mRNA_P-wetherbeei_contig9714.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9714.2.1
Unique NamemRNA_P-wetherbeei_contig9714.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9714.2.1 vs. uniprot
Match: A0A2E2BEN9_9GAMM (DNA_pol_A_exoN domain-containing protein n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A2E2BEN9_9GAMM)

HSP 1 Score: 280 bits (717), Expect = 2.670e-85
Identity = 141/300 (47.00%), Postives = 202/300 (67.33%), Query Frame = 1 
Query:    1 TSAEAKAEIGRTAFGIIARDFSAAVARGKTAQGAGLARQGIAAWQTLPPEDKKDQFNFAVLLEMRSLVDPDPDAVLKALDQIEQK-------------GNLSNDIQRALVWSRLQLFDRMNNSAKSEEYIRKLAAVGIPTWQVEYLYPWIRDRKDIEQRMKLAGLVRPAVKNQPEMDRRFAMLIIEDLLIKKDATTANEQARVFIKQYPKSGDAWRLLARSSEAVDQPFEADRAWNVITDKAVPTMPIWWEGMLSRVRIRTKSNRPDEACPLLKQLEKQQSYLPAEFKAEFSAARGGAQC 861
            +S + + ++ RTAF +IA++FSA V R K  +   LA+QG+ A+  LP  D+ + +NFAVLLEMRSL+DP P+ VLKALD+IEQK              ++S DI+RAL+WSRL L++R+ +  +   ++ +LAA GIP+WQ+E+LYP+I D  DI QRM+LA LV  +VK QPEMDRRF +LIIE  L       A   A++F +++  SGD WRL A++++A+ +PFE+DRAW  ITDKA+P M +WWEGM+ R R+R + NRP+E C L+ +  +   YLP++ K E+ A      C
Sbjct:  459 SSEKFEGDVERTAFYLIAKEFSAKVTRSKIEEATALAKQGVVAFGRLPKSDRANAYNFAVLLEMRSLIDPKPEEVLKALDKIEQKMAEEAAELEIPVEQHVSLDIRRALIWSRLYLYNRLGDYDRILAFMTQLAAKGIPSWQIEFLYPFIADWHDISQRMELARLVHDSVKRQPEMDRRFRVLIIEGELDSGRPEVAYAAAKLFTQEHVSSGDGWRLFAKTADAMGKPFESDRAWKAITDKAIPPMDVWWEGMIGRARLRXEGNRPEEGCXLIXETVRSIKYLPSKLKTEYDAVSXSLDC 758
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9714.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E2BEN9_9GAMM2.670e-8547.00DNA_pol_A_exoN domain-containing protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9714contigP-wetherbeei_contig9714:1592..2476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size885
Hectar predicted targeting categoryother localisation
Exons1
Cds size885
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187106.9944851-CDS-P-wetherbeei_contig9714:1591..24761683187106.9944851-CDS-P-wetherbeei_contig9714:1591..2476Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9714 1592..2476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9714.2.1prot_P-wetherbeei_contig9714.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9714 1592..2476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9714.2.1

