mRNA_P-wetherbeei_contig969.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig969.2.1
Unique NamemRNA_P-wetherbeei_contig969.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig969.2.1 vs. uniprot
Match: D7FQU4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQU4_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 4.640e-5
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 1 
Query: 1309 TPSYALPTKHFRPRGSGANGPGSGGEGEDVDGLERLLRRCRQAEAEGTALRLRLEGQRRALQEAEHRVSLLKVEAAAREDEMGRLRRKAAA 1581
            TPSYALPTKHF+               ED  G +++ R+    E E  AL+LRLEG RRA+ E EH+ + L+ +A  RE+E  RL++K AA
Sbjct:  329 TPSYALPTKHFKTPDRDRR---HAVYAEDARGQKQMQRQAH-LEEENAALKLRLEGLRRAIHELEHQANTLRDDARIREEEFSRLKKKLAA 415
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig969.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQU4_ECTSI4.640e-543.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig969contigP-wetherbeei_contig969:6047..7965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1621
Hectar predicted targeting categoryother localisation
Exons3
Cds size1620
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.5645263-CDS-P-wetherbeei_contig969:6046..62261683187105.5645263-CDS-P-wetherbeei_contig969:6046..6226Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig969 6047..6226 +
1683187105.5830333-CDS-P-wetherbeei_contig969:6381..65541683187105.5830333-CDS-P-wetherbeei_contig969:6381..6554Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig969 6382..6554 +
1683187105.6036136-CDS-P-wetherbeei_contig969:6698..79651683187105.6036136-CDS-P-wetherbeei_contig969:6698..7965Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig969 6699..7965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig969.2.1prot_P-wetherbeei_contig969.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig969 6047..7965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig969.2.1

>prot_P-wetherbeei_contig969.2.1 ID=prot_P-wetherbeei_contig969.2.1|Name=mRNA_P-wetherbeei_contig969.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=540bp
KFEAKTRQGPRKEQKKLSSGDFKHLTGVCGTSPSLLPTVGNELRRMYMAD
VGADLLEFEQDDPAFLIELLNDLRAEEKGANRDNGGGNSRSKRSRPHGAG
GAASEAWRGEKGARIVERFIAEIDEGDEDDYAAEAATTAATMAPAEADEL
DASAEKLLSYVDHYRRREARALGAGGGGGNRAVGGGGGSIVGRWRQFAGA
DASREVGGAAAARQPPPPPPPPTRQTDGGVAAGKSPTQRPGRCLEEAAAE
