mRNA_P-wetherbeei_contig9694.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9694.1.1
Unique NamemRNA_P-wetherbeei_contig9694.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9694.1.1 vs. uniprot
Match: A0A6H5L4D9_9PHAE (DDE-1 domain-containing protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D9_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 4.510e-60
Identity = 118/266 (44.36%), Postives = 152/266 (57.14%), Query Frame = 1
Query:    1 CFKKKRPPLHYFSQAKAWSDQRVFAVWFGRVLLPHVRRLTAKKVLLIMDNCTGHGELADPCGQVKVICLPPNCTAVHQPMDQGIIAALKLRFRTGLLYKKVATLAARGALRAAAKAMKMPAGPMGLAEGYDPHLLDAMELMKAAWGAMEEGSVARCWLKADILPLAMQAELQSLHGRGAAAGAAAPAVADLEAAIRTLRI-------RGTEAEDEDIAEALA-LHVGYGXXXXXXXXXVAQRWVQLEEEDDVAAALRSDLRGELVA 774
            CF     PL YFSQA AWSD   F  W+  V LP VRR T + VLL+MD C  HG+L D  GQV +   PPNCT+VHQP+D GIIA  K  +R  LL  K +T+     LRA AKA KM AG MGLA+G+ PH+ DA EL++ AW ++    +ARC++KA+ LP  M AEL   HG+      A P +  L   + TL         +GT+ EDEDIAE +A L +  G           Q W  +E++D+V  ALR D   ++ A
Sbjct:  228 CFNDTPSPLKYFSQANAWSDTATFRKWWCEVFLPFVRRFTHEPVLLLMDGCASHGDLVDDRGQVTIKFYPPNCTSVHQPVDLGIIAETKCNYRKELLDVKTSTMLVADTLRAEAKARKMKAGTMGLAQGHQPHVRDAAELLQKAWASVTAQDIARCFVKAETLPDEMAAELTKQHGKSQF-HVAEPTLKALTETLNTLSTSVHEAHKQGTQIEDEDIAELIAELRIEPGKPLLEEAVNAIQGWATIEDDDEVVEALREDTVEDMTA 492          
BLAST of mRNA_P-wetherbeei_contig9694.1.1 vs. uniprot
Match: A0A6H5JCF6_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF6_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 5.970e-59
Identity = 113/265 (42.64%), Postives = 153/265 (57.74%), Query Frame = 1
Query:    1 CFKKKRPPLHYFSQAKAWSDQRVFAVWFGRVLLPHVRRLTAKKVLLIMDNCTGHGELADPCGQVKVICLPPNCTAVHQPMDQGIIAALKLRFRTGLLYKKVATLAARGALRAAAKAMKMPAGPMGLAEGYDPHLLDAMELMKAAWGAMEEGSVARCWLKADILPLAMQAELQSLHGRGAA------AGAAAPAVADLEAAIRTLRIRGTEAEDEDIAEALA-LHVGYGXXXXXXXXXVAQRWVQLEEEDDVAAALRSDLRGELVA 774
            CFK    PL YFSQ  AWSD   F  W+  V LP VRR T + VLL+MD C+ H +L D  GQV V+  PP CTAVHQPMDQG+IA  K+ +R  LL  K +T+     LRA AKA KM AG MGLA+G+ PH+ DA E ++ AW ++    +ARC++KA+ LP  M AEL   HG+           A A  V  L  +++  + +G+   DE+I+E LA L++  G           Q W  +E++++V  ALR D   ++ A
Sbjct:   97 CFKNGGSPLKYFSQTNAWSDSATFLKWWLEVFLPFVRRFTHEPVLLLMDGCSSHSDLVDDRGQVTVMTYPPLCTAVHQPMDQGVIAKTKVNYRKELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHVRDAAERLQKAWASVTAQDIARCFVKAETLPEEMAAELTKQHGKTRFNVAEPDLKALAETVNTLSTSVQDAQKQGSCVVDEEISELLAELNIEPGKPVAGEAVAAIQGWATIEDDEEVVEALRLDAVEDMTA 361          
