mRNA_P-wetherbeei_contig978.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig978.1.1
Unique NamemRNA_P-wetherbeei_contig978.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig978.1.1 vs. uniprot
Match: D7G5J1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5J1_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 6.280e-73
Identity = 95/143 (66.43%), Postives = 112/143 (78.32%), Query Frame = 1
Query:   52 VDPKNARYPYCVVWSPLPLITWFLPFIGHMGIADSSGVIHDFAGSYMIGEDHMAFGAATRYVQLHPARCSADSWDEAVAKADDVYRKRIHNICCDNCHSHVALALNRMGYGGSSRWDMAKLCAWLFFRGRFVSVGGFLRQWVP 480
            +D   +RYPYC+VW+PLPLITWF+P IGHMGIADS GVI+DFAG Y IGEDHMAFG  TRY+ L P RC  + WDE+VA + + Y KR+HN+CCDNCHSHVALAL RM Y G   W+M  LC W+FF GR+VSV GFL QW+P
Sbjct:   31 IDKARSRYPYCIVWTPLPLITWFIPLIGHMGIADSRGVIYDFAGPYTIGEDHMAFGRPTRYLPLDPGRCKGEQWDESVAHSCETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNMVSLCLWIFFAGRYVSVSGFLAQWLP 173          
BLAST of mRNA_P-wetherbeei_contig978.1.1 vs. uniprot
Match: D0NEB0_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NEB0_PHYIT)

HSP 1 Score: 212 bits (539), Expect = 2.740e-67
Identity = 90/158 (56.96%), Postives = 113/158 (71.52%), Query Frame = 1
Query:   22 DTMSSMEPESVDPKNARYPYCVVWSPLPLITWFLPFIGHMGIADSSGVIHDFAGSYMIGEDHMAFGAATRYVQLHPARCSADSWDEAVAKADDVYRKRIHNICCDNCHSHVALALNRMGYGGSSRWDMAKLCAWLFFRGRFVSVGGFLRQWVPIVVIL 495
            DT   ++    DP   R+PYC+VWSP+P++TWFLPFIGHMG+ADS GVI DFAG Y IG D  AFG+ATRY+Q   A   AD WDEAV     +Y KR+HN+CCDNCHSHVA+ L    Y G  RW+M +LC W+FFRG++VSV GF++ W+P   +L
Sbjct:   19 DTALKIDDGEFDPAVHRFPYCIVWSPIPVLTWFLPFIGHMGLADSKGVIFDFAGPYTIGRDDFAFGSATRYLQCAVAPQDADKWDEAVTAGCKIYEKRMHNLCCDNCHSHVAVCLEHANYAGRKRWNMVELCFWMFFRGKYVSVAGFIKSWLPFAFVL 176          
BLAST of mRNA_P-wetherbeei_contig978.1.1 vs. uniprot
Match: V9F8B3_PHYPR (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9F8B3_PHYPR)

HSP 1 Score: 211 bits (537), Expect = 9.910e-67
Identity = 87/148 (58.78%), Postives = 112/148 (75.68%), Query Frame = 1
Query:   52 VDPKNARYPYCVVWSPLPLITWFLPFIGHMGIADSSGVIHDFAGSYMIGEDHMAFGAATRYVQLHPARCSADSWDEAVAKADDVYRKRIHNICCDNCHSHVALALNRMGYGGSSRWDMAKLCAWLFFRGRFVSVGGFLRQWVPIVVIL 495
            VDP   R+P+C+VWSP+P++TWFLPFIGHMG+ADS G+I DFAG Y IG D  AFG+ATRY+Q + A   AD WDEAVA   ++Y KR+HN+CCDNCHSHVA+ L    Y G  RW+M +LC W+FFRG++VSV  F++ W+P   +L
Sbjct:   47 VDPAVHRFPFCIVWSPIPILTWFLPFIGHMGLADSKGIIFDFAGPYTIGRDDFAFGSATRYIQCNVAPEDADKWDEAVAAGCNIYEKRMHNLCCDNCHSHVAVCLEHANYAGLKRWNMVELCFWMFFRGKYVSVAAFIKSWLPFAFVL 194          
BLAST of mRNA_P-wetherbeei_contig978.1.1 vs. uniprot
Match: A0A329T2L8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T2L8_9STRA)

