mRNA_P-wetherbeei_contig9744.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9744.1.1
Unique NamemRNA_P-wetherbeei_contig9744.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9744.1.1 vs. uniprot
Match: D7FLL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL4_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.800e-25
Identity = 58/162 (35.80%), Postives = 82/162 (50.62%), Query Frame = 1
Query:    1 DLLTCDGPCMRTYHLKCVKAEERPPEREDGAAPIAWLCADCEHGVHVCLLCNRPGKLNQPGDSGVFKCGVRSCGRFYHKKCAEVAELASAAAAA--------ACRFNCPLHYCKVCRKSAGEVGHRSSVCKCLRCPNGVHDQCLAHLKRYVRKGRMMVCDAH 462
            D++TCDGPC+R++H+ C+   E      D      WLC DCE   H C  C   G+ N  G  GVF+CGV SCGRFYH+ C E+ + +   A            +F C  H C  C   +G  G ++ + KC++CP   H  C+    RY      ++C+AH
Sbjct:  240 DMVTCDGPCLRSFHVVCLDLGE------DALKEEKWLCEDCERAEHECWQCGDYGQDNVVG--GVFRCGVPSCGRFYHRHCVELNKNSVVKADVDEGEDGQPIFKFRCAYHTCDTC--CSGRGGTKNHLYKCIKCPTAYHLNCIPPDARYHELA--LICEAH 389          
BLAST of mRNA_P-wetherbeei_contig9744.1.1 vs. uniprot
Match: D3B878_POLPP (PHD zinc finger-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B878_POLPP)

HSP 1 Score: 109 bits (272), Expect = 5.890e-25
Identity = 52/160 (32.50%), Postives = 76/160 (47.50%), Query Frame = 1
Query:    1 DLLTCDGPCMRTYHLKCVKAEERPPEREDGAAPIAWLCADCEHGVHVCLLCNRPGKLNQPGDSGVFKCGVRSCGRFYHKKCAEVAELASAAAAAACRFNCPLHYCKVCRKSAGEVGHRSSVCKCLRCPNGVHDQCLAHLKRYVRKGR------MMVCDAH 462
            +LL CDGPC+R++H+ C+  +  P  R        W C+DC    ++C  C   G +N      + KC V  CG+FYH KC    +L       + RFNCPLHYC+ C    G  G       C RCP   H  C+  + + + K +      +++C  H
Sbjct:   79 NLLMCDGPCLRSFHIDCIGLDSMPTSR--------WECSDCSKNQNICFACKERGIINM----NLTKCKVHQCGKFYHNKCISEFKLTKVVNTKSPRFNCPLHYCESC----GVSGDGKQSVHCFRCPTAYHVICMPPVVKMLTKSKETRKTGLILCPKH 222          
BLAST of mRNA_P-wetherbeei_contig9744.1.1 vs. uniprot
Match: A0A484E7L2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7L2_BRELC)

HSP 1 Score: 103 bits (258), Expect = 6.520e-23
Identity = 54/168 (32.14%), Postives = 77/168 (45.83%), Query Frame = 1
Query:    1 DLLTCDGPCMRTYHLKCVKAEERPPEREDGAAPIAWLCADCEHGVHVCLLCNRPGKLNQPGDSGVFKCGVRSCGRFYHKKCAEVAELASAAAAAA--------------CRFNCPLHYCKVCRKSAGEVGHRSSVCKCLRCPNGVHDQCLAHLKRYVRKGRMMVCDAH 462
            D++ CDG C+++YH  C+  +  P   E       WLC  C     +C  C R G +N+ G  GVF+CGV SCG+F+H+ C +   L+  A   +                F CP H C VC +        S +  CL+CP   H QC+    RY   G  ++C  H
Sbjct:  300 DMILCDGGCLKSYHFSCLGIDSAPGGEE-------WLCEQCRTNEQLCFACGRNGSINEKG--GVFRCGVASCGKFFHQTCIDANRLSRRAGGKSKPSLSTLEGLLESEAFFRCPRHICFVCEQKRKS----SDLMYCLKCPEAYHPQCVPPSARYNSVG--LLCWKH 452          
BLAST of mRNA_P-wetherbeei_contig9744.1.1 vs. uniprot
Match: UPI000644EF62 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644EF62)