BLAST of mRNA_P-wetherbeei_contig9694.1.1 vs. uniprot
Match: A0A6H5KUT5_9PHAE (DDE-1 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT5_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.630e-57
Identity = 114/263 (43.35%), Postives = 149/263 (56.65%), Query Frame = 1
Query:    1 CFKKKRPPLHYFSQAKAWSDQRVFAVWFGRVLLPHVRRLTAKKVLLIMDNCTGHGELADPCGQVKVICLPPNCTAVHQPMDQGIIAALKLRFRTGLLYKKVATLAARGALRAAAKAMKMPAGPMGLAEGYDPHLLDAMELMKAAWGAMEEGSVARCWLKADILPLAMQAELQSLHGRGAAA------GAAAPAVADLEAAIRTLRIRGTEAEDEDIAEALA-LHVGYGXXXXXXXXXVAQRWVQLEEEDDVAAALRSDLRGEL 768
            CFK    PL Y+SQ  AWSD   F  W+ +V LP VRR T + VLL+MD C  HG+L D  GQV V   PP CT+VHQPMD GIIA  K+ FR  LL  K +T+     LRA AKA KM AG MGLA+G+ PHL DA EL+K AW ++    +ARC++KAD LP  M AEL + HG+   +       A    V  L  ++   + +G    DE+I+E  A L +  G           + W  +E++++V  ALR D   E+
Sbjct:  174 CFKSAPSPLKYYSQTNAWSDSATFLKWWLQVFLPFVRRFTHEPVLLLMDGCASHGDLVDDRGQVTVKFYPPKCTSVHQPMDLGIIAKTKVVFRKELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHLRDAAELLKKAWASITAQDIARCFVKADTLPSEMAAELTTQHGKTRFSIAEPDLKALTETVNKLSTSVGEAQKQGAGIVDEEISELFAELDIEPGKPVEEEAVSAIRGWATIEDDEEVTEALRLDAADEM 436          
BLAST of mRNA_P-wetherbeei_contig9694.1.1 vs. uniprot
Match: A0A6H5JMF1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF1_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 5.780e-56
Identity = 112/265 (42.26%), Postives = 151/265 (56.98%), Query Frame = 1
Query:    1 CFKKKRPPLHYFSQAKAWSDQRVFAVWFGRVLLPHVRRLTAKKVLLIMDNCTGHGELADPCGQVKVICLPPNCTAVHQPMDQGIIAALKLRFRTGLLYKKVATLAARGALRAAAKAMKMPAGPMGLAEGYDPHLLDAMELMKAAWGAMEEGSVARCWLKADILPLAMQAELQSLHGRGAA------AGAAAPAVADLEAAIRTLRIRGTEAEDEDIAEALA-LHVGYGXXXXXXXXXVAQRWVQLEEEDDVAAALRSDLRGELVA 774
            CF+    PL YFSQA AWSD   F  W+  V LP VRR T K VLL+MD C+ H +L D  GQV V   PP CTAVHQPMD G+IA  K+ +R  LL  K +T+     LRA AKA KM AG MGLA+G+ PH+ DA EL++ AW ++    +ARC++KA+ LP  M AEL   HG+           A A  V  L  +++  + +G+   DE+I+E LA L++              Q W  +E++++   ALR D   ++ A
Sbjct:  209 CFENGGSPLKYFSQANAWSDSATFLTWWLVVFLPFVRRFTHKPVLLLMDGCSSHSDLVDDRGQVTVKTYPPLCTAVHQPMDLGVIAKTKVNYRKELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHVRDAAELLQKAWASVTAQDIARCFVKAETLPEEMAAELTKQHGKTRFNVAKPDLKALAETVKTLSTSVKDAQKQGSRVVDEEISELLAELNIEPRKPVAGEAVAAIQGWATIEDDEEAVEALRLDAVEDMTA 473          
BLAST of mRNA_P-wetherbeei_contig9694.1.1 vs. uniprot
