mRNA_P-wetherbeei_contig970.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig970.2.1
Unique NamemRNA_P-wetherbeei_contig970.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig970.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig970contigP-wetherbeei_contig970:1693..3702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1688
Hectar predicted targeting categoryother localisation
Exons2
Cds size1671
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187106.1294384-UTR-P-wetherbeei_contig970:1692..17071683187106.1294384-UTR-P-wetherbeei_contig970:1692..1707Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig970 1693..1707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187106.1388934-CDS-P-wetherbeei_contig970:1707..28111683187106.1388934-CDS-P-wetherbeei_contig970:1707..2811Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig970 1708..2811 +
1683187106.1474223-CDS-P-wetherbeei_contig970:3135..37021683187106.1474223-CDS-P-wetherbeei_contig970:3135..3702Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig970 3136..3702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig970.2.1prot_P-wetherbeei_contig970.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig970 1708..3702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig970.2.1

>prot_P-wetherbeei_contig970.2.1 ID=prot_P-wetherbeei_contig970.2.1|Name=mRNA_P-wetherbeei_contig970.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=557bp
MMADRPPESSKILIKRADEVAEALESIAPPLGNRQFLSLAILYLRQATAS
NASAWKEIGINYVRDEVLRRFEGGKQPPGAAWLAYVVHGLLSGKTVARTQ
IVADFGLAIAEAEDGAGSMVLDACLQGSSQLEINDLGCLAAQLLTGLLDE
ALGAEQGSQRGFRSRVRLCCDLSAAVLEQSCGGAPWAALCDVAVRILSPK
EGREADGRPTYLRDAFVSTVLEALYGTGSPSSAQAADLEATAALEAVWTT
VLALAGDHDTLPTALAALCLLEAPATAGLSPPPPLRAPLWRTIWLALSRP
EDVCRRRAVFLVQRALEWTAATAAASAGAAGGARWGGMIARTRLAQWERY
IQVLETLDNESHNNLIEQVFPALKEFCAGVCTPGVGIVGDPDNDKTGGCG
NGSGSSSSGSAVPLPHSPRRERYEQQRWPPSLEAFGWSGILLSRAFAQTA
QGPRRRAVMSVLSGELSFGDVAALDHGWVAATVFPGFEEVAATGHGAAAR
DGAANVAAAWLRRYAAAIGPARHRALVRLACEALQKMRAQAAMLAVVNGL
WLEPVPI