HSP 1 Score: 208 bits (530), Expect = 1.150e-65
Identity = 87/148 (58.78%), Postives = 110/148 (74.32%), Query Frame = 1
Query:   52 VDPKNARYPYCVVWSPLPLITWFLPFIGHMGIADSSGVIHDFAGSYMIGEDHMAFGAATRYVQLHPARCSADSWDEAVAKADDVYRKRIHNICCDNCHSHVALALNRMGYGGSSRWDMAKLCAWLFFRGRFVSVGGFLRQWVPIVVIL 495
            VDP   R+PYC+VWSP+P++TWFLPFIGHMG+ADS G+I DFAG Y IG D  AFG+ATRY+Q       A+ WDEAVA    +Y KR+HN+CCDNCHSHVA+ L    Y G  RW+M +LC W+FFRG++VSV GF++ W+P   +L
Sbjct:   47 VDPAVHRFPYCIVWSPIPILTWFLPFIGHMGLADSKGIIFDFAGPYTIGRDDFAFGSATRYLQCTIPPEEAEKWDEAVAAGCRIYEKRMHNLCCDNCHSHVAVCLEHANYAGRKRWNMVQLCFWMFFRGKYVSVAGFIKSWLPFAFVL 194          
BLAST of mRNA_P-wetherbeei_contig978.1.1 vs. uniprot
Match: A0A2P4X3X7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X3X7_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.460e-64
Identity = 90/165 (54.55%), Postives = 115/165 (69.70%), Query Frame = 1
Query:    1 PNQEAKRDTMSSMEPESVDPKNARYPYCVVWSPLPLITWFLPFIGHMGIADSSGVIHDFAGSYMIGEDHMAFGAATRYVQLHPARCSADSWDEAVAKADDVYRKRIHNICCDNCHSHVALALNRMGYGGSSRWDMAKLCAWLFFRGRFVSVGGFLRQWVPIVVIL 495
            PN  A     +  E   +D    R+P+C+VWSP+P++TWFLPFIGHMGIADS GVI DFAG Y IG D  AFGAATRY+Q   A      WDEAVA    +Y KR+HN+CCDNCHSHVA+ L  + Y G  RW+M +LC W+FFRG++V++ GF++ W+P V +L
Sbjct:   33 PNHIAVSRASNGSEGAVIDAAVHRFPFCIVWSPIPILTWFLPFIGHMGIADSKGVIFDFAGPYTIGRDDFAFGAATRYLQCSIAPEDVAKWDEAVAAGCKIYEKRMHNLCCDNCHSHVAVCLEHVNYAGRKRWNMVELCFWMFFRGKYVNMAGFIKSWLPFVFVL 197          
BLAST of mRNA_P-wetherbeei_contig978.1.1 vs. uniprot
Match: UPI0003F0CFAF (transmembrane protein 222-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0CFAF)