Match: A0A6H5JP23_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP23_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 5.280e-55
Identity = 114/263 (43.35%), Postives = 149/263 (56.65%), Query Frame = 1
Query:    1 CFKKKRPPLHYFSQAKAWSDQRVFAVWFGRVLLPHVRRLTAKKVLLIMDNCTGHGELADPCGQVKVICLPPNCTAVHQPMDQGIIAALKLRFRTGLLYKKVATLAARGALRAAAKAMKMPAGPMGLAEGYDPHLLDAMELMKAAWGAMEEGSVARCWLKADILPLAMQAELQSLHGRGAAA------GAAAPAVADLEAAIRTLRIRGTEAEDEDIAEALA-LHVGYGXXXXXXXXXVAQRWVQLEEEDDVAAALRSDLRGEL 768
            CFK    PL Y+SQ  AWSD   F  W+ +V LP VRR T + VLL+MD C  HG+L D  GQV V   PP CT+VHQPMD GIIA  K+ FR  LL  K +T+     LRA AKA KM AG MGLA+G+ PHL DA EL+K AW ++    +ARC++KAD LP  M AEL + HG+   +       A    V  L  ++   + +G    DE+I+E  A L +  G           + W  +E++++V  ALR D   E+
Sbjct:  155 CFKSAPSPLKYYSQTNAWSDSATFLKWWLQVFLPFVRRFTHEPVLLLMDGCASHGDLVDDRGQVTVKFYPPKCTSVHQPMDLGIIAKTKVVFRKELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHLRDAAELLKKAWASITAQDIARCFVKADTLPSEMAAELTTQHGKTRFSIAEPDLKALTETVNKLSTSVGEAQKQGAGIVDEEISELFAELDIEPGKPVEEEAVSAIRGWATIEDDEEVTEALRLDAADEM 417          
BLAST of mRNA_P-wetherbeei_contig9694.1.1 vs. uniprot
Match: A0A6H5JRP4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRP4_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 4.600e-54
Identity = 112/258 (43.41%), Postives = 155/258 (60.08%), Query Frame = 1
Query:    1 CFKKKRPPLHYFSQAKAWSDQRVFAVWFGRVLLPHVRRLTAKKVLLIMDNCTGHGELADPCGQVKVICLPPNCTAVHQPMDQGIIAALKLRFRTGLLYKKVATLAARGALRAAAKAMKMPAGPMGLAEGYDPHLLDAMELMKAAWGAMEEGSVARCWLKADILPLAMQAELQSLHGRGAAAGAAAPAVADLEAAIRTLRIRGTE-AEDEDIAEAL-ALHVGYGXXXXXXXXXVAQRWVQLEEEDDVAAALRSDLRGEL 768
            CFK +  P+ YFSQ  AWS  RVF +W+ +V LPHVR +T++KVLLIMDN + H +L DP  Q+K++ LPPNCT  HQP D GIIAA K+R+RT LL  +V T+ +   LR  AK  K+  G MGLAE   PH+LDA EL   AW      ++ RCW K DILP A+ A+L    G+         ++ +L   ++ L +   + A  ED+ EAL  L +  G          AQ W+++EE++ VA A+ +DL+ +L
Sbjct:  181 CFKIRGSPIKYFSQKNAWSVARVFKLWWSQVFLPHVRSVTSEKVLLIMDNHSSHADLVDPKEQLKILELPPNCTRKHQPRDAGIIAAWKVRYRTKLLGIRVDTMTSAAQLREQAKERKVIRGCMGLAERAQPHILDAAELGLEAWKEALPETIKRCWRKFDILPPAVNADLDQDVGKNIRNKK--ESLQELTDLVQRLSLEAKKTAVHEDLGEALKGLGLAPGAAPTRASMEAAQTWLRVEEKEGVAEAIIADLKDDL 436          
BLAST of mRNA_P-wetherbeei_contig9694.1.1 vs. uniprot
Match: A0A6H5KJV8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV8_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.480e-50
