mRNA_P-wetherbeei_contig9712.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9712.1.1
Unique NamemRNA_P-wetherbeei_contig9712.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9712.1.1 vs. uniprot
Match: A0A7S0G3J6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G3J6_9RHOD)

HSP 1 Score: 148 bits (373), Expect = 1.110e-43
Identity = 67/105 (63.81%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:    4 GWNPIIQPPRGPRRKRGLFSTRSPHRPNPIALSALRITSVDLMQRTINVAALDLLDGTPVLDVKPYVPYADAFPDARAGWISELPADPAEERDYLPYDPPPPFLQ 318
            GWNP++ PPRGPR K+G+F+TR+PHRPNPI+LSAL+ITSVD   R + V  LDLLDGTP+LD+KPYVPYADAFP+A AGW+ ++  +  +  DYL Y PPPP L+
Sbjct:   29 GWNPLVTPPRGPRTKQGIFATRAPHRPNPISLSALKITSVDYKNRIVKVKGLDLLDGTPILDIKPYVPYADAFPNAAAGWLDDI--EDMKGPDYLSYSPPPPHLR 131
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BLAST of mRNA_P-wetherbeei_contig9712.1.1 vs. uniprot
Match: A0A7S3A0C0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A0C0_9RHOD)

HSP 1 Score: 145 bits (367), Expect = 1.210e-41
Identity = 66/105 (62.86%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:    4 GWNPIIQPPRGPRRKRGLFSTRSPHRPNPIALSALRITSVDLMQRTINVAALDLLDGTPVLDVKPYVPYADAFPDARAGWISELPADPAEERDYLPYDPPPPFLQ 318
            GWNP++ PPRGPR K+G+F+TR+PHRPNPI+LSAL+IT VD   R ++V  LDLLDGTP+LD+KPYVPYADAFP+A AGW+  +  +  +  DYL Y PPPP L+
Sbjct:  118 GWNPLVTPPRGPRTKQGIFATRAPHRPNPISLSALKITRVDYKNRIVHVKGLDLLDGTPILDIKPYVPYADAFPNAAAGWLDNI--EDMKGPDYLAYSPPPPHLR 220
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BLAST of mRNA_P-wetherbeei_contig9712.1.1 vs. uniprot
Match: A0A7S0T3K0_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T3K0_9RHOD)

HSP 1 Score: 141 bits (355), Expect = 1.350e-40
Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:    4 GWNPIIQPPRGPRRKRGLFSTRSPHRPNPIALSALRITSVDLMQRTINVAALDLLDGTPVLDVKPYVPYADAFPDARAGWISELPADPAEER-DYLPYDPPP 306
            GWNP+I+PPRGPRRK+G+F+TRSPHRPNP++LSALRIT+VD   R ++V  +DLLDGTPVLD+KPYVPY+DAFP A AGW+ EL  D A +  D L Y PPP
Sbjct:   77 GWNPLIRPPRGPRRKQGVFATRSPHRPNPLSLSALRITAVDEKARRVHVLGIDLLDGTPVLDIKPYVPYSDAFPAAAAGWLDEL--DMAMDGPDRLDYSPPP 176
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BLAST of mRNA_P-wetherbeei_contig9712.1.1 vs. uniprot
Match: A0A835YNQ9_9STRA (TsaA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNQ9_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.710e-40
Identity = 68/102 (66.67%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    1 KGWNPIIQPPRGPRRKRGLFSTRSPHRPNPIALSALRITSVDLMQRTINVAALDLLDGTPVLDVKPYVPYADAFPDARAGWISELPADPAEERDYLPYDPPP 306
            +GWNP ++PPRGPR KRGLFSTRSPHRPN IALSA++I SVD    T+ V  LDLLDGTP+LD+KPYVPY DAFP A+ GW+ EL +   +E DYLP  PPP
Sbjct:   70 QGWNPKVKPPRGPRVKRGLFSTRSPHRPNSIALSAVKIVSVDPKGLTVTVEGLDLLDGTPILDIKPYVPYCDAFPGAKTGWLEELSS--IDEVDYLPSKPPP 169
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BLAST of mRNA_P-wetherbeei_contig9712.1.1 vs. uniprot
Match: A0A7S1WEL1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WEL1_ALECA)

