mRNA_P-wetherbeei_contig9747.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9747.2.1
Unique NamemRNA_P-wetherbeei_contig9747.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9747.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9747contigP-wetherbeei_contig9747:1758..2144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog909613.UO65_3865
Model size387
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000277
EggNOG OGs2C2NP@1|root,334Y5@2|Bacteria,2IDXP@201174|Actinobacteria,4E42Q@85010|Pseudonocardiales
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187107.9940424-CDS-P-wetherbeei_contig9747:1757..21441683187107.9940424-CDS-P-wetherbeei_contig9747:1757..2144Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9747 1758..2144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9747.2.1prot_P-wetherbeei_contig9747.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9747 1758..2144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9747.2.1

>prot_P-wetherbeei_contig9747.2.1 ID=prot_P-wetherbeei_contig9747.2.1|Name=mRNA_P-wetherbeei_contig9747.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
LSTASLEALCDGWVEGALAGSTGRTADGQIDVLQFAPLTVLAHRARQHHE
QGFPAIPLVLVVVVLDDDLVLAHPGLIADHVQAVFGGGETLARGRRGPLL
ILTPRLPSLAERTRALIVALAADPVLGVA
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mRNA from alignment at P-wetherbeei_contig9747:1758..2144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9747.2.1 ID=mRNA_P-wetherbeei_contig9747.2.1|Name=mRNA_P-wetherbeei_contig9747.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig9747:1758..2144+ (Phaeothamnion wetherbeei SAG_119_79)
TTGTCGACCGCATCGCTGGAGGCGCTGTGCGACGGATGGGTGGAGGGCGC
GCTGGCCGGTTCCACGGGCCGCACGGCGGACGGTCAGATCGATGTCCTAC
AGTTCGCACCTCTCACCGTGCTCGCCCATCGTGCTCGTCAGCACCACGAG
CAGGGGTTCCCGGCGATCCCACTGGTCCTCGTCGTCGTGGTCCTCGATGA
CGACCTCGTGCTCGCCCACCCCGGCCTGATCGCCGATCACGTGCAGGCCG
TGTTCGGCGGCGGAGAGACCCTTGCCCGCGGCCGGCGTGGCCCGCTGCTG
ATCCTCACTCCCCGCCTCCCGTCGCTGGCCGAACGCACCCGAGCGCTGAT
CGTCGCCCTGGCGGCCGACCCCGTCCTCGGCGTCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9747:1758..2144+

>mRNA_P-wetherbeei_contig9747.2.1 ID=mRNA_P-wetherbeei_contig9747.2.1|Name=mRNA_P-wetherbeei_contig9747.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig9747:1758..2144+ (Phaeothamnion wetherbeei SAG_119_79)
TTGTCGACCGCATCGCTGGAGGCGCTGTGCGACGGATGGGTGGAGGGCGC
GCTGGCCGGTTCCACGGGCCGCACGGCGGACGGTCAGATCGATGTCCTAC
AGTTCGCACCTCTCACCGTGCTCGCCCATCGTGCTCGTCAGCACCACGAG
CAGGGGTTCCCGGCGATCCCACTGGTCCTCGTCGTCGTGGTCCTCGATGA
CGACCTCGTGCTCGCCCACCCCGGCCTGATCGCCGATCACGTGCAGGCCG
TGTTCGGCGGCGGAGAGACCCTTGCCCGCGGCCGGCGTGGCCCGCTGCTG
ATCCTCACTCCCCGCCTCCCGTCGCTGGCCGAACGCACCCGAGCGCTGAT
CGTCGCCCTGGCGGCCGACCCCGTCCTCGGCGTCGCC
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