Identity = 115/288 (39.93%), Postives = 146/288 (50.69%), Query Frame = 1
Query:    1 CFKKKRPPLHYFSQAKAWSDQRVFAVWFG-------------------RVLLPHVRRLTAKKVLLIMDNCTGHGELADPCGQVKVICLPPNCTAVHQPMDQGIIAALKLRFRTGLLYKKVATLAARGALRAAAKAMKMPAGPMGLAEGYDPHLLDAMELMKAAWGAMEEGSVARCWLKADILPLAMQAELQSLHGRGAAAGAAAPAVADLEAAIRTLRIRGTEAED----------EDIAEALA-LHVGYGXXXXXXXXXVAQRWVQLEEEDDVAAALRSDLRGELVA 774
            CFK    PL YFSQA AWSD   F  W                      V LP VRR T + VLL+MD C+ H +L D  GQV     PP CT+VHQPMD G+IA  K+ +R  L+  K +T+     LR  AKA KM AG MGLA+G+ PH+ DA EL++ AW ++     ARC++KAD LP  M AEL   HG+      A P   DL+A   T+    T   D          E+I+E  A L +  G           Q W  +E++D+VA ALR D   E+ A
Sbjct:  134 CFKDGGSPLKYFSQANAWSDSATFLKWVXXXXXXXXXXXXXXXXXXWLEVFLPFVRRFTHEPVLLLMDGCSSHVDLVDDRGQVTTKAYPPLCTSVHQPMDLGVIAKTKVVYRKELIDVKTSTMFVADTLRTQAKARKMKAGTMGLAQGHQPHVRDAAELLEKAWASVTAQGTARCFVKADTLPPEMAAELTKQHGK-TRFSIAEP---DLKALTETVNKMSTSVGDAHEQRAGTVDEEISELFAELDIEPGKPVEGEAVSAIQGWATIEDDDEVAEALRLDAVDEMAA 417          
BLAST of mRNA_P-wetherbeei_contig9694.1.1 vs. uniprot
Match: A0A6H5KIM2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM2_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 1.490e-50
Identity = 103/258 (39.92%), Postives = 146/258 (56.59%), Query Frame = 1
Query:   22 PLHYFSQAKAWSDQRVFAVWFGRVLLPHVRRLTAKKVLLIMDNCTGHGELADPCGQVKVICLPPNCTAVHQPMDQGIIAALKLRFRTGLLYKKVATLAARGALRAAAKAMKMPAGPMGLAEGYDPHLLDAMELMKAAWGAMEEGSVARCWLKADILPLAMQAELQSLHGRGAAA------GAAAPAVADLEAAIRTLRIRGTEAEDEDIAEALA-LHVGYGXXXXXXXXXVAQRWVQLEEEDDVAAALRSDLRGELVA 774
            P+ YFSQ  AWSD   F  W+    LP V  LT + VLL+MD C+ H +L       +V C PPNCT+VHQPMDQGIIA  K+ +R  L+  K +T+     L   AK +KM AG MGLA+G+ PHL DA EL++ A  ++    +ARC++KA+ LP+ M A L + HG+           A   +V+ L  +++  + +G+  +DEDI + LA L++  G           Q W  +E+EDDV  A+R D   E+ A
Sbjct:   31 PVTYFSQTNAWSDTAAFLKWWREFFLPFVGHLTHEPVLLLMDGCSSHADLEVD----RVKCCPPNCTSVHQPMDQGIIAKTKVVYRKELVDIKTSTIFVAETLGDQAKQLKMKAGTMGLAQGHHPHLRDAAELLQKARASVTARDIARCFVKANTLPVEMAAALTAAHGKARDRIAEPEHKALTASVSVLSTSVQEAQQQGSSIQDEDICDLLAELNIEPGKPIAEEAVNAVQHWATIEDEDDVVEAMRGDAVEEMTA 284          
BLAST of mRNA_P-wetherbeei_contig9694.1.1 vs. uniprot
Match: A0A6H5K1S6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S6_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 5.710e-50
Identity = 109/266 (40.98%), Postives = 145/266 (54.51%), Query Frame = 1