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mRNA from alignment at P-wetherbeei_contig970:1693..3702+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig970.2.1 ID=mRNA_P-wetherbeei_contig970.2.1|Name=mRNA_P-wetherbeei_contig970.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2010bp|location=Sequence derived from alignment at P-wetherbeei_contig970:1693..3702+ (Phaeothamnion wetherbeei SAG_119_79)
GGGAAAGGGAATGGCATGATGGCGGACCGGCCTCCAGAGTCAAGCAAGAT
TCTGATAAAGCGTGCAGATGAGGTCGCCGAAGCCCTAGAATCCATCGCGC
CGCCTTTGGGGAATCGCCAATTTCTCTCCCTCGCCATCCTCTACCTACGC
CAAGCTACAGCTTCCAACGCCTCTGCTTGGAAGGAAATTGGAATCAATTA
TGTACGAGACGAGGTGCTGCGGCGATTTGAAGGCGGAAAGCAACCACCGG
GCGCGGCATGGCTCGCTTATGTGGTCCACGGCCTTCTCTCAGGGAAGACT
GTTGCGAGGACTCAGATCGTTGCAGATTTCGGGCTCGCCATCGCCGAAGC
AGAGGACGGCGCAGGTTCGATGGTACTGGACGCCTGCCTTCAGGGTTCCT
CGCAGCTCGAGATAAATGACCTTGGTTGTCTCGCTGCGCAGCTTTTAACA
GGGCTTCTCGACGAGGCGCTCGGCGCAGAGCAAGGCTCACAGCGCGGCTT
CCGCAGCAGGGTGCGCCTCTGCTGCGACTTGTCTGCGGCGGTGCTCGAGC
AATCCTGCGGCGGAGCGCCGTGGGCAGCCCTCTGCGATGTTGCCGTGCGC
ATTTTGTCGCCGAAAGAGGGCCGCGAGGCCGACGGCAGGCCCACGTATCT
CCGCGACGCCTTCGTATCGACCGTTCTCGAGGCGCTCTACGGCACCGGGT
CGCCATCGTCGGCACAGGCAGCGGATTTGGAAGCTACGGCGGCCCTTGAA
GCAGTCTGGACGACCGTGTTGGCGCTGGCCGGCGATCACGACACGCTGCC
GACGGCGCTGGCGGCGCTCTGCTTGCTAGAGGCGCCGGCCACCGCCGGAC
TCAGCCCGCCGCCGCCGCTACGCGCGCCGCTCTGGCGCACCATCTGGCTG
GCGCTGTCCCGGCCGGAAGACGTCTGCCGCCGCCGGGCCGTCTTTCTCGT
GCAGCGGGCGCTAGAGTGGACCGCCGCCACCGCCGCCGCCAGTGCCGGCG
CAGCCGGCGGCGCCCGTTGGGGCGGTATGATAGCACGGACGAGGCTGGCG
CAGTGGGAGCGGTATATCCAGGTGCTCGAGACGCTCGACAACGAGAGCCA
CAACAACTTGATTGAGCAGGTTGGCAGAGGTTATTGGATGGTGCATTTAA
CGCTGTCCAGGTCTCGTGCCTTTGGCGCAGCGTTTACGTTGCACGTGCAG
CCTGAGAACTTGAATGAATAACATAGGTGCCCTCGACGCTTTGCGAAATG
TCAATTGCGGATCTCATGTTACTGAAGATCAATTTAAAAACTTTCTTCCA
GTATGTCTCATTGTTGCCAGGTTTTCACTTGCTTTTTTTCAGCACCCGTT
GTTGGTGCCAGTCCTTCAACAATTTGCTGCTTATACGACCGTCTTTTTTG
CTTCATTTCTCATTGTTCCACCTTCGATTCTTGAACCATGCAGGTTTTTC
CCGCGTTGAAGGAGTTCTGTGCGGGCGTTTGTACTCCCGGCGTTGGCATT
GTCGGCGATCCCGACAACGACAAAACCGGCGGCTGCGGCAATGGCAGCGG
CAGTAGCAGCAGCGGCAGTGCAGTCCCGCTTCCTCATTCGCCGCGGCGAG
AGCGATACGAGCAGCAGCGCTGGCCGCCGAGCCTGGAGGCTTTCGGCTGG
TCCGGCATCCTCCTCTCGCGCGCCTTCGCGCAGACGGCGCAGGGGCCACG
CCGACGCGCCGTCATGAGCGTGCTGTCCGGCGAGCTCTCATTCGGCGACG
TCGCTGCCCTCGACCACGGGTGGGTGGCGGCGACTGTCTTCCCAGGATTC
GAGGAAGTCGCCGCAACCGGCCATGGCGCGGCAGCCCGCGACGGCGCTGC
GAACGTCGCCGCTGCGTGGCTGCGGCGGTACGCGGCGGCAATCGGCCCGG
CCCGCCACCGCGCGCTCGTCCGGCTGGCGTGTGAGGCACTGCAGAAGATG