>prot_P-wetherbeei_contig9714.2.1 ID=prot_P-wetherbeei_contig9714.2.1|Name=mRNA_P-wetherbeei_contig9714.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=295bp
TSAEAKAEIGRTAFGIIARDFSAAVARGKTAQGAGLARQGIAAWQTLPPE
DKKDQFNFAVLLEMRSLVDPDPDAVLKALDQIEQKGNLSNDIQRALVWSR
LQLFDRMNNSAKSEEYIRKLAAVGIPTWQVEYLYPWIRDRKDIEQRMKLA
GLVRPAVKNQPEMDRRFAMLIIEDLLIKKDATTANEQARVFIKQYPKSGD
AWRLLARSSEAVDQPFEADRAWNVITDKAVPTMPIWWEGMLSRVRIRTKS
NRPDEACPLLKQLEKQQSYLPAEFKAEFSAARGGAQCATVRAAN*
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mRNA from alignment at P-wetherbeei_contig9714:1592..2476-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9714.2.1 ID=mRNA_P-wetherbeei_contig9714.2.1|Name=mRNA_P-wetherbeei_contig9714.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=885bp|location=Sequence derived from alignment at P-wetherbeei_contig9714:1592..2476- (Phaeothamnion wetherbeei SAG_119_79)
ACCTCGGCCGAGGCTAAGGCTGAGATCGGGCGCACCGCCTTCGGCATCAT
CGCGCGGGACTTCAGTGCGGCGGTGGCACGTGGCAAGACCGCGCAGGGCG
CCGGCCTCGCGCGCCAGGGTATAGCTGCCTGGCAAACGCTGCCGCCGGAA
GACAAGAAGGACCAGTTCAATTTTGCTGTGCTGCTGGAGATGCGTTCGCT
GGTTGACCCCGACCCGGACGCGGTGCTGAAGGCGCTGGATCAGATTGAAC
AGAAAGGCAATCTCAGCAACGACATTCAACGGGCCTTGGTGTGGTCGCGT
CTGCAATTGTTCGATCGTATGAACAATAGCGCGAAGAGCGAGGAATATAT
CCGCAAGCTTGCCGCGGTCGGCATTCCGACCTGGCAGGTCGAATATCTTT
ATCCCTGGATCAGGGACCGCAAGGATATTGAGCAGCGCATGAAGCTTGCT
GGTCTAGTACGTCCGGCGGTCAAGAATCAGCCCGAGATGGATAGACGCTT
CGCGATGCTGATCATCGAAGACCTGCTGATCAAGAAAGACGCCACCACCG
CCAACGAACAGGCACGCGTCTTCATCAAGCAATATCCGAAGTCGGGCGAT
GCGTGGCGTCTGCTGGCGCGCAGCTCGGAGGCGGTCGATCAGCCCTTTGA
GGCCGATCGCGCCTGGAATGTGATTACCGACAAGGCGGTGCCGACCATGC
CCATCTGGTGGGAAGGCATGCTGAGCCGCGTGCGCATACGGACCAAATCC
AATCGTCCCGATGAGGCCTGTCCGCTGCTGAAGCAACTTGAAAAACAGCA
GAGTTACTTGCCCGCGGAATTCAAAGCTGAATTCAGCGCCGCGCGGGGCG
GCGCGCAATGCGCGACAGTGCGAGCGGCGAATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9714:1592..2476-

>mRNA_P-wetherbeei_contig9714.2.1 ID=mRNA_P-wetherbeei_contig9714.2.1|Name=mRNA_P-wetherbeei_contig9714.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=885bp|location=Sequence derived from alignment at P-wetherbeei_contig9714:1592..2476- (Phaeothamnion wetherbeei SAG_119_79)
ACCTCGGCCGAGGCTAAGGCTGAGATCGGGCGCACCGCCTTCGGCATCAT
CGCGCGGGACTTCAGTGCGGCGGTGGCACGTGGCAAGACCGCGCAGGGCG
CCGGCCTCGCGCGCCAGGGTATAGCTGCCTGGCAAACGCTGCCGCCGGAA
GACAAGAAGGACCAGTTCAATTTTGCTGTGCTGCTGGAGATGCGTTCGCT
GGTTGACCCCGACCCGGACGCGGTGCTGAAGGCGCTGGATCAGATTGAAC
AGAAAGGCAATCTCAGCAACGACATTCAACGGGCCTTGGTGTGGTCGCGT
CTGCAATTGTTCGATCGTATGAACAATAGCGCGAAGAGCGAGGAATATAT
CCGCAAGCTTGCCGCGGTCGGCATTCCGACCTGGCAGGTCGAATATCTTT
ATCCCTGGATCAGGGACCGCAAGGATATTGAGCAGCGCATGAAGCTTGCT
GGTCTAGTACGTCCGGCGGTCAAGAATCAGCCCGAGATGGATAGACGCTT
CGCGATGCTGATCATCGAAGACCTGCTGATCAAGAAAGACGCCACCACCG
CCAACGAACAGGCACGCGTCTTCATCAAGCAATATCCGAAGTCGGGCGAT
GCGTGGCGTCTGCTGGCGCGCAGCTCGGAGGCGGTCGATCAGCCCTTTGA
GGCCGATCGCGCCTGGAATGTGATTACCGACAAGGCGGTGCCGACCATGC
CCATCTGGTGGGAAGGCATGCTGAGCCGCGTGCGCATACGGACCAAATCC
AATCGTCCCGATGAGGCCTGTCCGCTGCTGAAGCAACTTGAAAAACAGCA
GAGTTACTTGCCCGCGGAATTCAAAGCTGAATTCAGCGCCGCGCGGGGCG
GCGCGCAATGCGCGACAGTGCGAGCGGCGAATTGA
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