HSP 1 Score: 102 bits (254), Expect = 1.810e-22
Identity = 52/160 (32.50%), Postives = 75/160 (46.88%), Query Frame = 1
Query:    1 DLLTCDGPCMRTYHLKCVKAEERPPEREDGAAPIAWLCADCEHGVHVCLLCNRPGKLNQPGDSGVFKCGVRSCGRFYHKKCAEVAELASAAAAAACRFNCPLHYCKVCRKSAGEVGHRSSVCKCLRCPNGVHDQCLAH------LKRYVRKGRMMVCDAH 462
            +LL CDGPC+R++H+ C+     P   +       W C DC +  ++C  C + G +       + KC V  CG+FYH KC    +LA    + + RFNCPLHYC+ C    G  G       C RCP   H  C+          +  RK  +++C  H
Sbjct:  110 ELLMCDGPCLRSFHVDCLGLGSTPAPNQ------RWECDDCLNQQNICFACKKRGIVGMD----LMKCKVHQCGKFYHHKCVGDFKLAKVVNSKSPRFNCPLHYCETC----GVSGDGKQSVHCFRCPTAYHVICMPPGVKMLTKSKETRKTGLILCPKH 255          
BLAST of mRNA_P-wetherbeei_contig9744.1.1 vs. uniprot
Match: Y8158_DICDI (PHD finger-containing protein DDB_G0268158 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Y8158_DICDI)

HSP 1 Score: 100 bits (250), Expect = 7.470e-22
Identity = 55/167 (32.93%), Postives = 73/167 (43.71%), Query Frame = 1
Query:    1 DLLTCDGPCMRTYHLKCVKAEERPPEREDGAAPIA-------WLCADCEHGVHVCLLCNRPGKLNQPGDSGVFKCGVRSCGRFYHKKCAEVAELASAAAAAACRFNCPLHYCKVCRKSAGEVGHRSSVCKCLRCPNGVHDQCLAH------LKRYVRKGRMMVCDAH 462
            +LL CDG C+R++H+ C+KA           +P+        W C DC    + C  C + G +       + KC V  CG+FYH KC    +LA        RFNCPLHYC VC  S    G       C RCP   H  C+          R  RK  +++C  H
Sbjct:  147 ELLMCDGLCLRSFHISCLKARNLYNPSSSSISPVTTIDGTVRWECNDCVSSQNSCFSCKKRGIIG----IDLMKCKVHQCGKFYHYKCVADYKLAKLINTKTPRFNCPLHYCSVCEVS----GDGKQSVHCFRCPTAYHVICMQPGVKMLTKTRETRKTGLVLCPKH 305          
BLAST of mRNA_P-wetherbeei_contig9744.1.1 vs. uniprot
Match: E1ZK22_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZK22_CHLVA)