EKDEKGEAEEEDDLEDELLFERLLRRSAGLSPSPERRRRTAASAEAAATV
ATVAAPPPPQPAPPTSQLQPSLRLPPGPAAAVEAESRRGAAAEGRRRAAA
AGSRSDYDENGIDASSSEGSDRSAPAANGDWRRHHHYNGHGCWRDAAGAT
AQLPTTGYGPRRTAPVAAAASLPPPRGGGIGIGAGETPSYALPTKHFRPR
GSGANGPGSGGEGEDVDGLERLLRRCRQAEAEGTALRLRLEGQRRALQEA
EHRVSLLKVEAAAREDEMGRLRRKAAAAVAAAGAAAGHAG
back to top

mRNA from alignment at P-wetherbeei_contig969:6047..7965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig969.2.1 ID=mRNA_P-wetherbeei_contig969.2.1|Name=mRNA_P-wetherbeei_contig969.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1919bp|location=Sequence derived from alignment at P-wetherbeei_contig969:6047..7965+ (Phaeothamnion wetherbeei SAG_119_79)
AAATTCGAGGCGAAAACGCGACAGGGACCGCGCAAAGAGCAAAAAAAGCT
CAGCAGTGGAGATTTTAAGCATCTTACTGGCGTTTGCGGCACAAGCCCTT
CTCTGTTGCCCACCGTTGGGAATGAGCTGCGGCGGATGTACATGGCAGAT
GTGGGCGCCGACCTCCTCGAGTTCGAACAGGTACGTGTGCTGAAGCTCTC
GTTGCGAATTTTAATGCAGCAACTTGTCCGACATTGTCAAACTGCCGAGA
AGTAGTCCCTCTCTCTATGAAGCCAACGAGCGGAAACCGAAACCGTAACC
TTTCTAACTCTGCACACTGCCGTCCGGCCGCCCAGGACGACCCTGCATTC
CTCATCGAGCTCCTCAACGACTTGCGGGCCGAGGAGAAGGGAGCGAATCG
GGATAATGGCGGCGGCAACAGCAGGAGCAAGAGGAGTCGTCCGCACGGAG
CGGGTGGAGCCGCCAGCGAGGCCTGGCGCGGCGAAAAGGGCGCACGCATC
GTGGAGCGGTGAGTCCGGTTGCGTTTTGACGTTTATCAACTCGGGCGCCG
CATCGACTCAGGCGCTGCATCGCCAGCGTCCTTTCGCTGGCATGACACGT
CTTTAGAATTCTGATTTGCTGCATCTGGATCGGCACGCTCCGTCACTCGC
AGCTTCATTGCGGAGATTGACGAGGGGGACGAAGACGATTACGCGGCCGA
AGCGGCGACCACTGCGGCGACGATGGCACCTGCGGAGGCCGACGAACTCG
ACGCGTCGGCGGAGAAGCTTCTTTCCTACGTCGACCACTACCGCCGCCGG
GAAGCGCGTGCGCTCGGAGCTGGCGGCGGTGGCGGCAATCGAGCAGTTGG
CGGCGGCGGCGGCTCAATAGTCGGGAGATGGCGTCAGTTTGCCGGAGCGG
ACGCCTCCAGAGAGGTGGGAGGCGCAGCCGCAGCGCGTCAACCGCCACCA
CCGCCGCCGCCGCCGACACGACAAACTGACGGCGGAGTGGCCGCAGGAAA
GTCCCCAACCCAGCGGCCGGGACGTTGCTTAGAAGAGGCGGCAGCGGAAG
AGAAGGACGAAAAGGGAGAGGCGGAAGAGGAGGACGATCTGGAAGATGAG
CTCCTGTTTGAGCGGCTGCTGCGACGCAGCGCGGGGCTGTCGCCGTCACC
GGAGCGCCGCCGCCGGACAGCGGCATCGGCGGAGGCAGCGGCGACGGTTG
CAACAGTAGCGGCTCCGCCGCCACCACAGCCGGCCCCACCAACATCACAG
TTGCAGCCGTCACTGCGCCTACCACCAGGACCGGCAGCTGCAGTGGAAGC
GGAAAGCAGAAGAGGCGCTGCTGCCGAAGGCAGAAGACGCGCTGCTGCCG
CTGGCAGCAGAAGCGATTACGATGAAAACGGGATCGATGCCTCTTCCTCC
GAGGGGAGCGACCGTAGTGCGCCCGCCGCAAACGGCGATTGGCGCCGCCA
TCACCATTACAACGGCCACGGCTGCTGGAGAGATGCAGCGGGCGCGACAG
CACAGCTGCCCACCACAGGATATGGCCCCCGCCGTACAGCACCGGTAGCA
GCGGCGGCATCCCTACCTCCGCCTCGCGGCGGTGGCATTGGCATCGGCGC