HSP 1 Score: 205 bits (521), Expect = 2.000e-64
Identity = 93/171 (54.39%), Postives = 124/171 (72.51%), Query Frame = 1
Query:   19 RDTMSSME---PESVDPKNARYPYCVVWSPLPLITWFLPFIGHMGIADSSGVIHDFAGSYMIGEDHMAFGAATRYVQLHPARCSADSWDEAVAKADDVYRKRIHNICCDNCHSHVALALNRMGYGGSSRWDMAKLCAWLFFRGRFVSVGGFLRQWVP---IVVILVGLCVF 513
            +DTM  M+      VD + +RYPY +VW+P+P++TW  PFIGHMGI  SSGVI DFAG Y + ED M FG  TRY+QL+P+    +SWD AV+ A + Y+ R+HN+CCDNCHSHVA+ALN M Y GS+ W+M KLC W+FFR ++V+  GFL+QW+P   +V ++V L VF
Sbjct:   24 QDTMPEMKINMNSQVDKQRSRYPYSIVWTPIPMLTWIFPFIGHMGICMSSGVIRDFAGPYYVSEDCMGFGNPTRYLQLNPSNTRKESWDIAVSSASEEYKNRMHNLCCDNCHSHVAMALNLMQYDGSTSWNMFKLCFWIFFRAKYVNFLGFLKQWLPFLLLVTLIVCLAVF 194          
BLAST of mRNA_P-wetherbeei_contig978.1.1 vs. uniprot
Match: H3G748_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G748_PHYRM)

HSP 1 Score: 203 bits (516), Expect = 3.030e-64
Identity = 83/147 (56.46%), Postives = 110/147 (74.83%), Query Frame = 1
Query:   70 RYPYCVVWSPLPLITWFLPFIGHMGIADSSGVIHDFAGSYMIGEDHMAFGAATRYVQLHPARCSADSWDEAVAKADDVYRKRIHNICCDNCHSHVALALNRMGYGGSSRWDMAKLCAWLFFRGRFVSVGGFLRQWVPIVVILVGLCV 510
            R+P+C+VWSP+P++TWFLPFIGH+G+ADS GVI DFAG Y IG D  AFGA TRY+Q   A  + D WDEA+A    +Y KR+HN+CCDNCHSHVA+ L   GY G +RW+M +LC W+FFR ++V V GF++ W+P   ++V + V
Sbjct:    7 RFPFCIVWSPIPILTWFLPFIGHLGLADSKGVIFDFAGPYTIGRDDFAFGAPTRYLQCQVAPEAVDQWDEALAAGCKIYEKRMHNLCCDNCHSHVAVCLEHAGYAGRTRWNMVELCFWVFFRAKYVGVAGFVKSWLPFAFVVVMIAV 153          
BLAST of mRNA_P-wetherbeei_contig978.1.1 vs. uniprot
Match: A0A6A4FPD7_9STRA (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FPD7_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.390e-63
Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 1
Query:   49 SVDPKNARYPYCVVWSPLPLITWFLPFIGHMGIADSSGVIHDFAGSYMIGEDHMAFGAATRYVQLHPARCSADSWDEAVAKADDVYRKRIHNICCDNCHSHVALALNRMGYGGSSRWDMAKLCAWLFFRGRFVSVGGFLRQWVPIVVIL 495
            ++D    R+P+C+VWSP+P++TWFLPFIGH+G+ADS GVI DFAG   IG D  AFGA TRY+Q   A      WDEAVA    +Y KR+HN+CCDNCHSHVA+ L    YGG  RW+M +LC W+FFRG++VSV GFL+ W+P V +L
Sbjct:   49 TIDAAVHRFPFCIVWSPIPILTWFLPFIGHLGLADSKGVIFDFAGPCTIGRDDFAFGAPTRYLQCTVAPDDVAKWDEAVAAGCKIYEKRMHNLCCDNCHSHVAVCLEHADYGGRKRWNMVELCFWVFFRGKYVSVAGFLKSWLPFVFVL 197          
BLAST of mRNA_P-wetherbeei_contig978.1.1 vs. uniprot
Match: A0A3F2RC47_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RC47_9STRA)

