mRNA_P-wetherbeei_contig9743.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9743.1.1
Unique NamemRNA_P-wetherbeei_contig9743.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9743.1.1 vs. uniprot
Match: A0A1W5CYZ0_9LECA (WSC domain-containing protein n=1 Tax=Lasallia pustulata TaxID=136370 RepID=A0A1W5CYZ0_9LECA)

HSP 1 Score: 61.6 bits (148), Expect = 4.360e-8
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 1 
Query:  148 ATAKFRVTCETFASGAFMDPLEYPGKRSSHRHDIGGSLGFNANRVNAKAMQLNVSTCDILGDFSNYWAPTFYFH 369
            A A +R+ C+T       DP+  PGK S H H I G  GF+     A       S+C ++GD SNYW PT Y+H
Sbjct:   21 AVAFWRLPCKTPIVVERADPVISPGKPSGHVHTIMGGNGFSFTMDYASTQSSTCSSCTVIGDKSNYWVPTLYYH 94
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BLAST of mRNA_P-wetherbeei_contig9743.1.1 vs. uniprot
Match: A0A5M8PEJ8_9LECA (Uncharacterized protein n=1 Tax=Lasallia pustulata TaxID=136370 RepID=A0A5M8PEJ8_9LECA)

HSP 1 Score: 61.6 bits (148), Expect = 4.590e-8
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 1 
Query:  148 ATAKFRVTCETFASGAFMDPLEYPGKRSSHRHDIGGSLGFNANRVNAKAMQLNVSTCDILGDFSNYWAPTFYFH 369
            A A +R+ C+T       DP+  PGK S H H I G  GF+     A       S+C ++GD SNYW PT Y+H
Sbjct:   21 AVAFWRLPCKTPIVVERADPVISPGKPSGHVHTIMGGNGFSFTMDYASTQSSTCSSCTVIGDKSNYWVPTLYYH 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9743.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1W5CYZ0_9LECA4.360e-840.54WSC domain-containing protein n=1 Tax=Lasallia pus... [more]
A0A5M8PEJ8_9LECA4.590e-840.54Uncharacterized protein n=1 Tax=Lasallia pustulata... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9743contigP-wetherbeei_contig9743:201..1730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog29875.EHK26019
PFAMsDUF1996
Model size492
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.35e-10
EggNOG OGs2DYUK@1|root,2S6VN@2759|Eukaryota,39KA6@33154|Opisthokonta,3Q4NY@4751|Fungi,3RMY3@4890|Ascomycota,21R2Y@147550|Sordariomycetes,3TDTE@5125|Hypocreales,3U03R@5129|Hypocreaceae
DescriptionDomain of unknown function (DUF1996)
Cds size489
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187107.873443-CDS-P-wetherbeei_contig9743:200..2861683187107.873443-CDS-P-wetherbeei_contig9743:200..286Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9743 201..286 +
1683187107.8835678-CDS-P-wetherbeei_contig9743:637..7901683187107.8835678-CDS-P-wetherbeei_contig9743:637..790Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9743 638..790 +
1683187107.8926892-CDS-P-wetherbeei_contig9743:1146..12451683187107.8926892-CDS-P-wetherbeei_contig9743:1146..1245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9743 1147..1245 +
1683187107.901755-CDS-P-wetherbeei_contig9743:1578..17291683187107.901755-CDS-P-wetherbeei_contig9743:1578..1729Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9743 1579..1729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9743.1.1prot_P-wetherbeei_contig9743.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9743 201..1729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9743.1.1