HSP 1 Score: 134 bits (336), Expect = 3.260e-37
Identity = 64/106 (60.38%), Postives = 81/106 (76.42%), Query Frame = 1 
Query:    1 KGWNPIIQPPRGPRRKRGLFSTRSPHRPNPIALSALRITSVDLMQRTINVAALDLLDGTPVLDVKPYVPYADAFPDARAGWISELPADPAEERDYLPYDPPPPFLQ 318
            +GW+P + PPRG R+KRGLF+TRSPHRPN I+LSA ++ SVD   +T+ V  LDLLDGTPVLDVKPYVPY D++P ARAGWI E+  +  +  D L Y PPPP ++
Sbjct:  112 EGWSPRVTPPRGARQKRGLFATRSPHRPNHISLSACQLLSVDAKAKTLTVRGLDLLDGTPVLDVKPYVPYCDSYPSARAGWIDEVEGE-HDGPDRLAYSPPPPHIR 216
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BLAST of mRNA_P-wetherbeei_contig9712.1.1 vs. uniprot
Match: R1DL83_EMIHU (TsaA-like domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DL83_EMIHU)

HSP 1 Score: 134 bits (337), Expect = 1.680e-36
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 1 
Query:    4 GWNPIIQPPRGPRR-KRGLFSTRSPHRPNPIALSALRITSVDLMQRTINVAALDLLDGTPVLDVKPYVPYADAFPDARAGWISELPADPAEERDYLPYDPPPPFL 315
            GW P+++PPRGPRR K+G+F+TR+PHRPNPIALSAL++  VD     + V  LDLLDGTPVLD+KPYVPYAD+FP A+AGW+ E+ A    E D L Y PPPP L
Sbjct:  114 GWKPLVRPPRGPRRAKQGVFATRAPHRPNPIALSALKVVEVDEAALRVTVEGLDLLDGTPVLDLKPYVPYADSFPRAKAGWVDEVRA----EEDRLGYWPPPPHL 214
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BLAST of mRNA_P-wetherbeei_contig9712.1.1 vs. uniprot
Match: A0A0F6SI95_9DELT (TsaA-like domain-containing protein n=2 Tax=Sandaracinus amylolyticus TaxID=927083 RepID=A0A0F6SI95_9DELT)

HSP 1 Score: 128 bits (322), Expect = 1.860e-35
Identity = 60/94 (63.83%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 KGWNPIIQPPRGPRRKRGLFSTRSPHRPNPIALSALRITSVDLMQRTINVAALDLLDGTPVLDVKPYVPYADAFPDARAGWISELPADPAEERD 282
            +GW+ +++PPRGPR KRG+ +TRSPHRPNPI LSA+R+  V+   RT+ V  LDLLDGTPVLD+KPYVPYADAFP++RAGW+ E+ A   E+RD
Sbjct:   93 EGWSAMVRPPRGPRVKRGVLATRSPHRPNPIGLSAVRLLGVE--GRTLRVHGLDLLDGTPVLDIKPYVPYADAFPESRAGWVDEVDAMEREQRD 184
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BLAST of mRNA_P-wetherbeei_contig9712.1.1 vs. uniprot
Match: A0A7S3XP01_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP01_HETAK)