HSP 1 Score: 202 bits (514), Expect = 3.080e-63
Identity = 87/149 (58.39%), Postives = 108/149 (72.48%), Query Frame = 1
Query:   49 SVDPKNARYPYCVVWSPLPLITWFLPFIGHMGIADSSGVIHDFAGSYMIGEDHMAFGAATRYVQLHPARCSADSWDEAVAKADDVYRKRIHNICCDNCHSHVALALNRMGYGGSSRWDMAKLCAWLFFRGRFVSVGGFLRQWVPIVVIL 495
            +VD    R+P+C+VWSP+P++TWFLPFIGHMG+ADS+GVI DFAG Y IG D  AFGAATRY+Q         +WDEAVA    +Y  R+HN+CCDNCHSHVA+ L    Y G  RW+M  LC W+FFRG++VSV GFL+ W+P   IL
Sbjct:   46 AVDAAVHRFPFCIVWSPIPILTWFLPFIGHMGLADSNGVIFDFAGPYTIGRDDFAFGAATRYLQCKVEPEDVANWDEAVASGCKIYETRMHNLCCDNCHSHVAVCLEHFQYAGRRRWNMVHLCFWMFFRGKYVSVAGFLKSWLPFAFIL 194          
BLAST of mRNA_P-wetherbeei_contig978.1.1 vs. uniprot
Match: UPI000A2A6CCD (transmembrane protein 222 isoform X2 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A6CCD)

HSP 1 Score: 201 bits (510), Expect = 6.360e-63
Identity = 90/158 (56.96%), Postives = 116/158 (73.42%), Query Frame = 1
Query:   49 SVDPKNARYPYCVVWSPLPLITWFLPFIGHMGIADSSGVIHDFAGSYMIGEDHMAFGAATRYVQLHPARCSA--DSWDEAVAKADDVYRKRIHNICCDNCHSHVALALNRMGYGGSSRWDMAKLCAWLFFRGRFVSVGGFLRQWVPIVVILVGLCVFT 516
            +VDPK  RYP+C+VW+P+PL+TW  PFIGHMGIA SSGVI DFAG Y + ED MAFG  TRY +L+PA+ ++   SWD AV+ A D Y+ R+HN+CCDNCHSHVA+ALN M Y  SS W+M KL  +    G+FVS GGFL+ W+P V++  G+ +  
Sbjct:   23 NVDPKRNRYPFCIVWTPIPLLTWIFPFIGHMGIAMSSGVIRDFAGPYYVSEDCMAFGNPTRYWRLNPAKVTSTSSSWDTAVSSASDEYKHRMHNLCCDNCHSHVAMALNLMQYDKSSSWNMFKLALYSLVFGKFVSFGGFLKTWLPFVILCTGIALLV 180          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig978.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5J1_ECTSI6.280e-7366.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D0NEB0_PHYIT2.740e-6756.96Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
V9F8B3_PHYPR9.910e-6758.78Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A329T2L8_9STRA1.150e-6558.78Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A2P4X3X7_9STRA1.460e-6454.55Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
UPI0003F0CFAF2.000e-6454.39transmembrane protein 222-like n=1 Tax=Saccoglossu... [more]
H3G748_PHYRM3.030e-6456.46Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A4FPD7_9STRA2.390e-6357.72Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A3F2RC47_9STRA3.080e-6358.39Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
UPI000A2A6CCD6.360e-6356.96transmembrane protein 222 isoform X2 n=1 Tax=Exaip... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig978contigP-wetherbeei_contig978:1415..2061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5J1
Preferred nameTMEM222
PFAMsDUF778
Model size519
Max annot lvl2759|Eukaryota
KEGG koko:K20726
KEGG Pathwayko04016,map04016
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.59e-74
EggNOG OGsKOG3150@1|root,KOG3150@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF778
Ec32 orthologEc-22_000840.1
DescriptionProtein of unknown function (DUF778)
Cds size492
COG categoryS
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187109.8097503-UTR-P-wetherbeei_contig978:1414..14411683187109.8097503-UTR-P-wetherbeei_contig978:1414..1441Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig978 1415..1441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187109.819535-CDS-P-wetherbeei_contig978:1441..15481683187109.819535-CDS-P-wetherbeei_contig978:1441..1548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig978 1442..1548 +
1683187109.827757-CDS-P-wetherbeei_contig978:1676..20611683187109.827757-CDS-P-wetherbeei_contig978:1676..2061Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig978 1677..2061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig978.1.1prot_P-wetherbeei_contig978.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig978 1442..2061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig978.1.1