Query:    1 CFKKKRPPLHYFSQAKAWSDQRVFAVWFGRVLLPHVRRLTAKKVLLIMDNCTGHGELADPCGQVKVICLPPNCTAVHQPMDQGIIAALKLRFRTGLLYKKVATLAARGALRAAAKAMKMPAGPMGLAEGYDPHLLDAMELMKAAWGAMEEGSVARCWLKADILPLAMQAELQSLHGRGAAAGAAAPAVADLEAAIRTLRI-------RGTEAEDEDIAEALA-LHVGYGXXXXXXXXXVAQRWVQLEEEDDVAAALRSDLRGELVA 774
            CFK    PL       A SD   F  W+  V LP VRR T + VLL+MD C+ H +L D  GQV V   PP CTAVHQPMD G+IA  K+ +R  LL  K +T+     LRA AKA KM AG MGLA+G+ PH+ DA EL++ AW ++    +ARC++KA+ LP  M AEL   H R      A P +  L   + T+         +G+   DE+I+E LA L++  G           Q W  +E+E++V  ALR D   ++ A
Sbjct:  259 CFKNGGSPLQVLLADNAGSDSATFLKWWLEVFLPFVRRFTHEPVLLLMDGCSSHSDLVDDRGQVTVKTYPPLCTAVHQPMDLGVIAKTKVNYRKELLDVKTSTMLVADTLRAQAKARKMKAGTMGLAQGHQPHVRDAAELLQKAWASVTAQDIARCFVKAETLPEEMAAELTKQH-RNTRFNVAEPDLKVLAETVNTVSTSVQDAQKQGSRVVDEEISELLAELNIEPGKPVAGEAVAAIQGWATIEDEEEVVEALRLDAVEDMTA 523          
BLAST of mRNA_P-wetherbeei_contig9694.1.1 vs. uniprot
Match: A0A6H5KD82_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD82_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 5.600e-48
Identity = 98/221 (44.34%), Postives = 129/221 (58.37%), Query Frame = 1
Query:    1 CFKKKRPPLHYFSQAKAWSDQRVFAVWFGRVLLPHVRRLTAKKVLLIMDNCTGHGELADPCGQVKVICLPPNCTAVHQPMDQGIIAALKLRFRTGLLYKKVATLAARGALRAAAKAMKMPAGPMGLAEGYDPHLLDAMELMKAAWGAMEEGSVARCWLKADILPLAMQAELQSLHGR------GAAAGAAAPAVADLEAAIRTLRIRGTEAEDEDIAEALA 645
            CFK    PL YFSQ  AWSD   F  W+  V LP +RR T + VLL+MD C+ H  L D  GQV V   PP CTAVHQPMD G+IA  K+ +   LL  K +T+     LRA AKA KM AG +GLA+G+ PH+ DA EL++ AW ++    +ARC++KA+ LP  M AEL   H +           A A  V  L  +++  + +G+   DE+I+E LA
Sbjct:  326 CFKNGGSPLKYFSQTNAWSDSATFLRWWLEVFLPFLRRFTHEPVLLLMDGCSSHSHLVDDRGQVTVKTYPPLCTAVHQPMDLGVIAKTKVNYGKELLDVKTSTMLMADTLRAQAKARKMKAGTLGLAQGHQPHVRDAAELLQKAWASVTAQDIARCFVKAETLPEEMAAELTKQHDKTRFNVADPDLKALAETVNTLSTSVQDAQKQGSRVVDEEISELLA 546          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9694.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4D9_9PHAE4.510e-6044.36DDE-1 domain-containing protein n=8 Tax=Ectocarpus... [more]
A0A6H5JCF6_9PHAE5.970e-5942.64DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KUT5_9PHAE2.630e-5743.35DDE-1 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JMF1_9PHAE5.780e-5642.26DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JP23_9PHAE5.280e-5543.35DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JRP4_9PHAE4.600e-5443.41HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KJV8_9PHAE1.480e-5039.93DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KIM2_9PHAE1.490e-5039.92DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K1S6_9PHAE5.710e-5040.98DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KD82_9PHAE5.600e-4844.34HTH