HSP 1 Score: 129 bits (325), Expect = 3.330e-35
Identity = 68/110 (61.82%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:    1 KGWNPIIQPPRGPR-RKRGLFSTRSPHRPNPIALSALRITSVDLMQRTINVAALDLLDGTPVLDVKPYVPYADAFPDARAGWISE---LPADPAEERDYLPYDPPPPFLQ 318
            KGWNP ++PPRG    K GLF+TRSPHRPNPI LSA +I SVD  Q  + VA LDLLDGTPVLD+KPYVPYADAFP ARAGW++    +  D   E D L Y PPP  ++
Sbjct:  139 KGWNPKVKPPRGKHDAKLGLFATRSPHRPNPIGLSACKIHSVDHRQGVVRVAGLDLLDGTPVLDLKPYVPYADAFPHARAGWLNSSDRVTVDDLAEADRLDYWPPPKHIK 248
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BLAST of mRNA_P-wetherbeei_contig9712.1.1 vs. uniprot
Match: A0A7S2WDG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDG7_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.380e-35
Identity = 63/106 (59.43%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    7 WNPIIQPPRGPRR--KRGLFSTRSPHRPNPIALSALRITSVDLMQRTINVAALDLLDGTPVLDVKPYVPYADAFPDARAGWISELPADPAEERDYLPYDPPPPFLQ 318
            W P++QPPRG  R  K+GLF+TR+PHRPNP+ LSALR+T VD  Q  I+V  LDLLDGTPVLDVKPY+   D+FP+A+AGW+  L  +  +  DYLPY PPP  L+
Sbjct:   86 WKPLVQPPRGATRAPKQGLFATRAPHRPNPLGLSALRVTGVDPKQLQIHVLGLDLLDGTPVLDVKPYIAAYDSFPEAKAGWLDSLEEE-TQAPDYLPYYPPPRHLR 190
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BLAST of mRNA_P-wetherbeei_contig9712.1.1 vs. uniprot
Match: A0A2V3J262_9FLOR (tRNA (Adenine(37)-N6)-methyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J262_9FLOR)

HSP 1 Score: 128 bits (322), Expect = 1.720e-34
Identity = 63/105 (60.00%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:    1 KGWNPIIQPPRGPRRKRGLFSTRSPHRPNPIALSALRITSVDLMQRTINVAALDLLDGTPVLDVKPYVPYADAFPDARAGWISELPADPAEERDYLPYDPPPPFL 315
            +G+NP++ PPRGPR+K+G+F+TRSPHRPN I LS +RIT VD  +  I+V  +DLLDGTPVLDVKPYVPY D+FP A+AGW+  L  D  +  D L Y PPP  L
Sbjct:  134 QGFNPLVTPPRGPRKKQGVFATRSPHRPNSIGLSCIRITGVDEKKGLIHVLGVDLLDGTPVLDVKPYVPYCDSFPKAKAGWLDTLRED-MKAPDVLGYYPPPAHL 237
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9712.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0G3J6_9RHOD1.110e-4363.81Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3A0C0_9RHOD1.210e-4162.86Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S0T3K0_9RHOD1.350e-4067.65Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A835YNQ9_9STRA1.710e-4066.67TsaA-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7S1WEL1_ALECA3.260e-3760.38Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
R1DL83_EMIHU1.680e-3662.86TsaA-like domain-containing protein n=1 Tax=Emilia... [more]
A0A0F6SI95_9DELT1.860e-3563.83TsaA-like domain-containing protein n=2 Tax=Sandar... [more]
A0A7S3XP01_HETAK3.330e-3561.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2WDG7_9STRA7.380e-3559.43Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A2V3J262_9FLOR1.720e-3460.00tRNA (Adenine(37)-N6)-methyltransferase n=1 Tax=Gr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9712contigP-wetherbeei_contig9712:33..779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2903.EOD11616
Preferred nameNDUFA2
PFAMsL51_S25_CI-B8
Model size321
Max annot lvl2759|Eukaryota
KEGG koko:K03946
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Exons3
Evalue2.75e-37
EggNOG OGsCOG1720@1|root,KOG3446@1|root,KOG2942@2759|Eukaryota,KOG3446@2759|Eukaryota
Descriptionmitochondrial respiratory chain complex I assembly
Cds size321
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187106.8637414-CDS-P-wetherbeei_contig9712:32..1041683187106.8637414-CDS-P-wetherbeei_contig9712:32..104Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9712 33..104 +
1683187106.8750896-CDS-P-wetherbeei_contig9712:237..2561683187106.8750896-CDS-P-wetherbeei_contig9712:237..256Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9712 238..256 +
1683187106.8837082-CDS-P-wetherbeei_contig9712:549..7791683187106.8837082-CDS-P-wetherbeei_contig9712:549..779Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9712 550..779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9712.1.1prot_P-wetherbeei_contig9712.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9712 33..779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9712.1.1