CGTGCTCAGGCGGCCATGTTGGCCGTCGTCAATGGGCTCTGGCTGGAGCC
GGTGCCGATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig970:1693..3702+

>mRNA_P-wetherbeei_contig970.2.1 ID=mRNA_P-wetherbeei_contig970.2.1|Name=mRNA_P-wetherbeei_contig970.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1671bp|location=Sequence derived from alignment at P-wetherbeei_contig970:1693..3702+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGCGGACCGGCCTCCAGAGTCAAGCAAGATTCTGATAAAGCGTGC
AGATGAGGTCGCCGAAGCCCTAGAATCCATCGCGCCGCCTTTGGGGAATC
GCCAATTTCTCTCCCTCGCCATCCTCTACCTACGCCAAGCTACAGCTTCC
AACGCCTCTGCTTGGAAGGAAATTGGAATCAATTATGTACGAGACGAGGT
GCTGCGGCGATTTGAAGGCGGAAAGCAACCACCGGGCGCGGCATGGCTCG
CTTATGTGGTCCACGGCCTTCTCTCAGGGAAGACTGTTGCGAGGACTCAG
ATCGTTGCAGATTTCGGGCTCGCCATCGCCGAAGCAGAGGACGGCGCAGG
TTCGATGGTACTGGACGCCTGCCTTCAGGGTTCCTCGCAGCTCGAGATAA
ATGACCTTGGTTGTCTCGCTGCGCAGCTTTTAACAGGGCTTCTCGACGAG
GCGCTCGGCGCAGAGCAAGGCTCACAGCGCGGCTTCCGCAGCAGGGTGCG
CCTCTGCTGCGACTTGTCTGCGGCGGTGCTCGAGCAATCCTGCGGCGGAG
CGCCGTGGGCAGCCCTCTGCGATGTTGCCGTGCGCATTTTGTCGCCGAAA
GAGGGCCGCGAGGCCGACGGCAGGCCCACGTATCTCCGCGACGCCTTCGT
ATCGACCGTTCTCGAGGCGCTCTACGGCACCGGGTCGCCATCGTCGGCAC
AGGCAGCGGATTTGGAAGCTACGGCGGCCCTTGAAGCAGTCTGGACGACC
GTGTTGGCGCTGGCCGGCGATCACGACACGCTGCCGACGGCGCTGGCGGC
GCTCTGCTTGCTAGAGGCGCCGGCCACCGCCGGACTCAGCCCGCCGCCGC
CGCTACGCGCGCCGCTCTGGCGCACCATCTGGCTGGCGCTGTCCCGGCCG
GAAGACGTCTGCCGCCGCCGGGCCGTCTTTCTCGTGCAGCGGGCGCTAGA
GTGGACCGCCGCCACCGCCGCCGCCAGTGCCGGCGCAGCCGGCGGCGCCC
GTTGGGGCGGTATGATAGCACGGACGAGGCTGGCGCAGTGGGAGCGGTAT
ATCCAGGTGCTCGAGACGCTCGACAACGAGAGCCACAACAACTTGATTGA
GCAGGTTTTTCCCGCGTTGAAGGAGTTCTGTGCGGGCGTTTGTACTCCCG
GCGTTGGCATTGTCGGCGATCCCGACAACGACAAAACCGGCGGCTGCGGC
AATGGCAGCGGCAGTAGCAGCAGCGGCAGTGCAGTCCCGCTTCCTCATTC
GCCGCGGCGAGAGCGATACGAGCAGCAGCGCTGGCCGCCGAGCCTGGAGG
CTTTCGGCTGGTCCGGCATCCTCCTCTCGCGCGCCTTCGCGCAGACGGCG
CAGGGGCCACGCCGACGCGCCGTCATGAGCGTGCTGTCCGGCGAGCTCTC
ATTCGGCGACGTCGCTGCCCTCGACCACGGGTGGGTGGCGGCGACTGTCT
TCCCAGGATTCGAGGAAGTCGCCGCAACCGGCCATGGCGCGGCAGCCCGC
GACGGCGCTGCGAACGTCGCCGCTGCGTGGCTGCGGCGGTACGCGGCGGC
AATCGGCCCGGCCCGCCACCGCGCGCTCGTCCGGCTGGCGTGTGAGGCAC
TGCAGAAGATGCGTGCTCAGGCGGCCATGTTGGCCGTCGTCAATGGGCTC
TGGCTGGAGCCGGTGCCGATT
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