mRNA_P-wetherbeei_contig9676.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9676.4.1
Unique NamemRNA_P-wetherbeei_contig9676.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9676.4.1 vs. uniprot
Match: UPI0018850E80 (leucine-rich repeat neuronal protein 2-like isoform X1 n=4 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018850E80)

HSP 1 Score: 66.6 bits (161), Expect = 4.610e-10
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  154 LSKLQHLDLSDNPGIGVLSGALPDGIGALFKLRILRLRGGHLPGLGKG-LGSLLSLTELDAGNNELAEVPPELFRLAELTVLRLDGNHI 417
            LSKL+ LDLS NP + VL       +  L +LR+LRL G  L  L  G L +L++L ELD G+N+LA VPP+L+    +T LRL+GN I
Sbjct:  166 LSKLRELDLSYNP-LSVLDHHTVLAVTELARLRVLRLAGTGLRQLPTGFLHALITLRELDLGDNQLAVVPPDLYNSHAITSLRLNGNPI 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9676.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0018850E804.610e-1048.31leucine-rich repeat neuronal protein 2-like isofor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9676contigP-wetherbeei_contig9676:1931..2359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog529818.AMSG_02264T0
PFAMsLRR_8
Model size431
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.93e-06
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size429
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.2110643-CDS-P-wetherbeei_contig9676:1930..23591683187105.2110643-CDS-P-wetherbeei_contig9676:1930..2359Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9676 1931..2359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9676.4.1prot_P-wetherbeei_contig9676.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9676 1931..2359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9676.4.1

>prot_P-wetherbeei_contig9676.4.1 ID=prot_P-wetherbeei_contig9676.4.1|Name=mRNA_P-wetherbeei_contig9676.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
AAAAAAAAAAAAAAGPTAALQVDLLPLRQLQRLQLDGLRLSAVPPAVASG
ALSKLQHLDLSDNPGIGVLSGALPDGIGALFKLRILRLRGGHLPGLGKGL
GSLLSLTELDAGNNELAEVPPELFRLAELTVLRLDGNHIAMLP
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mRNA from alignment at P-wetherbeei_contig9676:1931..2359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9676.4.1 ID=mRNA_P-wetherbeei_contig9676.4.1|Name=mRNA_P-wetherbeei_contig9676.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig9676:1931..2359+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCCGCCGCAGCAGCTGCCGCCGCTGCCGCGGCTGCCGGCCCCAC
CGCGGCGCTGCAGGTGGACCTGTTGCCGCTGCGGCAGTTGCAGCGGCTTC
AGCTGGACGGCCTCCGGCTGTCCGCAGTACCTCCGGCGGTCGCCAGCGGC
GCCCTCTCCAAACTGCAGCACCTCGACCTCAGCGACAATCCTGGGATCGG
AGTCCTTTCAGGCGCGCTGCCAGACGGCATCGGCGCGCTGTTTAAACTCA
GAATTCTGCGACTGCGTGGCGGCCATCTGCCGGGGCTCGGAAAGGGGCTC
GGGTCGCTTCTGAGCCTGACGGAGCTCGACGCTGGTAACAATGAGCTGGC
CGAGGTGCCTCCGGAACTATTCCGGCTTGCGGAGCTGACGGTGCTGCGGC
TGGACGGGAACCATATCGCCATGTTGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9676:1931..2359+

>mRNA_P-wetherbeei_contig9676.4.1 ID=mRNA_P-wetherbeei_contig9676.4.1|Name=mRNA_P-wetherbeei_contig9676.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig9676:1931..2359+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCCGCCGCAGCAGCTGCCGCCGCTGCCGCGGCTGCCGGCCCCAC
CGCGGCGCTGCAGGTGGACCTGTTGCCGCTGCGGCAGTTGCAGCGGCTTC
AGCTGGACGGCCTCCGGCTGTCCGCAGTACCTCCGGCGGTCGCCAGCGGC
GCCCTCTCCAAACTGCAGCACCTCGACCTCAGCGACAATCCTGGGATCGG
AGTCCTTTCAGGCGCGCTGCCAGACGGCATCGGCGCGCTGTTTAAACTCA
GAATTCTGCGACTGCGTGGCGGCCATCTGCCGGGGCTCGGAAAGGGGCTC
GGGTCGCTTCTGAGCCTGACGGAGCTCGACGCTGGTAACAATGAGCTGGC
CGAGGTGCCTCCGGAACTATTCCGGCTTGCGGAGCTGACGGTGCTGCGGC
TGGACGGGAACCATATCGCCATGTTGCCC
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