mRNA_P-wetherbeei_contig9679.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9679.3.1
Unique NamemRNA_P-wetherbeei_contig9679.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9679.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9679contigP-wetherbeei_contig9679:1076..1929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size855
Hectar predicted targeting categoryother localisation
Exons1
Cds size741
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.2378986-CDS-P-wetherbeei_contig9679:1075..18161683187105.2378986-CDS-P-wetherbeei_contig9679:1075..1816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9679 1076..1816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.2470753-UTR-P-wetherbeei_contig9679:1816..19291683187105.2470753-UTR-P-wetherbeei_contig9679:1816..1929Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9679 1817..1929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9679.3.1prot_P-wetherbeei_contig9679.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9679 1076..1816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9679.3.1

>prot_P-wetherbeei_contig9679.3.1 ID=prot_P-wetherbeei_contig9679.3.1|Name=mRNA_P-wetherbeei_contig9679.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=247bp
AAAGPACRGDDCPPGNAPHHAGRRAGAGTAAASAATAAAATGRYRRVDHG
GGTSVHCGAGIGAVVRQPRGLDRRAGNTIEVPDAVAAGERCKRADHAAGG
AGRPHDARSAAGAAVLCLSRWGCRNQRGGNRDYRGGNCGYGGGGAGADAR
ATDAEVWGGGSGRAGWARQRAAAADAAGAARRRSRHRHATCAVRGLAAAA
AIEEGRANGDGCRHGGGHGGGNGGGSCRGGGCGGASSGIAGSDSGG*
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mRNA from alignment at P-wetherbeei_contig9679:1076..1929+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9679.3.1 ID=mRNA_P-wetherbeei_contig9679.3.1|Name=mRNA_P-wetherbeei_contig9679.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=854bp|location=Sequence derived from alignment at P-wetherbeei_contig9679:1076..1929+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGCCGGACCCGCGTGCCGCGGCGACGACTGCCCTCCTGGGAATGC
TCCGCATCACGCAGGCCGGCGTGCCGGCGCAGGGACCGCCGCCGCCTCCG
CCGCCACCGCAGCAGCAGCAACAGGCCGCTATCGCCGGGTGGACCACGGT
GGCGGCACCAGCGTACACTGCGGCGCAGGCATCGGCGCCGTCGTTCGGCA
GCCCCGTGGCCTCGACCGGCGCGCCGGTAACACCATCGAAGTTCCTGACG
CCGTCGCTGCTGGCGAGCGCTGCAAGCGCGCCGACCACGCCGCAGGCGGT
GCCGGCCGCCCCCACGACGCCAGGTCCGCCGCAGGCGCTGCCGTCCTTTG
CCTCTCCCGTTGGGGCTGTCGCAACCAGCGCGGCGGGAACCGTGACTACC
GCGGCGGGAACTGTGGCTACGGCGGCGGCGGCGCCGGCGCTGACGCAAGG
GCGACCGACGCCGAAGTCTGGGGCGGCGGCAGCGGCAGGGCCGGTTGGGC
TCGACAAAGAGCAGCTGCGGCAGACGCTGCTGGAGCTGCTCGACGACGAT
CGCGTCATCGACATGCTACATGCGCGGTACGCGGCCTCGCTGCGGCGGCG
GCGATAGAAGAGGGTAGAGCGAACGGCGACGGCTGCCGCCATGGCGGGGG
ACACGGCGGTGGCAACGGTGGCGGTAGTTGCAGGGGCGGGGGCTGCGGGG
GTGCCAGTAGCGGCATCGCTGGTAGCGACAGCGGTGGGTGAGAAGGTGTT
TTCGGCATAGAGGTGCGAGCGAAATCCAGAGTAGTTGGTGTCGAAAATTA
GGAACAGTCGCGGATCGAAGAGGGTAAGTGTCAGCCATCATGAATTGCTT
CGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9679:1076..1929+

>mRNA_P-wetherbeei_contig9679.3.1 ID=mRNA_P-wetherbeei_contig9679.3.1|Name=mRNA_P-wetherbeei_contig9679.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=741bp|location=Sequence derived from alignment at P-wetherbeei_contig9679:1076..1929+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGCCGGACCCGCGTGCCGCGGCGACGACTGCCCTCCTGGGAATGC
TCCGCATCACGCAGGCCGGCGTGCCGGCGCAGGGACCGCCGCCGCCTCCG
CCGCCACCGCAGCAGCAGCAACAGGCCGCTATCGCCGGGTGGACCACGGT
GGCGGCACCAGCGTACACTGCGGCGCAGGCATCGGCGCCGTCGTTCGGCA
GCCCCGTGGCCTCGACCGGCGCGCCGGTAACACCATCGAAGTTCCTGACG
CCGTCGCTGCTGGCGAGCGCTGCAAGCGCGCCGACCACGCCGCAGGCGGT
GCCGGCCGCCCCCACGACGCCAGGTCCGCCGCAGGCGCTGCCGTCCTTTG
CCTCTCCCGTTGGGGCTGTCGCAACCAGCGCGGCGGGAACCGTGACTACC
GCGGCGGGAACTGTGGCTACGGCGGCGGCGGCGCCGGCGCTGACGCAAGG
GCGACCGACGCCGAAGTCTGGGGCGGCGGCAGCGGCAGGGCCGGTTGGGC
TCGACAAAGAGCAGCTGCGGCAGACGCTGCTGGAGCTGCTCGACGACGAT
CGCGTCATCGACATGCTACATGCGCGGTACGCGGCCTCGCTGCGGCGGCG
GCGATAGAAGAGGGTAGAGCGAACGGCGACGGCTGCCGCCATGGCGGGGG
ACACGGCGGTGGCAACGGTGGCGGTAGTTGCAGGGGCGGGGGCTGCGGGG
GTGCCAGTAGCGGCATCGCTGGTAGCGACAGCGGTGGGTGA
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