>prot_P-wetherbeei_contig978.1.1 ID=prot_P-wetherbeei_contig978.1.1|Name=mRNA_P-wetherbeei_contig978.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MSSMEPESVDPKNARYPYCVVWSPLPLITWFLPFIGHMGIADSSGVIHDF
AGSYMIGEDHMAFGAATRYVQLHPARCSADSWDEAVAKADDVYRKRIHNI
CCDNCHSHVALALNRMGYGGSSRWDMAKLCAWLFFRGRFVSVGGFLRQWV
PIVVILVGLCVFT*
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mRNA from alignment at P-wetherbeei_contig978:1415..2061+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig978.1.1 ID=mRNA_P-wetherbeei_contig978.1.1|Name=mRNA_P-wetherbeei_contig978.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=647bp|location=Sequence derived from alignment at P-wetherbeei_contig978:1415..2061+ (Phaeothamnion wetherbeei SAG_119_79)
CCAAACCAGGAGGCCAAACGCGACACCATGTCGTCAATGGAGCCGGAGAG CGTGGATCCGAAGAACGCACGCTATCCATACTGCGTCGTGTGGTCCCCTC TTCCGTTAATAACGTGGTTCTTGCCGTTCATCGGGTAATGTTTTGTCGTG CATCTCGCAAAGTCAATCCTTAGTACAGCTGCAAGCTGTTCATAACCTCA AACCATCCGCTTTTGCCACTGTAATTGGAATCCCTCGCCTCCCTCATTCT TATCAATTCCAGGCATATGGGTATTGCGGACAGCAGCGGAGTGATCCACG ACTTTGCCGGCTCGTACATGATCGGCGAGGACCACATGGCGTTCGGCGCA GCGACGCGGTACGTCCAGCTGCACCCGGCGCGCTGTTCCGCCGACTCGTG GGACGAGGCAGTGGCGAAGGCCGACGACGTCTACAGGAAACGCATCCACA ACATTTGCTGTGACAATTGCCACTCGCACGTGGCGCTAGCGCTCAATCGG ATGGGGTATGGGGGCAGCAGCCGCTGGGACATGGCGAAGCTCTGCGCCTG GCTGTTCTTCCGCGGCCGGTTCGTGTCCGTCGGGGGCTTCCTGAGGCAGT GGGTGCCGATCGTTGTCATCCTCGTCGGGCTGTGTGTCTTTACGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig978:1415..2061+

>mRNA_P-wetherbeei_contig978.1.1 ID=mRNA_P-wetherbeei_contig978.1.1|Name=mRNA_P-wetherbeei_contig978.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig978:1415..2061+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCAATGGAGCCGGAGAGCGTGGATCCGAAGAACGCACGCTATCC
ATACTGCGTCGTGTGGTCCCCTCTTCCGTTAATAACGTGGTTCTTGCCGT
TCATCGGGCATATGGGTATTGCGGACAGCAGCGGAGTGATCCACGACTTT
GCCGGCTCGTACATGATCGGCGAGGACCACATGGCGTTCGGCGCAGCGAC
GCGGTACGTCCAGCTGCACCCGGCGCGCTGTTCCGCCGACTCGTGGGACG
AGGCAGTGGCGAAGGCCGACGACGTCTACAGGAAACGCATCCACAACATT
TGCTGTGACAATTGCCACTCGCACGTGGCGCTAGCGCTCAATCGGATGGG
GTATGGGGGCAGCAGCCGCTGGGACATGGCGAAGCTCTGCGCCTGGCTGT
TCTTCCGCGGCCGGTTCGTGTCCGTCGGGGGCTTCCTGAGGCAGTGGGTG
CCGATCGTTGTCATCCTCGTCGGGCTGTGTGTCTTTACGTGA
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