CENPB-type domain-containing protein n=2 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9694contigP-wetherbeei_contig9694:245..1397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6669.EFX68856
PFAMsCENP-B_N,DDE_1,HTH_Tnp_Tc5
Model size958
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.74e-26
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38HJW@33154|Opisthokonta,3BCG5@33208|Metazoa,3CXR0@33213|Bilateria,420II@6656|Arthropoda
DescriptionJerky protein homolog-like
Cds size954
COG categoryBD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.8961399-CDS-P-wetherbeei_contig9694:244..2681683187105.8961399-CDS-P-wetherbeei_contig9694:244..268Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9694 245..268 +
1683187105.9076974-CDS-P-wetherbeei_contig9694:465..13951683187105.9076974-CDS-P-wetherbeei_contig9694:465..1395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9694 466..1395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9694.1.1prot_P-wetherbeei_contig9694.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9694 245..1395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9694.1.1

>prot_P-wetherbeei_contig9694.1.1 ID=prot_P-wetherbeei_contig9694.1.1|Name=mRNA_P-wetherbeei_contig9694.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=318bp
CFKKKRPPLHYFSQAKAWSDQRVFAVWFGRVLLPHVRRLTAKKVLLIMDN
CTGHGELADPCGQVKVICLPPNCTAVHQPMDQGIIAALKLRFRTGLLYKK
VATLAARGALRAAAKAMKMPAGPMGLAEGYDPHLLDAMELMKAAWGAMEE
GSVARCWLKADILPLAMQAELQSLHGRGAAAGAAAPAVADLEAAIRTLRI
RGTEAEDEDIAEALALHVGYGASSAAAAAAVAQRWVQLEEEDDVAAALRS
DLRGELVAAAAAATVAEAAAAAAAAAAEAADSDDEGGSGDPMDSPDPSQG
SDSQNFEPLPPYSVSAKA
back to top

mRNA from alignment at P-wetherbeei_contig9694:245..1397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9694.1.1 ID=mRNA_P-wetherbeei_contig9694.1.1|Name=mRNA_P-wetherbeei_contig9694.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1153bp|location=Sequence derived from alignment at P-wetherbeei_contig9694:245..1397+ (Phaeothamnion wetherbeei SAG_119_79)