HSP 1 Score: 88.2 bits (217), Expect = 2.090e-17
Identity = 56/149 (37.58%), Postives = 69/149 (46.31%), Query Frame = 1
Query:    1 DLLTCDGPCMRTYHLKCVKAEER-------PPEREDGAAPIA----WLCADCEHGVHVCLLCNRPGKLNQPGDSGVFKCGVRSCGRFYHKKCAEVAELASAAAAAACRFNCPLHYCKVCRK--SAGEVGHRSSVCKCLRCPNGVHDQCL 408
            +LL CDGPCMR++H   V AE+        PP+        A    +LC +C  GVH C +C R GK      + VFKC   SCGR YH +CA         A A   F C LH C  C +   A   G    +  C RCP   H +CL
Sbjct:  398 NLLACDGPCMRSFH---VSAEDDGCNLLCLPPDLAQTLTSAANSETFLCPNCLAGVHQCYVCKREGKAG----TEVFKCINASCGRHYHPECA--------GAEAGQPFVCKLHSCHACGQPGDASAPGQAGELVPCRRCPVAFHRRCL 531          
BLAST of mRNA_P-wetherbeei_contig9744.1.1 vs. uniprot
Match: A0A0H5R7I3_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R7I3_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 3.460e-17
Identity = 50/158 (31.65%), Postives = 72/158 (45.57%), Query Frame = 1
Query:    1 DLLTCDGPCMRTYHLKCVKAEERPPEREDGAAPIAWLCADCEHGVHVCLLCNRPGKLNQPGDSGVFKCGVRSCGRFYHKKCAEVAELASAAAAAAC----RFNCPLHYCKVCRKSAGEVGHRSSVCKCLRCPNGVHDQCLAHLKRYVRKGRMMVCDAH 462
            +LL CDGPC+R++H+ CV   E P +         W C+DC+   H C +C+  G         VF+CG  +CG F+H  C    EL    +         F CP H C  C++ A    H + + +C RC +  H  CL      +   R +VC  H
Sbjct:  194 NLLCCDGPCLRSFHISCVGLPEFPSDER-------WFCSDCQMKSHQCAVCSERGT----DFVDVFQCGHVACGLFFHLGCVNPHELTKKKSKTRGTNRGNFICPHHSCTKCKQPA----HSALLLQCNRCVDSYHIDCLVSGSICIN-ARSIVCPKH 335          
BLAST of mRNA_P-wetherbeei_contig9744.1.1 vs. uniprot
Match: A0A2P6U412_CHLSO (ENHANCED DOWNY MILDEW 2-like isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U412_CHLSO)

HSP 1 Score: 84.7 bits (208), Expect = 3.630e-16
Identity = 49/141 (34.75%), Postives = 66/141 (46.81%), Query Frame = 1
Query:    1 DLLTCDGPCMRTYHLKCVKAEERPPEREDGAAPIA-----WLCADCEHGVHVCLLCNRPGKLNQPGDSGVFKCGVRSCGRFYHKKCAEVAELASAAAAAACRFNCPLHYCKVCRKSAGEVGHRSSVCKCLRCPNGVHDQCL 408
            +LL CDGPCMR++H+            +D A  +A     + C +C  GV  C +C + G+ N+     VFKC   SCGR YH +CA+V             F C LH CK C + A        +  C RCP   H +CL
Sbjct:  211 NLLACDGPCMRSFHVGTGTECNLLGLPKDLAELLATTSDTFRCPNCLAGVQQCFVCKKEGEENKD----VFKCIHASCGRHYHPRCADVEPGRP--------FACKLHACKACGQPAERGSKEGELVPCRRCPQAWHRRCL 339          
BLAST of mRNA_P-wetherbeei_contig9744.1.1 vs. uniprot
Match: A0A1A7WSJ4_9TELE (Nuclear receptor binding SET domain protein 1a n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7WSJ4_9TELE)

HSP 1 Score: 84.7 bits (208), Expect = 3.650e-16
Identity = 47/144 (32.64%), Postives = 66/144 (45.83%), Query Frame = 1
Query:    1 DLLTCDGPCMRTYHLKCVKAEERPPEREDGAAPIAWLCADCEHGVHVCLLCNRPGKLNQPGDSGVFKCGVRSCGRFYHKKCAEV---AELASAAAAAACRFNCPLHYCKVCR--KSAGEVGHRSSVCKCLRCPNGVH--DQCLA 411
            DLL CDG C   +HL+C+     P  R        +LC DC+ GVH+C +C + G       SGV +C +  CG+FYH  C       +L +        F CP+H C  C           +  + +C+RCP   H  D C+A
Sbjct: 1266 DLLVCDGHCFGAFHLQCIGLSAAPRGR--------FLCRDCKTGVHLCYVCKKSG-------SGVKRCIIPLCGKFYHTDCITAYSPTQLHNKG------FRCPMHVCLSCHIANPLNICSTKGRLARCVRCPVAYHANDNCMA 1388          
BLAST of mRNA_P-wetherbeei_contig9744.1.1 vs. uniprot
Match: UPI001CD8B268 (histone-lysine N-methyltransferase, H3 lysine-36 specific n=1 Tax=Solea senegalensis TaxID=28829 RepID=UPI001CD8B268)

