGTGACAT
GCAGACGCTGGCGCGGCTGCAGCGCGAAGGCCGCAGCATGAACGCCTGCA
ACCGCTTTGGCGAGAGCGTGCTGCACCTGGCTGCACGGCGCGGCTGCCTC
GAGGTGATGCGGGCCATGCTGGCGGGTGGCGCCAGCGTCGCTGTCAGCGA
CGACTATGGGCGCACGCCGCTGCACGACGCCTGCTGGACCTCGCGCCCGC
GGTTCGACGTGGTGCAGCTAATCCTCGACTGCGACGTCAACCTGCTGCGC
GTGGTGGACTCGCGCGGTGTCCCGCCGCTCGGCTACATTAAGCGTGATCT
CTGGGCAGCTTGGGCCGCCTTTTTGGACGAAGTTCAAGACCGCTACTGGG
GCGGCGGCCCCGACGGC
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