TGCTTCAAGAAGAAGCGCCCGCCGGTGAGCTTTGCTTTTCGTCAAAAAAA TCTGGATTCTATACACTTCTGTTCTCTCTCTATCTTGCCTGCTTCGTCGT CATATATTTTAACTGCCCTTTGCTATGTTGCTGGTGAACCAAATATTTCC TACCTTGAACTTACATTCCCTGCTTTCTGTTTTGCCATCTCTGCAATTCT GCCATCGTGCTCGTTCTCCAGCTGCACTACTTCAGCCAAGCGAAGGCGTG GTCCGACCAGCGCGTCTTTGCGGTGTGGTTTGGCCGAGTGCTCCTTCCTC ACGTCCGCCGCCTGACGGCCAAGAAGGTGCTCCTCATCATGGACAACTGC ACTGGGCACGGAGAGCTGGCGGACCCGTGCGGCCAAGTCAAGGTGATCTG CCTGCCACCGAACTGCACGGCCGTGCACCAGCCGATGGACCAGGGCATCA TCGCCGCGCTTAAGCTGCGCTTCCGCACGGGGCTGCTGTACAAGAAGGTG GCAACGTTGGCGGCGCGCGGCGCGCTTCGCGCCGCTGCGAAGGCGATGAA GATGCCAGCTGGCCCCATGGGCCTGGCGGAGGGTTACGATCCGCATCTTC TGGACGCCATGGAGCTGATGAAAGCAGCGTGGGGGGCGATGGAGGAGGGG AGCGTGGCGCGCTGCTGGCTTAAGGCCGACATCCTGCCGCTGGCCATGCA AGCCGAGCTTCAGTCGCTGCATGGCCGCGGCGCGGCTGCTGGTGCCGCTG CCCCAGCCGTCGCAGATTTGGAGGCCGCAATTAGAACGCTGCGCATCCGC GGCACGGAGGCTGAGGACGAGGACATCGCCGAGGCACTCGCACTTCATGT CGGCTATGGGGCATCCAGCGCAGCCGCAGCAGCCGCTGTGGCGCAGCGCT GGGTGCAGCTAGAGGAGGAGGACGACGTGGCAGCGGCGCTGCGTTCTGAC TTGCGCGGCGAGCTCGTGGCTGCCGCTGCCGCTGCAACGGTGGCCGAAGC TGCGGCAGCCGCTGCAGCCGCCGCTGCTGAGGCTGCCGACAGCGACGACG AGGGCGGCAGCGGCGACCCCATGGACTCGCCTGACCCCAGCCAAGGCTCT GATTCCCAGAACTTCGAGCCTCTGCCGCCGTATTCTGTTTCCGCCAAGGC TTT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9694:245..1397+

>mRNA_P-wetherbeei_contig9694.1.1 ID=mRNA_P-wetherbeei_contig9694.1.1|Name=mRNA_P-wetherbeei_contig9694.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=954bp|location=Sequence derived from alignment at P-wetherbeei_contig9694:245..1397+ (Phaeothamnion wetherbeei SAG_119_79)
TGCTTCAAGAAGAAGCGCCCGCCGCTGCACTACTTCAGCCAAGCGAAGGC
GTGGTCCGACCAGCGCGTCTTTGCGGTGTGGTTTGGCCGAGTGCTCCTTC
CTCACGTCCGCCGCCTGACGGCCAAGAAGGTGCTCCTCATCATGGACAAC
TGCACTGGGCACGGAGAGCTGGCGGACCCGTGCGGCCAAGTCAAGGTGAT
CTGCCTGCCACCGAACTGCACGGCCGTGCACCAGCCGATGGACCAGGGCA
TCATCGCCGCGCTTAAGCTGCGCTTCCGCACGGGGCTGCTGTACAAGAAG
GTGGCAACGTTGGCGGCGCGCGGCGCGCTTCGCGCCGCTGCGAAGGCGAT
GAAGATGCCAGCTGGCCCCATGGGCCTGGCGGAGGGTTACGATCCGCATC
TTCTGGACGCCATGGAGCTGATGAAAGCAGCGTGGGGGGCGATGGAGGAG
GGGAGCGTGGCGCGCTGCTGGCTTAAGGCCGACATCCTGCCGCTGGCCAT
GCAAGCCGAGCTTCAGTCGCTGCATGGCCGCGGCGCGGCTGCTGGTGCCG
CTGCCCCAGCCGTCGCAGATTTGGAGGCCGCAATTAGAACGCTGCGCATC
CGCGGCACGGAGGCTGAGGACGAGGACATCGCCGAGGCACTCGCACTTCA
TGTCGGCTATGGGGCATCCAGCGCAGCCGCAGCAGCCGCTGTGGCGCAGC
GCTGGGTGCAGCTAGAGGAGGAGGACGACGTGGCAGCGGCGCTGCGTTCT
GACTTGCGCGGCGAGCTCGTGGCTGCCGCTGCCGCTGCAACGGTGGCCGA
AGCTGCGGCAGCCGCTGCAGCCGCCGCTGCTGAGGCTGCCGACAGCGACG
ACGAGGGCGGCAGCGGCGACCCCATGGACTCGCCTGACCCCAGCCAAGGC
TCTGATTCCCAGAACTTCGAGCCTCTGCCGCCGTATTCTGTTTCCGCCAA
GGCT
back to top