HSP 1 Score: 83.6 bits (205), Expect = 9.240e-16
Identity = 48/142 (33.80%), Postives = 67/142 (47.18%), Query Frame = 1
Query:    1 DLLTCDGPCMRTYHLKCVKAEERPPEREDGAAPIAWLCADCEHGVHVCLLCNRPGKLNQPGDSGVFKCGVRSCGRFYHKKCAEVAELASAAAAAACR-FNCPLHYCKVCR--KSAGEVGHRSSVCKCLRCPNGVH--DQCLA 411
            DLL CDG C   +HL+C+     P  +        +LC +C+ GVH C +CN+ G       SGV +C +  CG+FYH  C     LA +A     +   CPLH C  C           +  + +C+RCP   H  D C+A
Sbjct: 1284 DLLVCDGHCYGAFHLQCIGLSVAPRGK--------FLCHECKTGVHTCFVCNKSG-------SGVKRCIIPLCGKFYHSDCI----LAYSATQPHNKGLRCPLHVCLSCHITNPLNVCSTKGRLARCVRCPVAYHTNDNCMA 1406          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9744.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL4_ECTSI1.800e-2535.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D3B878_POLPP5.890e-2532.50PHD zinc finger-containing protein n=1 Tax=Polysph... [more]
A0A484E7L2_BRELC6.520e-2332.14Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
UPI000644EF621.810e-2232.50hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
Y8158_DICDI7.470e-2232.93PHD finger-containing protein DDB_G0268158 n=1 Tax... [more]
E1ZK22_CHLVA2.090e-1737.58Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A0H5R7I3_9EUKA3.460e-1731.65Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A2P6U412_CHLSO3.630e-1634.75ENHANCED DOWNY MILDEW 2-like isoform X1 n=1 Tax=Ch... [more]
A0A1A7WSJ4_9TELE3.650e-1632.64Nuclear receptor binding SET domain protein 1a n=1... [more]
UPI001CD8B2689.240e-1633.80histone-lysine N-methyltransferase, H3 lysine-36 s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9744contigP-wetherbeei_contig9744:1050..2028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI40496
PFAMsBromodomain,Chromo,Helicase_C,PHD,SNF2_N,zf-HC5HC2H
Model size462
Max annot lvl4776|Peronosporales
KEGG koko:K14437
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.51e-22
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG0384@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1245@2759|Eukaryota,KOG1474@2759|Eukaryota,KOG4443@2759|Eukaryota,3Q7TF@4776|Peronosporales
EC3.6.4.12
DescriptionPHD-like zinc-binding domain
Cds size435
COG categoryK
BRITEko00000,ko01000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187107.932012-UTR-P-wetherbeei_contig9744:1049..10761683187107.932012-UTR-P-wetherbeei_contig9744:1049..1076Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9744 1050..1076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187107.9445882-CDS-P-wetherbeei_contig9744:1076..11791683187107.9445882-CDS-P-wetherbeei_contig9744:1076..1179Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9744 1077..1179 +
1683187107.9550028-CDS-P-wetherbeei_contig9744:1423..15361683187107.9550028-CDS-P-wetherbeei_contig9744:1423..1536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9744 1424..1536 +
1683187107.9654212-CDS-P-wetherbeei_contig9744:1809..20281683187107.9654212-CDS-P-wetherbeei_contig9744:1809..2028Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9744 1810..2028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9744.1.1prot_P-wetherbeei_contig9744.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9744 1077..2028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9744.1.1