TGGCGAAACACCGTCCTACGCGCTGCCCACGAAGCACTTCCGGCCACGTG
GCAGCGGCGCCAACGGCCCCGGCTCGGGCGGAGAAGGAGAAGACGTCGAT
GGGCTAGAGCGGCTGCTGCGGCGGTGCCGCCAGGCGGAGGCCGAGGGCAC
GGCGCTGCGGCTGCGGCTGGAGGGACAGCGGCGGGCGCTGCAGGAGGCAG
AGCACCGCGTGTCCCTCCTGAAGGTCGAGGCGGCCGCCCGGGAGGACGAG
ATGGGGCGCCTCCGCCGAAAGGCGGCGGCGGCGGTGGCCGCAGCTGGAGC
GGCGGCGGGTCATGCCGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig969:6047..7965+

>mRNA_P-wetherbeei_contig969.2.1 ID=mRNA_P-wetherbeei_contig969.2.1|Name=mRNA_P-wetherbeei_contig969.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1620bp|location=Sequence derived from alignment at P-wetherbeei_contig969:6047..7965+ (Phaeothamnion wetherbeei SAG_119_79)
AAATTCGAGGCGAAAACGCGACAGGGACCGCGCAAAGAGCAAAAAAAGCT
CAGCAGTGGAGATTTTAAGCATCTTACTGGCGTTTGCGGCACAAGCCCTT
CTCTGTTGCCCACCGTTGGGAATGAGCTGCGGCGGATGTACATGGCAGAT
GTGGGCGCCGACCTCCTCGAGTTCGAACAGGACGACCCTGCATTCCTCAT
CGAGCTCCTCAACGACTTGCGGGCCGAGGAGAAGGGAGCGAATCGGGATA
ATGGCGGCGGCAACAGCAGGAGCAAGAGGAGTCGTCCGCACGGAGCGGGT
GGAGCCGCCAGCGAGGCCTGGCGCGGCGAAAAGGGCGCACGCATCGTGGA
GCGCTTCATTGCGGAGATTGACGAGGGGGACGAAGACGATTACGCGGCCG
AAGCGGCGACCACTGCGGCGACGATGGCACCTGCGGAGGCCGACGAACTC
GACGCGTCGGCGGAGAAGCTTCTTTCCTACGTCGACCACTACCGCCGCCG
GGAAGCGCGTGCGCTCGGAGCTGGCGGCGGTGGCGGCAATCGAGCAGTTG
GCGGCGGCGGCGGCTCAATAGTCGGGAGATGGCGTCAGTTTGCCGGAGCG
GACGCCTCCAGAGAGGTGGGAGGCGCAGCCGCAGCGCGTCAACCGCCACC
ACCGCCGCCGCCGCCGACACGACAAACTGACGGCGGAGTGGCCGCAGGAA
AGTCCCCAACCCAGCGGCCGGGACGTTGCTTAGAAGAGGCGGCAGCGGAA
GAGAAGGACGAAAAGGGAGAGGCGGAAGAGGAGGACGATCTGGAAGATGA
GCTCCTGTTTGAGCGGCTGCTGCGACGCAGCGCGGGGCTGTCGCCGTCAC
CGGAGCGCCGCCGCCGGACAGCGGCATCGGCGGAGGCAGCGGCGACGGTT
GCAACAGTAGCGGCTCCGCCGCCACCACAGCCGGCCCCACCAACATCACA
GTTGCAGCCGTCACTGCGCCTACCACCAGGACCGGCAGCTGCAGTGGAAG
CGGAAAGCAGAAGAGGCGCTGCTGCCGAAGGCAGAAGACGCGCTGCTGCC
GCTGGCAGCAGAAGCGATTACGATGAAAACGGGATCGATGCCTCTTCCTC
CGAGGGGAGCGACCGTAGTGCGCCCGCCGCAAACGGCGATTGGCGCCGCC
ATCACCATTACAACGGCCACGGCTGCTGGAGAGATGCAGCGGGCGCGACA
GCACAGCTGCCCACCACAGGATATGGCCCCCGCCGTACAGCACCGGTAGC
AGCGGCGGCATCCCTACCTCCGCCTCGCGGCGGTGGCATTGGCATCGGCG
CTGGCGAAACACCGTCCTACGCGCTGCCCACGAAGCACTTCCGGCCACGT
GGCAGCGGCGCCAACGGCCCCGGCTCGGGCGGAGAAGGAGAAGACGTCGA
TGGGCTAGAGCGGCTGCTGCGGCGGTGCCGCCAGGCGGAGGCCGAGGGCA
CGGCGCTGCGGCTGCGGCTGGAGGGACAGCGGCGGGCGCTGCAGGAGGCA
GAGCACCGCGTGTCCCTCCTGAAGGTCGAGGCGGCCGCCCGGGAGGACGA
GATGGGGCGCCTCCGCCGAAAGGCGGCGGCGGCGGTGGCCGCAGCTGGAG
CGGCGGCGGGTCATGCCGGC
back to top