>prot_P-wetherbeei_contig9712.1.1 ID=prot_P-wetherbeei_contig9712.1.1|Name=mRNA_P-wetherbeei_contig9712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
KGWNPIIQPPRGPRRKRGLFSTRSPHRPNPIALSALRITSVDLMQRTINV
AALDLLDGTPVLDVKPYVPYADAFPDARAGWISELPADPAEERDYLPYDP
PPPFLQ*
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mRNA from alignment at P-wetherbeei_contig9712:33..779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9712.1.1 ID=mRNA_P-wetherbeei_contig9712.1.1|Name=mRNA_P-wetherbeei_contig9712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=747bp|location=Sequence derived from alignment at P-wetherbeei_contig9712:33..779+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGGATGGAATCCCATCATTCAGCCTCCGAGAGGGCCTCGACGAAAGCG
CGGACTGTTTTCGACACGCTCGGTGAGATTGCTCTCTCCACGCACTGCCT
ATTCTCTTCCCGCTGAGTTTAATGCCTGGCTGCGACTTCCCGCGCAATGA
ATCTCTCCTTGCCGCCGTCGCTGCTCTCCGTACACGACATTGCCATGGCG
CGCAGCCGCATCGCCCCAACCCAAGTGAGCGCAAGAGTCCGGGCGAACAG
CCAGCCATCTGCTTTCCGTACACTCCATTTTTGATACGGGCCTGTACGCG
TTATAAAATGTTATGGTTCTGTTTTTTGGTGATGGGCGGCTCAGACGCCA
GCGTGGGCTAAAAAGGAGGGAAAGAGAATCGCCATTGAGCGTTTGTAGAA
GGTGCTTTCCTTGCTGTGTCGGAACCTACTGCTGACTGATTAGAGGAAAT
GAAATTATTCCTTCTTGCCATTTGCTTGTTGCGCGCGTGACGATCGCCCC
CACTCTCCGGCTCACAGTCGCCCTATCGGCTCTGAGGATAACGTCGGTCG
ATTTGATGCAACGGACGATAAACGTAGCGGCTCTCGATCTGCTGGATGGG
ACCCCCGTCCTCGATGTCAAGCCCTACGTGCCGTACGCGGATGCCTTTCC
AGATGCGAGGGCCGGGTGGATCAGCGAGTTGCCGGCGGATCCTGCCGAAG
AGAGGGACTATTTGCCGTACGACCCGCCGCCGCCGTTCCTACAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9712:33..779+

>mRNA_P-wetherbeei_contig9712.1.1 ID=mRNA_P-wetherbeei_contig9712.1.1|Name=mRNA_P-wetherbeei_contig9712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig9712:33..779+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGGATGGAATCCCATCATTCAGCCTCCGAGAGGGCCTCGACGAAAGCG
CGGACTGTTTTCGACACGCTCGCCGCATCGCCCCAACCCAATCGCCCTAT
CGGCTCTGAGGATAACGTCGGTCGATTTGATGCAACGGACGATAAACGTA
GCGGCTCTCGATCTGCTGGATGGGACCCCCGTCCTCGATGTCAAGCCCTA
CGTGCCGTACGCGGATGCCTTTCCAGATGCGAGGGCCGGGTGGATCAGCG
AGTTGCCGGCGGATCCTGCCGAAGAGAGGGACTATTTGCCGTACGACCCG
CCGCCGCCGTTCCTACAATAA
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