>prot_P-wetherbeei_contig9744.1.1 ID=prot_P-wetherbeei_contig9744.1.1|Name=mRNA_P-wetherbeei_contig9744.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MRTYHLKCVKAEERPPEREDGAAPIAWLCADCEHGVHVCLLCNRPGKLNQ
PGDSGVFKCGVRSCGRFYHKKCAEVAELASAAAAAACRFNCPLHYCKVCR
KSAGEVGHRSSVCKCLRCPNGVHDQCLAHLKRYVRKGRMMVCDAH
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mRNA from alignment at P-wetherbeei_contig9744:1050..2028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9744.1.1 ID=mRNA_P-wetherbeei_contig9744.1.1|Name=mRNA_P-wetherbeei_contig9744.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=979bp|location=Sequence derived from alignment at P-wetherbeei_contig9744:1050..2028+ (Phaeothamnion wetherbeei SAG_119_79)
GACCTGCTGACGTGCGATGGCCCGTGCATGCGGACGTACCATTTGAAGTG TGTCAAGGCGGAGGAGCGACCGCCCGAGCGGGAGGACGGGGCGGCGCCCA TCGCATGGCTGTGCGCGGACTGCGAGCACGGTGAGATTTGAAAGGAAGGG CACTTTTTGATATCGTTGCATCCATAGCGAAGGCCGTGGTACGACCACAT GCTTCTCTCGGTTGGGCCGTTTATTTTCCGCTGTGCTCTTTGTCGATGCC GCAACTGTTTATGTACATCTCTCTTGACACTGACCGTTCTTGGCTGTCCT TGCTGCACCGGCCATTTCACTTTTTGTTCCATTGCTCCGTCGCTTCACTT TTTCTTCCCTCGCTGTTCTGGCAGGCGTGCATGTGTGCCTGCTGTGCAAC CGGCCGGGCAAGCTCAACCAGCCGGGGGACAGTGGTGTCTTTAAGTGCGG CGTGCGCAGCTGCGGCCGCTTCTACCACAAGAAGTGCGTCATGGCGGACG ACCGCGTCCGCTGGAATGTGCCGCCGGGATCGCCGGCCGCCGCCGCCGCC AGCAACGCCGTGTCCATGGCTGCCACCCTGGGCACCAAGCTGGCCGCCCC TGTCTCGTCGAACCCTGCCGCCGTCTCCGCGGCGGCGGCTGCGGCGGCCG CGGCGTCGGCGGCCGGCGGCAGCGCCAGCGACGCCGGCGCGGCGGCGGCG ATGGCGGCAATGGTGGCGGCGATGGAGGCAGACCGTGCGGCGGAGAGGGC ACGGGCGGAGGCCGAGGTGGCGGAGCTGGCATCGGCGGCGGCGGCGGCGG CGTGCCGCTTCAACTGTCCGCTGCACTACTGCAAGGTGTGCCGCAAGAGC GCCGGCGAGGTCGGCCACCGCTCGAGCGTCTGCAAGTGCCTCCGCTGCCC CAATGGCGTGCACGACCAGTGCCTGGCGCACCTTAAGCGGTACGTGCGCA AGGGCCGCATGATGGTATGCGACGCGCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9744:1050..2028+

>mRNA_P-wetherbeei_contig9744.1.1 ID=mRNA_P-wetherbeei_contig9744.1.1|Name=mRNA_P-wetherbeei_contig9744.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig9744:1050..2028+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGACGTACCATTTGAAGTGTGTCAAGGCGGAGGAGCGACCGCCCGA
GCGGGAGGACGGGGCGGCGCCCATCGCATGGCTGTGCGCGGACTGCGAGC
ACGGCGTGCATGTGTGCCTGCTGTGCAACCGGCCGGGCAAGCTCAACCAG
CCGGGGGACAGTGGTGTCTTTAAGTGCGGCGTGCGCAGCTGCGGCCGCTT
CTACCACAAGAAGTGCGCCGAGGTGGCGGAGCTGGCATCGGCGGCGGCGG
CGGCGGCGTGCCGCTTCAACTGTCCGCTGCACTACTGCAAGGTGTGCCGC
AAGAGCGCCGGCGAGGTCGGCCACCGCTCGAGCGTCTGCAAGTGCCTCCG
CTGCCCCAATGGCGTGCACGACCAGTGCCTGGCGCACCTTAAGCGGTACG
TGCGCAAGGGCCGCATGATGGTATGCGACGCGCAC
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