>prot_P-wetherbeei_contig9743.1.1 ID=prot_P-wetherbeei_contig9743.1.1|Name=mRNA_P-wetherbeei_contig9743.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
TNSFDSIEKLLFEACSQRNPSNQVTSVARMSLLQIALQGTFLAVLGLQTA
TAKFRVTCETFASGAFMDPLEYPGKRSSHRHDIGGSLGFNANRVNAKAMQ
LNVSTCDILGDFSNYWAPTFYFHEGQKKIPLVAHFQAYYEAEPTDVSKAD
AAVLAQPLSMIIG
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mRNA from alignment at P-wetherbeei_contig9743:201..1730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9743.1.1 ID=mRNA_P-wetherbeei_contig9743.1.1|Name=mRNA_P-wetherbeei_contig9743.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1530bp|location=Sequence derived from alignment at P-wetherbeei_contig9743:201..1730+ (Phaeothamnion wetherbeei SAG_119_79)
ACCAACAGTTTCGACTCCATTGAAAAGTTGCTTTTTGAAGCGTGTAGCCA
AAGGAATCCTTCAAATCAGGTGACAAGCGTTGCACGGTGAGAAAACCTGA
GAGACACCCTTCCGCGCTCAGTTAGGCAGCCGCCTTCCGTCAAAACCCCC
TTTAGCTGAGGCTAAGAGAACGCGTGGCATCCCAGCATTGTCGCACCTGG
GTTTCTTCCTCCCAAGGAGGCAATACTGTACCCTTTGCTTCCATGACGTG
TGAGCAGAAAGGTCTGCCTTTTCAATCATGACCGAAGGAAAGGAAGTTTT
CGTGCCGACGAGGGCGGAAGGGCCTTGCTCTACACCCGATACAGGTCGAA
GTGTTACTCACGTCTCTCTCTCAATCGTCGTCACCATGCTTCGCCCGTTG
CTTTTGACCCCTCGGATTCGCACGCTTGCCGCTGCAGAATGTCGCTGCTT
CAGATAGCGTTACAGGGCACCTTTTTGGCTGTGCTGGGCCTCCAAACTGC
AACTGCCAAATTCCGTGTCACCTGCGAAACCTTCGCCTCGGGGGCATTCA
TGGATCCGCTCGAATACCCCGGAAAACGGAGCTCGCACCGGTAAGCCTGA
TCGCTTCTTCACTTCGATTGACTGGGATGGTGACAAGGCAGCTGGAAGGC
AGCTTGTGTGGGTTTGTGAAGGGGAATGTTGGAAGAGTGGAAAGCTGGGA
GCATGTCGGGTCGTCCGAGGAAGGGCGCTGTTCTGCTCGCCGTCGCACAT
TGGACTGACAACTCCGATAGCGTTTCGGTGTTAAAGTATGAACAAATGCG
CCTCGCTAGTCCCATGACTGCAGTGATGGGAGGATGAGGCTGCTGGCTTG
AGGCCTCTCTTTCGGAGCGGTTTTGGTCAGGCTGCAGTTCCCTTTGTCCT
GCTTCTCTTAGTTTTGTTATTCGTTTGCTTCTTTCCCATGGATCAGGCAC
GACATCGGCGGCTCTCTGGGATTCAACGCGAACCGTGTGAATGCCAAGGC
GATGCAACTGAACGTCAGTACATGCGACATTTTAGGAGATTTTAGGTGAG
TCTCCTGGTATCTTGCCCGACATGGTCCGGCAACAGGCGGAAAAAATACA
GTCCAAATCATATGCCATGGTGGCCAACTGCCGATCCGAGCACTTTTCTG
GTGTCGGGTCTAGACATGTAAGAAAGAACGGCGGGATGGCTTTGGAGAAA
GAGCGGACAGGAAGAAAAGTCCGCCAACTGAGACGAGCTCTCGAGTTACC
GCTAAGCGCGGCACGGCCTCTATATCCCCAATCCGTTGCGTTAAAAATCC
TCTCCTCTACCTTAAACCGCCCCTTATTTTCCCGCTCCATCGCCCGCAAC
CCCTTGGCCTTTTTTGGACCGATGGCAGCAACTATTGGGCGCCAACATTC
TACTTCCACGAGGGGCAGAAGAAGATCCCGCTGGTCGCCCACTTTCAGGC
CTATTACGAAGCGGAACCCACCGACGTCAGCAAAGCCGACGCCGCTGTCT
TGGCCCAGCCGCTGTCCATGATCATCGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9743:201..1730+

>mRNA_P-wetherbeei_contig9743.1.1 ID=mRNA_P-wetherbeei_contig9743.1.1|Name=mRNA_P-wetherbeei_contig9743.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig9743:201..1730+ (Phaeothamnion wetherbeei SAG_119_79)
ACCAACAGTTTCGACTCCATTGAAAAGTTGCTTTTTGAAGCGTGTAGCCA
AAGGAATCCTTCAAATCAGGTGACAAGCGTTGCACGAATGTCGCTGCTTC
AGATAGCGTTACAGGGCACCTTTTTGGCTGTGCTGGGCCTCCAAACTGCA
ACTGCCAAATTCCGTGTCACCTGCGAAACCTTCGCCTCGGGGGCATTCAT
GGATCCGCTCGAATACCCCGGAAAACGGAGCTCGCACCGGCACGACATCG
GCGGCTCTCTGGGATTCAACGCGAACCGTGTGAATGCCAAGGCGATGCAA
CTGAACGTCAGTACATGCGACATTTTAGGAGATTTTAGCAACTATTGGGC
GCCAACATTCTACTTCCACGAGGGGCAGAAGAAGATCCCGCTGGTCGCCC
ACTTTCAGGCCTATTACGAAGCGGAACCCACCGACGTCAGCAAAGCCGAC
GCCGCTGTCTTGGCCCAGCCGCTGTCCATGATCATCGGC
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